Wall clock time and date at job start Tue Mar 31 2020 00:47:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.46795 * 2 1 4 4 C 1.47200 * 109.46777 * 119.99635 * 2 1 3 5 5 C 2.64603 * 109.47083 * 119.99798 * 2 1 3 6 6 C 4.07802 * 109.47122 * 119.99798 * 2 1 3 7 7 O 1.21619 * 119.99883 * 35.32320 * 6 5 4 8 8 N 1.34774 * 120.00208 * 215.32203 * 6 5 4 9 9 C 1.46500 * 120.00193 * 180.02562 * 8 6 5 10 10 C 1.53001 * 109.47179 * 179.97438 * 9 8 6 11 11 C 1.52993 * 109.47105 * 179.97438 * 10 9 8 12 12 N 1.46504 * 109.47058 * 179.97438 * 11 10 9 13 13 C 1.36935 * 119.99937 * 270.00095 * 12 11 10 14 14 H 1.08003 * 119.99855 * 144.92770 * 13 12 11 15 15 C 1.38814 * 120.00273 * 324.92932 * 13 12 11 16 16 N 1.31620 * 119.99838 * 337.93463 * 15 13 12 17 17 Si 1.86801 * 120.00091 * 157.93681 * 15 13 12 18 18 H 1.48501 * 109.46754 * 89.99914 * 17 15 13 19 19 H 1.48495 * 109.46949 * 209.99670 * 17 15 13 20 20 H 1.48495 * 109.47225 * 330.00128 * 17 15 13 21 21 C 1.46494 * 119.99631 * 90.00309 * 12 11 10 22 22 C 1.53008 * 117.49603 * 183.23516 * 21 12 11 23 23 C 1.53005 * 117.50060 * 114.58020 * 21 12 11 24 24 H 1.08998 * 109.47518 * 60.00390 * 1 2 3 25 25 H 1.09004 * 109.47439 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.47580 * 299.99881 * 1 2 3 27 27 H 1.09002 * 109.47031 * 239.99602 * 2 1 3 28 28 H 1.09002 * 109.46447 * 180.02562 * 3 2 1 29 29 H 1.09002 * 109.47358 * 299.99627 * 3 2 1 30 30 H 1.08995 * 109.47478 * 60.00363 * 3 2 1 31 31 H 0.96999 * 119.99484 * 359.97438 * 8 6 5 32 32 H 1.08999 * 109.46741 * 59.99753 * 9 8 6 33 33 H 1.08998 * 109.46801 * 300.00115 * 9 8 6 34 34 H 1.09002 * 109.46733 * 59.99597 * 10 9 8 35 35 H 1.09002 * 109.46889 * 300.00553 * 10 9 8 36 36 H 1.09004 * 109.46724 * 60.00538 * 11 10 9 37 37 H 1.08991 * 109.47467 * 300.00398 * 11 10 9 38 38 H 0.96995 * 119.99672 * 176.06957 * 16 15 13 39 39 H 1.08998 * 115.55292 * 328.90743 * 21 12 11 40 40 H 1.09004 * 117.49709 * 0.02562 * 22 21 12 41 41 H 1.09001 * 117.49616 * 145.02232 * 22 21 12 42 42 H 1.08992 * 117.50031 * 214.97936 * 23 21 12 43 43 H 1.09007 * 117.49694 * 359.97438 * 23 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0206 -0.6938 1.2020 5 6 2.4120 -1.2473 2.1605 6 6 2.8893 -1.9223 3.3298 7 8 2.6775 -3.1111 3.4747 8 7 3.5734 -1.2402 4.2696 9 6 4.0622 -1.9309 5.4655 10 6 4.8004 -0.9359 6.3632 11 6 5.3104 -1.6570 7.6124 12 7 6.0178 -0.7044 8.4717 13 6 7.3640 -0.5092 8.3144 14 1 7.7889 0.4719 8.4675 15 6 8.1825 -1.5721 7.9579 16 7 7.7926 -2.8083 8.1864 17 14 9.8374 -1.2481 7.1542 18 1 10.8805 -1.1198 8.2034 19 1 10.1790 -2.3770 6.2521 20 1 9.7682 0.0101 6.3685 21 6 5.2849 0.0393 9.4993 22 6 6.0643 1.0742 10.3133 23 6 5.6349 -0.2444 10.9615 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.8933 -0.5139 -0.8900 28 1 3.1299 1.4424 -0.0005 29 1 1.6766 1.9563 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 3.7426 -0.2922 4.1538 32 1 4.7437 -2.7290 5.1710 33 1 3.2189 -2.3557 6.0099 34 1 4.1192 -0.1375 6.6576 35 1 5.6438 -0.5114 5.8184 36 1 5.9915 -2.4556 7.3183 37 1 4.4668 -2.0812 8.1570 38 1 8.3381 -3.5521 7.8862 39 1 4.2441 0.2631 9.2652 40 1 7.1223 1.2019 10.0840 41 1 5.5361 1.9786 10.6151 42 1 4.8245 -0.2069 11.6893 43 1 6.4102 -0.9848 11.1589 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001707476713.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:47:45 Heat of formation + Delta-G solvation = 26.589984 kcal Electronic energy + Delta-G solvation = -20644.256723 eV Core-core repulsion = 17498.198593 eV Total energy + Delta-G solvation = -3146.058130 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.81401 -38.86125 -37.35189 -36.75044 -35.30021 -33.58677 -32.81739 -31.06882 -28.05210 -27.46359 -25.83720 -24.26561 -23.05035 -22.53588 -22.42612 -21.47691 -19.66300 -18.29809 -17.39833 -17.20505 -16.95825 -16.73728 -16.39307 -15.80075 -15.60318 -15.18198 -15.11462 -14.42104 -14.38939 -13.94839 -13.67359 -13.26244 -13.09228 -12.97889 -12.79263 -12.59119 -12.50306 -12.43529 -12.35590 -12.29266 -12.05266 -11.88619 -11.61828 -11.41163 -11.33839 -11.29162 -11.22357 -10.88727 -10.45984 -10.25698 -8.53145 -7.79429 -5.44271 0.44306 1.20708 1.43735 1.47567 1.55762 2.00206 2.40796 2.49667 3.11880 3.17357 3.41684 3.51146 4.03324 4.07519 4.15414 4.17023 4.26497 4.32777 4.46012 4.47545 4.55328 4.59550 4.75446 4.79890 4.88331 4.93834 4.95345 4.95577 5.07846 5.09786 5.11686 5.28576 5.32601 5.36008 5.36821 5.46442 5.55516 5.69396 5.86203 6.15386 6.34018 6.45673 6.97428 7.15718 7.86649 8.35882 9.11480 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.017146 B = 0.003220 C = 0.003052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1632.616486 B = 8692.663051 C = 9171.754437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.003 3.997 3 C -0.145 4.145 4 C -0.040 4.040 5 C -0.274 4.274 6 C 0.628 3.372 7 O -0.575 6.575 8 N -0.698 5.698 9 C 0.132 3.868 10 C -0.122 4.122 11 C 0.148 3.852 12 N -0.569 5.569 13 C -0.257 4.257 14 H 0.062 0.938 15 C -0.038 4.038 16 N -0.914 5.914 17 Si 0.950 3.050 18 H -0.287 1.287 19 H -0.294 1.294 20 H -0.269 1.269 21 C 0.102 3.898 22 C -0.181 4.181 23 C -0.222 4.222 24 H 0.096 0.904 25 H 0.054 0.946 26 H 0.057 0.943 27 H 0.121 0.879 28 H 0.058 0.942 29 H 0.093 0.907 30 H 0.058 0.942 31 H 0.416 0.584 32 H 0.051 0.949 33 H 0.069 0.931 34 H 0.072 0.928 35 H 0.055 0.945 36 H 0.069 0.931 37 H 0.032 0.968 38 H 0.250 0.750 39 H 0.115 0.885 40 H 0.074 0.926 41 H 0.112 0.888 42 H 0.101 0.899 43 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.224 10.561 -14.296 22.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.015 4.015 3 C -0.202 4.202 4 C -0.043 4.043 5 C -0.277 4.277 6 C 0.416 3.584 7 O -0.457 6.457 8 N -0.349 5.349 9 C 0.008 3.992 10 C -0.162 4.162 11 C 0.021 3.979 12 N -0.286 5.286 13 C -0.387 4.387 14 H 0.080 0.920 15 C -0.235 4.235 16 N -0.558 5.558 17 Si 0.779 3.221 18 H -0.214 1.214 19 H -0.220 1.220 20 H -0.193 1.193 21 C -0.006 4.006 22 C -0.219 4.219 23 C -0.263 4.263 24 H 0.114 0.886 25 H 0.073 0.927 26 H 0.076 0.924 27 H 0.139 0.861 28 H 0.077 0.923 29 H 0.112 0.888 30 H 0.078 0.922 31 H 0.253 0.747 32 H 0.070 0.930 33 H 0.087 0.913 34 H 0.090 0.910 35 H 0.074 0.926 36 H 0.087 0.913 37 H 0.050 0.950 38 H 0.059 0.941 39 H 0.132 0.868 40 H 0.092 0.908 41 H 0.130 0.870 42 H 0.119 0.881 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -13.236 9.571 -14.143 21.606 hybrid contribution 1.394 -0.191 0.080 1.409 sum -11.842 9.380 -14.063 20.640 Atomic orbital electron populations 1.21866 0.91618 1.02800 1.03934 1.18901 0.97131 0.95881 0.89548 1.21870 1.01602 0.92785 1.03940 1.23523 0.92253 0.94661 0.93833 1.20555 1.06374 1.02814 0.97923 1.14986 0.77637 0.84979 0.80802 1.90821 1.59448 1.16389 1.79032 1.45837 1.54692 1.13917 1.20419 1.21277 0.97955 0.95452 0.84513 1.22106 0.99011 0.98143 0.96952 1.20757 0.94803 0.93018 0.89275 1.43617 1.04266 1.46715 1.34025 1.19220 0.83904 0.92778 1.42784 0.92011 1.25762 1.00386 0.95095 1.02296 1.70166 1.40434 0.98328 1.46894 0.85558 0.80834 0.77333 0.78413 1.21417 1.21984 1.19335 1.21562 0.95381 0.98087 0.85586 1.23042 1.00780 0.93013 1.05033 1.23283 1.03541 0.99332 1.00166 0.88560 0.92653 0.92409 0.86133 0.92317 0.88781 0.92247 0.74677 0.93037 0.91297 0.90969 0.92633 0.91315 0.94962 0.94082 0.86763 0.90757 0.86989 0.88093 0.92933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.37 9.15 71.98 0.66 -0.71 16 2 C 0.00 0.04 3.30 -12.60 -0.04 0.00 16 3 C -0.14 -1.28 9.15 71.98 0.66 -0.62 16 4 C -0.04 -0.84 12.56 31.13 0.39 -0.45 16 5 C -0.27 -7.54 13.61 30.01 0.41 -7.13 16 6 C 0.63 20.84 7.65 85.49 0.65 21.49 16 7 O -0.58 -23.83 17.09 -4.09 -0.07 -23.90 16 8 N -0.70 -20.41 5.55 -470.74 -2.61 -23.02 16 9 C 0.13 4.42 5.67 86.38 0.49 4.91 16 10 C -0.12 -4.33 5.65 30.59 0.17 -4.16 16 11 C 0.15 6.61 5.34 86.38 0.46 7.07 16 12 N -0.57 -27.10 2.78 -678.03 -1.88 -28.98 16 13 C -0.26 -13.50 8.63 84.03 0.73 -12.77 16 14 H 0.06 3.24 6.55 -2.91 -0.02 3.22 16 15 C -0.04 -2.07 4.96 84.86 0.42 -1.65 16 16 N -0.91 -52.83 11.33 21.65 0.25 -52.59 16 17 Si 0.95 44.01 29.61 68.60 2.03 46.04 16 18 H -0.29 -13.27 7.11 99.48 0.71 -12.56 16 19 H -0.29 -13.73 7.11 99.48 0.71 -13.02 16 20 H -0.27 -11.88 7.11 99.48 0.71 -11.18 16 21 C 0.10 4.10 6.56 45.00 0.30 4.39 16 22 C -0.18 -6.64 9.80 30.62 0.30 -6.34 16 23 C -0.22 -8.74 10.36 30.62 0.32 -8.42 16 24 H 0.10 0.44 8.14 -2.39 -0.02 0.42 16 25 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 26 H 0.06 0.61 8.14 -2.38 -0.02 0.59 16 27 H 0.12 1.03 8.14 -2.39 -0.02 1.01 16 28 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 29 H 0.09 0.41 8.14 -2.39 -0.02 0.39 16 30 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 31 H 0.42 9.77 8.44 -92.71 -0.78 8.98 16 32 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 33 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 34 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 35 H 0.05 2.11 8.14 -2.39 -0.02 2.09 16 36 H 0.07 3.61 5.35 -2.38 -0.01 3.60 16 37 H 0.03 1.38 8.07 -2.39 -0.02 1.36 16 38 H 0.25 14.10 8.32 -92.71 -0.77 13.33 16 39 H 0.11 3.92 8.14 -2.39 -0.02 3.90 16 40 H 0.07 3.08 6.37 -2.38 -0.02 3.07 16 41 H 0.11 3.27 8.14 -2.39 -0.02 3.25 16 42 H 0.10 3.30 8.14 -2.39 -0.02 3.28 16 43 H 0.05 2.47 8.14 -2.38 -0.02 2.45 16 Total: -1.00 -68.30 365.29 3.83 -64.47 By element: Atomic # 1 Polarization: 22.16 SS G_CDS: 0.21 Total: 22.37 kcal Atomic # 6 Polarization: -10.30 SS G_CDS: 5.91 Total: -4.39 kcal Atomic # 7 Polarization: -100.34 SS G_CDS: -4.25 Total: -104.59 kcal Atomic # 8 Polarization: -23.83 SS G_CDS: -0.07 Total: -23.90 kcal Atomic # 14 Polarization: 44.01 SS G_CDS: 2.03 Total: 46.04 kcal Total: -68.30 3.83 -64.47 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001707476713.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.057 kcal (2) G-P(sol) polarization free energy of solvation -68.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.467 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds