Wall clock time and date at job start Tue Mar 31 2020 00:30:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47205 * 179.97438 * 2 1 4 4 C 1.53000 * 109.46847 * 202.96919 * 3 2 1 5 5 C 1.52995 * 109.47050 * 179.97438 * 4 3 2 6 6 C 1.53000 * 109.47050 * 180.02562 * 5 4 3 7 7 C 1.53004 * 109.46894 * 180.02562 * 6 5 4 8 8 C 1.50705 * 109.46731 * 179.97438 * 7 6 5 9 9 O 1.21275 * 120.00490 * 0.02562 * 8 7 6 10 10 N 1.34779 * 119.99677 * 179.97438 * 8 7 6 11 11 C 1.46501 * 119.99823 * 180.02562 * 10 8 7 12 12 C 1.53004 * 109.46877 * 180.02562 * 11 10 8 13 13 C 1.53950 * 113.74237 * 86.25986 * 12 11 10 14 14 N 1.47805 * 86.03824 * 90.88049 * 13 12 11 15 15 C 1.36942 * 134.45487 * 204.64668 * 14 13 12 16 16 H 1.08002 * 119.99602 * 179.86453 * 15 14 13 17 17 C 1.38807 * 120.00184 * 359.86555 * 15 14 13 18 18 N 1.31617 * 119.99858 * 0.02562 * 17 15 14 19 19 Si 1.86801 * 120.00250 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.47116 * 59.99643 * 19 17 15 21 21 H 1.48494 * 109.47098 * 179.97438 * 19 17 15 22 22 H 1.48498 * 109.46650 * 300.00031 * 19 17 15 23 23 C 1.47582 * 91.05413 * 24.54887 * 14 13 12 24 24 H 4.44648 * 5.63466 * 180.02562 * 4 1 2 25 25 H 1.08998 * 109.46725 * 82.97111 * 3 2 1 26 26 H 1.08998 * 109.46890 * 322.97070 * 3 2 1 27 27 H 1.09002 * 109.46905 * 60.00253 * 4 3 2 28 28 H 1.08997 * 109.47187 * 300.00226 * 4 3 2 29 29 H 1.09002 * 109.46862 * 60.00469 * 5 4 3 30 30 H 1.08997 * 109.47509 * 300.00272 * 5 4 3 31 31 H 1.08998 * 109.47301 * 60.00788 * 6 5 4 32 32 H 1.08998 * 109.47498 * 300.00021 * 6 5 4 33 33 H 1.09002 * 109.47260 * 60.00320 * 7 6 5 34 34 H 1.08997 * 109.47266 * 300.00028 * 7 6 5 35 35 H 0.97000 * 120.00410 * 0.02562 * 10 8 7 36 36 H 1.08998 * 109.47568 * 60.00247 * 11 10 8 37 37 H 1.08998 * 109.47248 * 299.99470 * 11 10 8 38 38 H 1.09002 * 112.94408 * 314.66403 * 12 11 10 39 39 H 1.08999 * 113.76704 * 205.14826 * 13 12 11 40 40 H 1.09002 * 113.76463 * 336.53620 * 13 12 11 41 41 H 0.97002 * 120.00155 * 180.02562 * 18 17 15 42 42 H 1.08999 * 113.77186 * 221.15323 * 23 14 13 43 43 H 1.09004 * 113.76624 * 89.74800 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 6 3.1554 1.3290 0.5629 5 6 4.6854 1.3295 0.5635 6 6 5.1947 2.6577 1.1271 7 6 6.7247 2.6583 1.1271 8 6 7.2264 3.9668 1.6816 9 8 6.4379 4.8150 2.0417 10 7 8.5514 4.1940 1.7781 11 6 9.0391 5.4657 2.3177 12 6 10.5691 5.4665 2.3176 13 6 11.1886 5.9315 0.9872 14 7 11.1676 7.2895 1.5702 15 6 11.1384 8.5561 1.0503 16 1 11.1256 9.4106 1.7107 17 6 11.1251 8.7416 -0.3252 18 7 11.1401 7.7002 -1.1299 19 14 11.0859 10.4693 -1.0344 20 1 12.2870 11.2170 -0.5831 21 1 11.0777 10.3955 -2.5175 22 1 9.8626 11.1688 -0.5662 23 6 11.1883 6.7327 2.9368 24 1 -1.0502 -0.0003 0.0001 25 1 3.0094 -0.1249 -1.0199 26 1 3.0097 -0.8196 0.6189 27 1 2.7920 1.4546 1.5829 28 1 2.7917 2.1492 -0.0559 29 1 5.0491 1.2038 -0.4563 30 1 5.0488 0.5093 1.1826 31 1 4.8310 2.7830 2.1469 32 1 4.8314 3.4781 0.5083 33 1 7.0882 2.5332 0.1071 34 1 7.0885 1.8379 1.7456 35 1 9.1821 3.5155 1.4905 36 1 8.6754 5.5911 3.3375 37 1 8.6758 6.2862 1.6989 38 1 10.9945 4.5382 2.6991 39 1 12.1922 5.5445 0.8109 40 1 10.5278 5.8102 0.1288 41 1 11.1312 7.8298 -2.0912 42 1 10.5273 7.2500 3.6321 43 1 12.1919 6.5815 3.3344 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713913220.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:30:26 Heat of formation + Delta-G solvation = 40.729618 kcal Electronic energy + Delta-G solvation = -20452.578270 eV Core-core repulsion = 17307.133281 eV Total energy + Delta-G solvation = -3145.444989 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.53953 -38.03178 -36.67954 -34.23388 -33.98161 -32.13859 -31.37003 -28.80394 -27.48734 -25.65908 -24.78334 -23.14439 -22.12889 -21.20537 -20.09761 -18.60463 -18.30924 -16.78172 -16.55380 -16.28620 -15.74995 -15.33601 -14.85632 -14.60807 -14.30938 -13.90929 -13.74630 -13.70341 -13.22509 -12.73802 -12.55937 -12.22414 -12.15205 -11.65917 -11.40104 -11.32940 -11.21473 -11.08024 -10.97763 -10.69698 -10.68730 -10.50456 -10.39899 -10.36964 -9.91608 -9.74863 -9.54576 -9.38798 -8.77172 -8.62924 -6.85466 -5.74093 -3.05861 2.53354 2.56486 2.93915 3.42323 3.46285 3.47243 3.49204 4.06882 4.48774 4.67758 4.69164 4.76892 5.00816 5.03465 5.18834 5.23307 5.34302 5.37166 5.38583 5.40857 5.54639 5.60796 5.61981 5.68692 5.78797 5.81029 5.96616 6.00680 6.14537 6.18181 6.27753 6.34879 6.53952 6.65279 6.71514 6.85344 7.20469 7.32872 7.34280 7.58157 7.84037 8.00975 8.54277 9.07490 9.73969 10.62560 11.43051 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.022972 B = 0.002556 C = 0.002396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1218.594586 B =10950.889574 C =11682.958379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.184 4.184 3 C -0.015 4.015 4 C -0.115 4.115 5 C -0.120 4.120 6 C -0.105 4.105 7 C -0.140 4.140 8 C 0.507 3.493 9 O -0.547 6.547 10 N -0.724 5.724 11 C 0.148 3.852 12 C -0.155 4.155 13 C 0.166 3.834 14 N -0.611 5.611 15 C -0.222 4.222 16 H 0.079 0.921 17 C -0.009 4.009 18 N -0.922 5.922 19 Si 0.911 3.089 20 H -0.286 1.286 21 H -0.290 1.290 22 H -0.284 1.284 23 C 0.126 3.874 24 H 0.216 0.784 25 H 0.086 0.914 26 H 0.086 0.914 27 H 0.066 0.934 28 H 0.067 0.933 29 H 0.065 0.935 30 H 0.064 0.936 31 H 0.069 0.931 32 H 0.071 0.929 33 H 0.092 0.908 34 H 0.090 0.910 35 H 0.398 0.602 36 H 0.057 0.943 37 H 0.081 0.919 38 H 0.066 0.934 39 H 0.026 0.974 40 H 0.075 0.925 41 H 0.253 0.747 42 H 0.045 0.955 43 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.853 -17.964 3.953 21.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.184 4.184 3 C -0.052 4.052 4 C -0.153 4.153 5 C -0.157 4.157 6 C -0.143 4.143 7 C -0.180 4.180 8 C 0.293 3.707 9 O -0.424 6.424 10 N -0.375 5.375 11 C 0.025 3.975 12 C -0.175 4.175 13 C 0.040 3.960 14 N -0.338 5.338 15 C -0.350 4.350 16 H 0.096 0.904 17 C -0.205 4.205 18 N -0.570 5.570 19 Si 0.741 3.259 20 H -0.213 1.213 21 H -0.216 1.216 22 H -0.211 1.211 23 C 0.000 4.000 24 H 0.232 0.768 25 H 0.105 0.895 26 H 0.104 0.896 27 H 0.085 0.915 28 H 0.086 0.914 29 H 0.084 0.916 30 H 0.083 0.917 31 H 0.088 0.912 32 H 0.089 0.911 33 H 0.111 0.889 34 H 0.108 0.892 35 H 0.232 0.768 36 H 0.075 0.925 37 H 0.099 0.901 38 H 0.084 0.916 39 H 0.044 0.956 40 H 0.093 0.907 41 H 0.063 0.937 42 H 0.063 0.937 43 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -12.414 -17.083 3.954 21.484 hybrid contribution 0.387 0.636 -0.628 0.973 sum -12.027 -16.447 3.326 20.645 Atomic orbital electron populations 1.24924 0.96026 1.01050 1.01417 1.23257 0.94727 1.00291 1.00171 1.18809 0.84531 0.99198 1.02618 1.21550 0.95669 0.96264 1.01810 1.21624 0.94640 0.97871 1.01600 1.21327 0.93087 0.97324 1.02514 1.21680 0.97804 0.95699 1.02850 1.20658 0.82356 0.89197 0.78483 1.90695 1.55332 1.47110 1.49296 1.46067 1.06846 1.19532 1.65018 1.21051 0.92658 0.85381 0.98443 1.23448 0.94171 0.97897 1.01963 1.22349 0.96782 0.83501 0.93329 1.46037 1.86081 1.01581 1.00072 1.18981 1.43581 0.82138 0.90269 0.90366 1.24762 1.02562 0.97401 0.95766 1.69794 1.56829 1.27838 1.02513 0.86213 0.77922 0.83737 0.77985 1.21255 1.21593 1.21058 1.22525 0.96755 0.90743 0.90003 0.76759 0.89526 0.89594 0.91478 0.91375 0.91577 0.91718 0.91241 0.91064 0.88918 0.89194 0.76845 0.92453 0.90112 0.91620 0.95626 0.90702 0.93691 0.93670 0.94581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -1.81 19.25 29.55 0.57 -1.24 16 2 C -0.18 -1.68 13.34 -37.12 -0.50 -2.17 16 3 C -0.02 -0.11 5.70 -29.52 -0.17 -0.27 16 4 C -0.12 -0.89 5.17 -26.73 -0.14 -1.03 16 5 C -0.12 -0.87 5.21 -26.73 -0.14 -1.01 16 6 C -0.10 -1.06 4.50 -26.73 -0.12 -1.18 16 7 C -0.14 -1.42 5.70 -27.88 -0.16 -1.57 16 8 C 0.51 7.66 7.83 -10.98 -0.09 7.58 16 9 O -0.55 -10.69 15.98 5.56 0.09 -10.60 16 10 N -0.72 -10.62 5.56 -60.29 -0.33 -10.96 16 11 C 0.15 2.65 5.42 -4.04 -0.02 2.63 16 12 C -0.16 -2.76 3.99 -89.69 -0.36 -3.12 16 13 C 0.17 3.78 7.03 -2.84 -0.02 3.76 16 14 N -0.61 -15.61 3.59 -177.69 -0.64 -16.25 16 15 C -0.22 -6.31 10.70 -15.06 -0.16 -6.47 16 16 H 0.08 2.15 7.83 -52.49 -0.41 1.74 16 17 C -0.01 -0.25 5.50 -17.43 -0.10 -0.34 16 18 N -0.92 -27.50 11.39 55.49 0.63 -26.86 16 19 Si 0.91 22.56 29.55 -169.99 -5.02 17.54 16 20 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 21 H -0.29 -7.22 7.11 56.52 0.40 -6.81 16 22 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 23 C 0.13 2.54 8.51 -2.96 -0.03 2.52 16 24 H 0.22 1.08 7.80 -54.08 -0.42 0.65 16 25 H 0.09 0.53 8.14 -51.93 -0.42 0.10 16 26 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 28 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.07 0.77 8.10 -51.93 -0.42 0.35 16 32 H 0.07 0.85 8.10 -51.93 -0.42 0.43 16 33 H 0.09 0.82 8.14 -51.93 -0.42 0.39 16 34 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.40 4.64 8.47 -40.82 -0.35 4.30 16 36 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 37 H 0.08 1.81 7.98 -51.93 -0.41 1.40 16 38 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 39 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 40 H 0.07 1.90 7.12 -51.93 -0.37 1.53 16 41 H 0.25 7.35 8.31 -40.82 -0.34 7.01 16 42 H 0.05 0.87 8.10 -51.93 -0.42 0.45 16 43 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 LS Contribution 364.77 15.07 5.50 5.50 Total: -1.00 -34.33 364.77 -8.63 -42.96 By element: Atomic # 1 Polarization: 8.04 SS G_CDS: -7.43 Total: 0.61 kcal Atomic # 6 Polarization: -0.51 SS G_CDS: -1.42 Total: -1.93 kcal Atomic # 7 Polarization: -53.73 SS G_CDS: -0.34 Total: -54.07 kcal Atomic # 8 Polarization: -10.69 SS G_CDS: 0.09 Total: -10.60 kcal Atomic # 14 Polarization: 22.56 SS G_CDS: -5.02 Total: 17.54 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -34.33 -8.63 -42.96 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713913220.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.685 kcal (2) G-P(sol) polarization free energy of solvation -34.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.955 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds