Wall clock time and date at job start Tue Mar 31 2020 00:30:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47205 * 179.97438 * 2 1 4 4 C 1.53000 * 109.46847 * 202.96919 * 3 2 1 5 5 C 1.52995 * 109.47050 * 179.97438 * 4 3 2 6 6 C 1.53000 * 109.47050 * 180.02562 * 5 4 3 7 7 C 1.53004 * 109.46894 * 180.02562 * 6 5 4 8 8 C 1.50705 * 109.46731 * 179.97438 * 7 6 5 9 9 O 1.21275 * 120.00490 * 0.02562 * 8 7 6 10 10 N 1.34779 * 119.99677 * 179.97438 * 8 7 6 11 11 C 1.46501 * 119.99823 * 180.02562 * 10 8 7 12 12 C 1.53004 * 109.46877 * 180.02562 * 11 10 8 13 13 C 1.53950 * 113.74237 * 86.25986 * 12 11 10 14 14 N 1.47805 * 86.03824 * 90.88049 * 13 12 11 15 15 C 1.36942 * 134.45487 * 204.64668 * 14 13 12 16 16 H 1.08002 * 119.99602 * 179.86453 * 15 14 13 17 17 C 1.38807 * 120.00184 * 359.86555 * 15 14 13 18 18 N 1.31617 * 119.99858 * 0.02562 * 17 15 14 19 19 Si 1.86801 * 120.00250 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.47116 * 59.99643 * 19 17 15 21 21 H 1.48494 * 109.47098 * 179.97438 * 19 17 15 22 22 H 1.48498 * 109.46650 * 300.00031 * 19 17 15 23 23 C 1.47582 * 91.05413 * 24.54887 * 14 13 12 24 24 H 4.44648 * 5.63466 * 180.02562 * 4 1 2 25 25 H 1.08998 * 109.46725 * 82.97111 * 3 2 1 26 26 H 1.08998 * 109.46890 * 322.97070 * 3 2 1 27 27 H 1.09002 * 109.46905 * 60.00253 * 4 3 2 28 28 H 1.08997 * 109.47187 * 300.00226 * 4 3 2 29 29 H 1.09002 * 109.46862 * 60.00469 * 5 4 3 30 30 H 1.08997 * 109.47509 * 300.00272 * 5 4 3 31 31 H 1.08998 * 109.47301 * 60.00788 * 6 5 4 32 32 H 1.08998 * 109.47498 * 300.00021 * 6 5 4 33 33 H 1.09002 * 109.47260 * 60.00320 * 7 6 5 34 34 H 1.08997 * 109.47266 * 300.00028 * 7 6 5 35 35 H 0.97000 * 120.00410 * 0.02562 * 10 8 7 36 36 H 1.08998 * 109.47568 * 60.00247 * 11 10 8 37 37 H 1.08998 * 109.47248 * 299.99470 * 11 10 8 38 38 H 1.09002 * 112.94408 * 314.66403 * 12 11 10 39 39 H 1.08999 * 113.76704 * 205.14826 * 13 12 11 40 40 H 1.09002 * 113.76463 * 336.53620 * 13 12 11 41 41 H 0.97002 * 120.00155 * 180.02562 * 18 17 15 42 42 H 1.08999 * 113.77186 * 221.15323 * 23 14 13 43 43 H 1.09004 * 113.76624 * 89.74800 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 6 3.1554 1.3290 0.5629 5 6 4.6854 1.3295 0.5635 6 6 5.1947 2.6577 1.1271 7 6 6.7247 2.6583 1.1271 8 6 7.2264 3.9668 1.6816 9 8 6.4379 4.8150 2.0417 10 7 8.5514 4.1940 1.7781 11 6 9.0391 5.4657 2.3177 12 6 10.5691 5.4665 2.3176 13 6 11.1886 5.9315 0.9872 14 7 11.1676 7.2895 1.5702 15 6 11.1384 8.5561 1.0503 16 1 11.1256 9.4106 1.7107 17 6 11.1251 8.7416 -0.3252 18 7 11.1401 7.7002 -1.1299 19 14 11.0859 10.4693 -1.0344 20 1 12.2870 11.2170 -0.5831 21 1 11.0777 10.3955 -2.5175 22 1 9.8626 11.1688 -0.5662 23 6 11.1883 6.7327 2.9368 24 1 -1.0502 -0.0003 0.0001 25 1 3.0094 -0.1249 -1.0199 26 1 3.0097 -0.8196 0.6189 27 1 2.7920 1.4546 1.5829 28 1 2.7917 2.1492 -0.0559 29 1 5.0491 1.2038 -0.4563 30 1 5.0488 0.5093 1.1826 31 1 4.8310 2.7830 2.1469 32 1 4.8314 3.4781 0.5083 33 1 7.0882 2.5332 0.1071 34 1 7.0885 1.8379 1.7456 35 1 9.1821 3.5155 1.4905 36 1 8.6754 5.5911 3.3375 37 1 8.6758 6.2862 1.6989 38 1 10.9945 4.5382 2.6991 39 1 12.1922 5.5445 0.8109 40 1 10.5278 5.8102 0.1288 41 1 11.1312 7.8298 -2.0912 42 1 10.5273 7.2500 3.6321 43 1 12.1919 6.5815 3.3344 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713913220.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:30:26 Heat of formation + Delta-G solvation = 18.929743 kcal Electronic energy + Delta-G solvation = -20453.523584 eV Core-core repulsion = 17307.133281 eV Total energy + Delta-G solvation = -3146.390303 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.84289 -39.65372 -37.35366 -35.61133 -34.77729 -34.14941 -32.14197 -30.41611 -28.62042 -27.11010 -26.50603 -24.41622 -23.53326 -21.89386 -21.34512 -20.18163 -18.87599 -18.73704 -17.75383 -17.20914 -17.04068 -16.89694 -16.27162 -15.78556 -15.61616 -15.15135 -14.91134 -14.60188 -14.38405 -14.34469 -13.98205 -13.34833 -13.14445 -12.97194 -12.88603 -12.81589 -12.55140 -12.36049 -12.24852 -12.04162 -11.89868 -11.81678 -11.49270 -11.38875 -11.28816 -11.06012 -10.95305 -10.89137 -10.72278 -9.99031 -8.88609 -7.90229 -5.21455 1.42586 1.46062 1.51609 1.74843 1.89081 1.93215 2.31894 2.47316 3.30761 3.45071 3.52692 3.71985 3.88772 4.01138 4.01518 4.06789 4.29488 4.34083 4.53210 4.57302 4.62824 4.73017 4.78014 4.79743 4.90037 4.90531 4.97145 5.01860 5.02641 5.11260 5.13703 5.25410 5.26467 5.30393 5.47204 5.48614 5.55812 5.58126 5.66972 5.97442 6.68800 6.72895 6.94080 7.38278 7.62440 8.58449 9.26360 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.022972 B = 0.002556 C = 0.002396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1218.594586 B =10950.889574 C =11682.958379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.216 4.216 3 C -0.014 4.014 4 C -0.113 4.113 5 C -0.109 4.109 6 C -0.104 4.104 7 C -0.129 4.129 8 C 0.499 3.501 9 O -0.599 6.599 10 N -0.714 5.714 11 C 0.158 3.842 12 C -0.118 4.118 13 C 0.162 3.838 14 N -0.645 5.645 15 C -0.233 4.233 16 H 0.079 0.921 17 C -0.070 4.070 18 N -0.951 5.951 19 Si 0.974 3.026 20 H -0.276 1.276 21 H -0.293 1.293 22 H -0.281 1.281 23 C 0.123 3.877 24 H 0.239 0.761 25 H 0.097 0.903 26 H 0.102 0.898 27 H 0.058 0.942 28 H 0.052 0.948 29 H 0.078 0.922 30 H 0.087 0.913 31 H 0.054 0.946 32 H 0.043 0.957 33 H 0.113 0.887 34 H 0.128 0.872 35 H 0.416 0.584 36 H 0.065 0.935 37 H 0.026 0.974 38 H 0.116 0.884 39 H 0.024 0.976 40 H 0.041 0.959 41 H 0.247 0.753 42 H 0.052 0.948 43 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.429 -20.019 4.762 23.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.216 4.216 3 C -0.050 4.050 4 C -0.151 4.151 5 C -0.146 4.146 6 C -0.142 4.142 7 C -0.168 4.168 8 C 0.288 3.712 9 O -0.480 6.480 10 N -0.366 5.366 11 C 0.034 3.966 12 C -0.138 4.138 13 C 0.037 3.963 14 N -0.372 5.372 15 C -0.361 4.361 16 H 0.097 0.903 17 C -0.263 4.263 18 N -0.601 5.601 19 Si 0.802 3.198 20 H -0.202 1.202 21 H -0.219 1.219 22 H -0.208 1.208 23 C -0.002 4.002 24 H 0.255 0.745 25 H 0.116 0.884 26 H 0.120 0.880 27 H 0.077 0.923 28 H 0.070 0.930 29 H 0.097 0.903 30 H 0.105 0.895 31 H 0.073 0.927 32 H 0.062 0.938 33 H 0.131 0.869 34 H 0.146 0.854 35 H 0.253 0.747 36 H 0.083 0.917 37 H 0.045 0.955 38 H 0.134 0.866 39 H 0.042 0.958 40 H 0.059 0.941 41 H 0.056 0.944 42 H 0.070 0.930 43 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -11.962 -19.176 4.791 23.103 hybrid contribution 0.216 1.278 -0.811 1.529 sum -11.747 -17.898 3.980 21.775 Atomic orbital electron populations 1.25710 0.97090 1.00418 1.00883 1.23945 0.95921 1.00959 1.00801 1.18881 0.83569 0.99022 1.03532 1.21498 0.96204 0.96355 1.01035 1.21551 0.93963 0.96589 1.02539 1.21303 0.93410 0.98180 1.01327 1.21734 0.97331 0.93495 1.04258 1.21657 0.81822 0.90411 0.77342 1.90675 1.56563 1.49242 1.51548 1.45952 1.07411 1.18656 1.64617 1.20700 0.92762 0.85421 0.97747 1.23139 0.93524 0.99125 0.97973 1.22302 0.96349 0.83060 0.94594 1.46442 1.86240 1.01544 1.03019 1.19358 1.42240 0.83843 0.90692 0.90327 1.25571 1.03364 1.01018 0.96301 1.69973 1.58451 1.29518 1.02133 0.85217 0.78109 0.79638 0.76796 1.20201 1.21929 1.20752 1.22780 0.98202 0.91218 0.88014 0.74453 0.88437 0.87993 0.92343 0.92957 0.90326 0.89481 0.92695 0.93840 0.86896 0.85417 0.74690 0.91717 0.95547 0.86617 0.95820 0.94055 0.94420 0.93023 0.92291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -3.55 19.25 74.32 1.43 -2.11 16 2 C -0.22 -3.77 13.34 31.13 0.42 -3.36 16 3 C -0.01 -0.17 5.70 28.79 0.16 -0.01 16 4 C -0.11 -1.65 5.17 30.59 0.16 -1.49 16 5 C -0.11 -1.34 5.21 30.59 0.16 -1.18 16 6 C -0.10 -2.02 4.50 30.60 0.14 -1.88 16 7 C -0.13 -2.28 5.70 29.85 0.17 -2.11 16 8 C 0.50 14.68 7.83 87.66 0.69 15.37 16 9 O -0.60 -24.01 15.98 -3.01 -0.05 -24.06 16 10 N -0.71 -19.88 5.56 -463.05 -2.57 -22.45 16 11 C 0.16 5.58 5.42 86.38 0.47 6.05 16 12 C -0.12 -3.97 3.99 -10.13 -0.04 -4.01 16 13 C 0.16 7.38 7.03 86.44 0.61 7.99 16 14 N -0.65 -33.09 3.59 -716.10 -2.57 -35.65 16 15 C -0.23 -13.39 10.70 84.03 0.90 -12.49 16 16 H 0.08 4.36 7.83 -2.91 -0.02 4.34 16 17 C -0.07 -4.08 5.50 84.86 0.47 -3.61 16 18 N -0.95 -58.23 11.39 21.65 0.25 -57.99 16 19 Si 0.97 47.23 29.55 68.60 2.03 49.25 16 20 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 21 H -0.29 -14.22 7.11 99.48 0.71 -13.52 16 22 H -0.28 -13.35 7.11 99.48 0.71 -12.64 16 23 C 0.12 4.74 8.51 86.49 0.74 5.47 16 24 H 0.24 2.08 7.80 -4.41 -0.03 2.05 16 25 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 26 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 27 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 28 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 29 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 30 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 31 H 0.05 1.21 8.10 -2.39 -0.02 1.19 16 32 H 0.04 1.07 8.10 -2.39 -0.02 1.05 16 33 H 0.11 1.62 8.14 -2.39 -0.02 1.60 16 34 H 0.13 1.37 8.14 -2.39 -0.02 1.35 16 35 H 0.42 8.48 8.47 -92.71 -0.79 7.70 16 36 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 37 H 0.03 1.22 7.98 -2.39 -0.02 1.20 16 38 H 0.12 2.85 8.14 -2.39 -0.02 2.83 16 39 H 0.02 1.09 8.14 -2.39 -0.02 1.07 16 40 H 0.04 2.15 7.12 -2.39 -0.02 2.13 16 41 H 0.25 14.75 8.31 -92.71 -0.77 13.98 16 42 H 0.05 1.92 8.10 -2.39 -0.02 1.90 16 43 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 Total: -1.00 -78.44 364.77 3.73 -74.72 By element: Atomic # 1 Polarization: 13.39 SS G_CDS: 0.18 Total: 13.57 kcal Atomic # 6 Polarization: -3.86 SS G_CDS: 6.46 Total: 2.61 kcal Atomic # 7 Polarization: -111.20 SS G_CDS: -4.89 Total: -116.09 kcal Atomic # 8 Polarization: -24.01 SS G_CDS: -0.05 Total: -24.06 kcal Atomic # 14 Polarization: 47.23 SS G_CDS: 2.03 Total: 49.25 kcal Total: -78.44 3.73 -74.72 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713913220.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.647 kcal (2) G-P(sol) polarization free energy of solvation -78.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.717 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds