Wall clock time and date at job start Tue Mar 31 2020 00:44:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50706 * 109.46867 * 2 1 4 4 C 1.32993 * 119.99736 * 121.25878 * 3 2 1 5 5 C 1.50699 * 120.00480 * 5.27463 * 4 3 2 6 6 C 1.47101 * 119.99632 * 185.27528 * 4 3 2 7 7 O 1.21615 * 120.00219 * 107.50791 * 6 4 3 8 8 N 1.34776 * 120.00151 * 287.50947 * 6 4 3 9 9 C 1.47167 * 120.71127 * 175.15341 * 8 6 4 10 10 C 1.53889 * 108.03104 * 132.77674 * 9 8 6 11 11 H 1.09003 * 112.09498 * 181.90905 * 10 9 8 12 12 C 1.54546 * 107.83313 * 305.86832 * 10 9 8 13 13 C 1.55857 * 104.09502 * 89.27389 * 12 10 9 14 14 C 1.54549 * 104.99831 * 359.97438 * 13 12 10 15 15 H 1.08997 * 112.68097 * 146.70003 * 14 13 12 16 16 C 1.47163 * 120.71026 * 355.17166 * 8 6 4 17 17 N 1.48300 * 104.35857 * 24.70816 * 14 13 12 18 18 C 1.36942 * 128.07572 * 139.69293 * 17 14 13 19 19 H 1.08002 * 119.99327 * 335.87484 * 18 17 14 20 20 C 1.38808 * 120.00142 * 155.87518 * 18 17 14 21 21 N 1.31612 * 120.00254 * 4.51602 * 20 18 17 22 22 Si 1.86806 * 119.99855 * 184.50600 * 20 18 17 23 23 H 1.48502 * 109.47016 * 0.02562 * 22 20 18 24 24 H 1.48497 * 109.46549 * 120.00189 * 22 20 18 25 25 H 1.48493 * 109.47159 * 240.00476 * 22 20 18 26 26 H 1.09001 * 109.46643 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47198 * 299.99517 * 1 2 3 28 28 H 1.08994 * 109.47278 * 60.00362 * 1 2 3 29 29 H 1.08997 * 109.47837 * 240.00081 * 2 1 3 30 30 H 1.09003 * 109.47229 * 119.99441 * 2 1 3 31 31 H 1.07997 * 120.00081 * 301.26090 * 3 2 1 32 32 H 1.08993 * 109.47185 * 174.94841 * 5 4 3 33 33 H 1.08997 * 109.47058 * 294.95161 * 5 4 3 34 34 H 1.09006 * 109.47085 * 54.94946 * 5 4 3 35 35 H 1.08995 * 109.74857 * 13.14853 * 9 8 6 36 36 H 1.08991 * 109.78914 * 252.43468 * 9 8 6 37 37 H 1.08995 * 110.36367 * 208.52533 * 12 10 9 38 38 H 1.09001 * 110.36350 * 330.83593 * 12 10 9 39 39 H 1.09000 * 110.27901 * 241.10211 * 13 12 10 40 40 H 1.08998 * 110.38822 * 118.93456 * 13 12 10 41 41 H 1.09001 * 109.74843 * 346.86163 * 16 8 6 42 42 H 1.09004 * 109.75127 * 107.58711 * 16 8 6 43 43 H 0.97003 * 120.00111 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.8174 1.8486 0.9846 5 6 3.3017 0.8833 2.0356 6 6 3.2130 3.2640 1.0476 7 8 2.7332 3.9924 1.8952 8 7 4.1072 3.7537 0.1662 9 6 4.4348 5.1883 0.1464 10 6 5.9668 5.3264 0.0988 11 1 6.2852 6.3688 0.1157 12 6 6.5517 4.5186 1.2794 13 6 6.7609 3.0892 0.6945 14 6 6.2817 3.1830 -0.7719 15 1 6.8484 2.5360 -1.4414 16 6 4.7766 2.8654 -0.7974 17 7 6.4331 4.6172 -1.1172 18 6 6.8851 5.1603 -2.2903 19 1 7.5308 4.5857 -2.9377 20 6 6.5133 6.4492 -2.6471 21 7 5.8001 7.1817 -1.8182 22 14 7.0254 7.1442 -4.3036 23 1 7.8152 6.1277 -5.0441 24 1 5.8148 7.4974 -5.0878 25 1 7.8528 8.3597 -4.0961 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5137 0.8900 28 1 -0.3633 0.5137 -0.8900 29 1 1.8934 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 1.7546 2.0918 -0.7995 32 1 3.9992 1.3912 2.7015 33 1 2.4519 0.5163 2.6110 34 1 3.8043 0.0442 1.5544 35 1 4.0497 5.6665 1.0469 36 1 3.9954 5.6550 -0.7351 37 1 7.4979 4.9517 1.6035 38 1 5.8433 4.4900 2.1073 39 1 6.1601 2.3645 1.2440 40 1 7.8148 2.8138 0.7325 41 1 4.6147 1.8255 -0.5137 42 1 4.3799 3.0409 -1.7974 43 1 5.5406 8.0825 -2.0674 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714853668.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:44:59 Heat of formation + Delta-G solvation = -9.622359 kcal Electronic energy + Delta-G solvation = -23160.702586 eV Core-core repulsion = 20013.074171 eV Total energy + Delta-G solvation = -3147.628415 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.62397 -39.47529 -37.11510 -35.36623 -34.14898 -32.77237 -32.00072 -31.01366 -28.22444 -27.70489 -25.90183 -25.48554 -24.33522 -21.93110 -21.27829 -20.54629 -19.53295 -18.37083 -17.63518 -16.99739 -16.87997 -16.58357 -15.69691 -15.45977 -15.26205 -14.69263 -14.58756 -14.54848 -14.37803 -13.96123 -13.56928 -13.41730 -13.32269 -13.11748 -12.98581 -12.84502 -12.80082 -12.71812 -12.56797 -12.26581 -11.94947 -11.79618 -11.68070 -11.63256 -11.47102 -11.15367 -10.80049 -10.60344 -9.84849 -9.76235 -8.62955 -7.88189 -5.29090 0.81744 1.47124 1.49219 1.58215 1.66590 2.18153 2.49617 3.31979 3.48493 3.58770 4.01183 4.06100 4.13921 4.23391 4.25822 4.31961 4.33034 4.42038 4.51807 4.57582 4.70062 4.77697 4.81284 4.84338 4.86787 4.97114 5.03727 5.05174 5.08867 5.11415 5.14184 5.20892 5.28876 5.37478 5.39705 5.53171 5.57601 5.59380 5.69754 5.82563 6.25237 6.58499 7.04983 7.17953 7.70604 8.53353 9.23642 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.022426 B = 0.005365 C = 0.005016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1248.232092 B = 5218.203264 C = 5581.186165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.094 4.094 3 C -0.107 4.107 4 C -0.170 4.170 5 C -0.096 4.096 6 C 0.542 3.458 7 O -0.601 6.601 8 N -0.587 5.587 9 C 0.125 3.875 10 C 0.166 3.834 11 H 0.076 0.924 12 C -0.129 4.129 13 C -0.110 4.110 14 C 0.128 3.872 15 H 0.097 0.903 16 C 0.106 3.894 17 N -0.603 5.603 18 C -0.236 4.236 19 H 0.081 0.919 20 C -0.049 4.049 21 N -0.936 5.936 22 Si 0.969 3.031 23 H -0.264 1.264 24 H -0.297 1.297 25 H -0.296 1.296 26 H 0.077 0.923 27 H 0.045 0.955 28 H 0.050 0.950 29 H 0.094 0.906 30 H 0.090 0.910 31 H 0.096 0.904 32 H 0.049 0.951 33 H 0.084 0.916 34 H 0.102 0.898 35 H 0.052 0.948 36 H 0.040 0.960 37 H 0.057 0.943 38 H 0.050 0.950 39 H 0.074 0.926 40 H 0.071 0.929 41 H 0.107 0.893 42 H 0.047 0.953 43 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.240 -17.240 3.682 18.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.130 4.130 3 C -0.126 4.126 4 C -0.173 4.173 5 C -0.153 4.153 6 C 0.332 3.668 7 O -0.484 6.484 8 N -0.317 5.317 9 C 0.000 4.000 10 C 0.059 3.941 11 H 0.094 0.906 12 C -0.169 4.169 13 C -0.148 4.148 14 C 0.021 3.979 15 H 0.115 0.885 16 C -0.018 4.018 17 N -0.325 5.325 18 C -0.365 4.365 19 H 0.099 0.901 20 C -0.244 4.244 21 N -0.583 5.583 22 Si 0.799 3.201 23 H -0.188 1.188 24 H -0.225 1.225 25 H -0.224 1.224 26 H 0.096 0.904 27 H 0.064 0.936 28 H 0.069 0.931 29 H 0.112 0.888 30 H 0.109 0.891 31 H 0.114 0.886 32 H 0.069 0.931 33 H 0.102 0.898 34 H 0.120 0.880 35 H 0.070 0.930 36 H 0.059 0.941 37 H 0.076 0.924 38 H 0.069 0.931 39 H 0.093 0.907 40 H 0.090 0.910 41 H 0.125 0.875 42 H 0.065 0.935 43 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -4.439 -16.652 3.928 17.675 hybrid contribution -0.051 1.675 -0.962 1.933 sum -4.490 -14.976 2.966 15.914 Atomic orbital electron populations 1.21704 0.94582 1.02698 1.01544 1.20775 0.96364 0.91332 1.04575 1.23450 0.95165 0.98953 0.95033 1.21422 1.03403 0.91731 1.00776 1.20701 1.01569 0.97021 0.95993 1.19367 0.78122 0.89342 0.79980 1.90718 1.57310 1.61722 1.38633 1.48295 1.40218 1.08994 1.34174 1.21991 0.98808 0.80039 0.99120 1.21635 0.89870 0.97041 0.85597 0.90580 1.22786 0.99655 0.97219 0.97195 1.22657 1.01127 0.95667 0.95388 1.22247 0.93093 0.86999 0.95609 0.88496 1.22503 0.94541 0.93702 0.91085 1.45280 1.74891 1.00779 1.11539 1.19314 1.22669 0.98400 0.96070 0.90101 1.25736 0.99333 0.98550 1.00781 1.70033 1.42551 1.09499 1.36176 0.85155 0.76776 0.77933 0.80284 1.18801 1.22459 1.22372 0.90423 0.93573 0.93081 0.88801 0.89122 0.88570 0.93140 0.89769 0.87996 0.92971 0.94125 0.92449 0.93132 0.90749 0.90999 0.87466 0.93485 0.94350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.17 9.89 71.98 0.71 -1.46 16 2 C -0.09 -1.40 6.19 29.85 0.18 -1.22 16 3 C -0.11 -2.47 8.62 24.52 0.21 -2.26 16 4 C -0.17 -4.63 4.04 -18.70 -0.08 -4.70 16 5 C -0.10 -1.91 8.55 71.24 0.61 -1.30 16 6 C 0.54 20.69 7.00 86.57 0.61 21.29 16 7 O -0.60 -27.98 16.57 -4.08 -0.07 -28.05 16 8 N -0.59 -23.18 2.26 -819.33 -1.85 -25.03 16 9 C 0.12 5.95 5.78 86.55 0.50 6.45 16 10 C 0.17 7.91 3.08 45.47 0.14 8.05 16 11 H 0.08 4.22 6.48 -2.39 -0.02 4.20 16 12 C -0.13 -5.07 6.32 32.11 0.20 -4.87 16 13 C -0.11 -3.58 6.22 32.11 0.20 -3.38 16 14 C 0.13 4.66 4.32 45.46 0.20 4.86 16 15 H 0.10 3.19 8.14 -2.39 -0.02 3.17 16 16 C 0.11 3.60 5.52 86.54 0.48 4.08 16 17 N -0.60 -28.67 2.80 -636.81 -1.79 -30.45 16 18 C -0.24 -12.31 10.35 84.03 0.87 -11.44 16 19 H 0.08 4.04 7.83 -2.91 -0.02 4.02 16 20 C -0.05 -2.66 5.49 84.86 0.47 -2.19 16 21 N -0.94 -53.89 10.18 21.65 0.22 -53.67 16 22 Si 0.97 44.10 29.56 68.60 2.03 46.12 16 23 H -0.26 -11.22 7.11 99.48 0.71 -10.51 16 24 H -0.30 -13.78 7.11 99.48 0.71 -13.07 16 25 H -0.30 -13.66 7.11 99.48 0.71 -12.95 16 26 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 27 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 28 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 29 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 30 H 0.09 1.11 5.88 -2.39 -0.01 1.09 16 31 H 0.10 2.53 8.05 -2.91 -0.02 2.51 16 32 H 0.05 1.14 7.99 -2.39 -0.02 1.12 16 33 H 0.08 1.44 7.78 -2.39 -0.02 1.42 16 34 H 0.10 1.40 7.79 -2.38 -0.02 1.38 16 35 H 0.05 2.58 7.08 -2.39 -0.02 2.57 16 36 H 0.04 2.22 7.61 -2.39 -0.02 2.20 16 37 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 38 H 0.05 1.99 7.83 -2.39 -0.02 1.97 16 39 H 0.07 2.12 7.84 -2.39 -0.02 2.10 16 40 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 41 H 0.11 2.80 6.33 -2.39 -0.02 2.79 16 42 H 0.05 1.76 8.14 -2.38 -0.02 1.74 16 43 H 0.25 14.04 8.31 -92.71 -0.77 13.26 16 Total: -1.00 -67.24 335.99 4.82 -62.41 By element: Atomic # 1 Polarization: 15.76 SS G_CDS: 0.97 Total: 16.74 kcal Atomic # 6 Polarization: 6.61 SS G_CDS: 5.30 Total: 11.91 kcal Atomic # 7 Polarization: -105.73 SS G_CDS: -3.41 Total: -109.14 kcal Atomic # 8 Polarization: -27.98 SS G_CDS: -0.07 Total: -28.05 kcal Atomic # 14 Polarization: 44.10 SS G_CDS: 2.03 Total: 46.12 kcal Total: -67.24 4.82 -62.41 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714853668.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.793 kcal (2) G-P(sol) polarization free energy of solvation -67.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.415 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds