Wall clock time and date at job start Tue Mar 31 2020 00:47:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17397 * 1 3 3 C 1.47207 * 179.97438 * 2 1 4 4 C 1.52996 * 109.47107 * 77.06678 * 3 2 1 5 5 C 1.52999 * 109.46862 * 179.97438 * 4 3 2 6 6 C 1.50707 * 109.47161 * 180.02562 * 5 4 3 7 7 O 1.21286 * 119.99413 * 0.02562 * 6 5 4 8 8 N 1.34775 * 120.00226 * 180.02562 * 6 5 4 9 9 C 1.46498 * 119.99818 * 180.02562 * 8 6 5 10 10 C 1.53007 * 109.46789 * 180.02562 * 9 8 6 11 11 C 1.53000 * 109.46856 * 180.02562 * 10 9 8 12 12 H 1.09001 * 110.91988 * 51.09207 * 11 10 9 13 13 C 1.55157 * 111.00230 * 174.99947 * 11 10 9 14 14 C 1.54321 * 103.10033 * 153.66249 * 13 11 10 15 15 N 1.47019 * 107.27531 * 337.71659 * 14 13 11 16 16 C 1.36934 * 125.65046 * 178.97751 * 15 14 13 17 17 H 1.08001 * 119.99839 * 179.97438 * 16 15 14 18 18 C 1.38816 * 120.00199 * 359.97423 * 16 15 14 19 19 N 1.31622 * 119.99707 * 359.97438 * 18 16 15 20 20 Si 1.86796 * 120.00112 * 180.02562 * 18 16 15 21 21 H 1.48496 * 109.47000 * 60.00290 * 20 18 16 22 22 H 1.48504 * 109.47170 * 179.97438 * 20 18 16 23 23 H 1.48502 * 109.47305 * 299.99926 * 20 18 16 24 24 C 1.47431 * 108.70142 * 358.94050 * 15 14 13 25 25 H 4.44646 * 5.63433 * 180.02562 * 4 1 2 26 26 H 1.09004 * 109.46601 * 317.06848 * 3 2 1 27 27 H 1.08993 * 109.46960 * 197.07120 * 3 2 1 28 28 H 1.09005 * 109.46774 * 60.00359 * 4 3 2 29 29 H 1.08993 * 109.47572 * 300.00067 * 4 3 2 30 30 H 1.08996 * 109.46711 * 60.01034 * 5 4 3 31 31 H 1.08993 * 109.47445 * 300.00589 * 5 4 3 32 32 H 0.96993 * 119.99531 * 0.02562 * 8 6 5 33 33 H 1.08993 * 109.47247 * 59.99881 * 9 8 6 34 34 H 1.09003 * 109.47089 * 299.99860 * 9 8 6 35 35 H 1.08995 * 109.46788 * 59.99852 * 10 9 8 36 36 H 1.08993 * 109.46922 * 299.99764 * 10 9 8 37 37 H 1.09002 * 110.72219 * 35.20946 * 13 11 10 38 38 H 1.09003 * 110.71618 * 272.11558 * 13 11 10 39 39 H 1.09001 * 109.88480 * 97.13771 * 14 13 11 40 40 H 1.09003 * 109.88132 * 218.14177 * 14 13 11 41 41 H 0.96993 * 119.99930 * 179.97438 * 19 18 16 42 42 H 1.08999 * 110.36190 * 142.96411 * 24 15 14 43 43 H 1.08998 * 110.36491 * 265.18090 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1562 -0.3220 -1.4059 5 6 4.6862 -0.3206 -1.4059 6 6 5.1887 -0.6378 -2.7909 7 8 4.4006 -0.8441 -3.6894 8 7 6.5138 -0.6922 -3.0309 9 6 7.0022 -1.0000 -4.3774 10 6 8.5323 -1.0000 -4.3771 11 6 9.0424 -1.3208 -5.7835 12 1 8.5694 -0.6773 -6.5253 13 6 10.5883 -1.2074 -5.8536 14 6 10.9574 -2.1655 -7.0057 15 7 9.8505 -3.1224 -7.1494 16 6 9.7799 -4.1278 -8.0763 17 1 8.9202 -4.7811 -8.0999 18 6 10.8133 -4.3074 -8.9856 19 7 11.8607 -3.5109 -8.9571 20 14 10.7166 -5.6785 -10.2505 21 1 9.5179 -5.4806 -11.1044 22 1 11.9361 -5.6573 -11.0977 23 1 10.6189 -6.9872 -9.5556 24 6 8.8294 -2.8206 -6.1296 25 1 -1.0500 0.0002 -0.0002 26 1 3.0096 -0.7516 0.7000 27 1 3.0089 0.9832 0.3017 28 1 2.7925 0.4304 -2.1058 29 1 2.7933 -1.3045 -1.7075 30 1 5.0501 -1.0727 -0.7060 31 1 5.0487 0.6620 -1.1044 32 1 7.1440 -0.5276 -2.3122 33 1 6.6387 -0.2472 -5.0767 34 1 6.6393 -1.9823 -4.6798 35 1 8.8954 -1.7531 -3.6779 36 1 8.8956 -0.0180 -4.0745 37 1 11.0419 -1.5359 -4.9185 38 1 10.8897 -0.1867 -6.0892 39 1 11.0830 -1.6024 -7.9304 40 1 11.8795 -2.6951 -6.7663 41 1 12.5830 -3.6366 -9.5922 42 1 7.8300 -2.9776 -6.5354 43 1 8.9810 -3.4406 -5.2460 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714873900.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:47:43 Heat of formation + Delta-G solvation = 14.807344 kcal Electronic energy + Delta-G solvation = -20517.124717 eV Core-core repulsion = 17370.555653 eV Total energy + Delta-G solvation = -3146.569063 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.85155 -37.78901 -36.01566 -35.14601 -33.04597 -32.55823 -30.86712 -29.10753 -28.24308 -26.40481 -24.66212 -22.94907 -21.97673 -20.54912 -19.97028 -19.43158 -18.51217 -16.97901 -16.84869 -16.31942 -15.86002 -15.39523 -14.78681 -14.57474 -14.44371 -13.90931 -13.80613 -13.66994 -12.87705 -12.80447 -12.44323 -12.19125 -11.95794 -11.86675 -11.79285 -11.51238 -11.31347 -11.08624 -10.85105 -10.72989 -10.54002 -10.40868 -10.13455 -10.09580 -9.93883 -9.80109 -9.70739 -9.57769 -9.09880 -8.55600 -6.78025 -5.66900 -2.99954 2.48690 2.53807 2.55948 3.11368 3.43701 3.47584 3.48961 4.04315 4.48786 4.54034 4.65900 4.73557 4.93065 5.08978 5.12485 5.13443 5.24245 5.25947 5.32724 5.51300 5.62383 5.67863 5.72163 5.78301 5.80290 5.90205 5.96654 6.03882 6.14570 6.22843 6.40215 6.42749 6.57986 6.62502 6.76410 7.00391 7.32020 7.40671 7.60625 7.67362 7.86945 8.14519 8.31108 9.27113 9.87599 10.54180 11.44866 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.034119 B = 0.002388 C = 0.002259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 820.460067 B =11723.624777 C =12392.784378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.186 4.186 3 C -0.014 4.014 4 C -0.100 4.100 5 C -0.141 4.141 6 C 0.507 3.493 7 O -0.540 6.540 8 N -0.731 5.731 9 C 0.117 3.883 10 C -0.115 4.115 11 C -0.101 4.101 12 H 0.076 0.924 13 C -0.138 4.138 14 C 0.177 3.823 15 N -0.607 5.607 16 C -0.227 4.227 17 H 0.077 0.923 18 C -0.010 4.010 19 N -0.923 5.923 20 Si 0.912 3.088 21 H -0.285 1.285 22 H -0.290 1.290 23 H -0.285 1.285 24 C 0.140 3.860 25 H 0.216 0.784 26 H 0.087 0.913 27 H 0.087 0.913 28 H 0.074 0.926 29 H 0.075 0.925 30 H 0.095 0.905 31 H 0.095 0.905 32 H 0.399 0.601 33 H 0.066 0.934 34 H 0.071 0.929 35 H 0.068 0.932 36 H 0.064 0.936 37 H 0.055 0.945 38 H 0.057 0.943 39 H 0.045 0.955 40 H 0.041 0.959 41 H 0.252 0.748 42 H 0.037 0.963 43 H 0.017 0.983 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.674 9.808 19.620 25.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.186 4.186 3 C -0.050 4.050 4 C -0.138 4.138 5 C -0.181 4.181 6 C 0.293 3.707 7 O -0.417 6.417 8 N -0.382 5.382 9 C -0.006 4.006 10 C -0.153 4.153 11 C -0.121 4.121 12 H 0.094 0.906 13 C -0.177 4.177 14 C 0.052 3.948 15 N -0.333 5.333 16 C -0.355 4.355 17 H 0.095 0.905 18 C -0.206 4.206 19 N -0.571 5.571 20 Si 0.743 3.257 21 H -0.212 1.212 22 H -0.216 1.216 23 H -0.212 1.212 24 C 0.014 3.986 25 H 0.233 0.767 26 H 0.105 0.895 27 H 0.105 0.895 28 H 0.093 0.907 29 H 0.094 0.906 30 H 0.114 0.886 31 H 0.113 0.887 32 H 0.233 0.767 33 H 0.085 0.915 34 H 0.090 0.910 35 H 0.087 0.913 36 H 0.083 0.917 37 H 0.074 0.926 38 H 0.076 0.924 39 H 0.063 0.937 40 H 0.059 0.941 41 H 0.062 0.938 42 H 0.055 0.945 43 H 0.035 0.965 Dipole moment (debyes) X Y Z Total from point charges -13.085 9.562 18.756 24.788 hybrid contribution 0.208 -0.647 -0.362 0.770 sum -12.877 8.915 18.394 24.158 Atomic orbital electron populations 1.24927 0.96037 1.01215 1.00695 1.23108 0.94603 1.00366 1.00527 1.18772 0.84890 1.03074 0.98276 1.21283 0.93003 1.04050 0.95507 1.21680 0.97418 1.04080 0.94919 1.20673 0.82322 0.76854 0.90805 1.90735 1.55285 1.48971 1.46719 1.46120 1.07006 1.72298 1.12824 1.21492 0.94511 1.01778 0.82865 1.21732 0.93173 1.01835 0.98609 1.22350 0.96676 0.98628 0.94450 0.90608 1.22899 0.94319 1.00038 1.00424 1.21127 0.90849 0.89147 0.93657 1.44474 1.18167 1.35166 1.35499 1.19032 1.03329 1.05912 1.07272 0.90545 1.24808 0.96788 0.99421 0.99622 1.69961 1.09024 1.39419 1.38726 0.86192 0.76810 0.81548 0.81179 1.21178 1.21628 1.21210 1.21690 0.93106 0.91683 0.92127 0.76707 0.89453 0.89487 0.90704 0.90645 0.88631 0.88695 0.76703 0.91520 0.91032 0.91312 0.91686 0.92618 0.92396 0.93728 0.94118 0.93787 0.94518 0.96538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -1.72 19.25 29.55 0.57 -1.15 16 2 C -0.19 -1.63 13.34 -37.12 -0.50 -2.13 16 3 C -0.01 -0.09 5.70 -29.52 -0.17 -0.25 16 4 C -0.10 -0.80 4.46 -26.73 -0.12 -0.92 16 5 C -0.14 -0.93 5.70 -27.88 -0.16 -1.09 16 6 C 0.51 5.63 7.83 -10.98 -0.09 5.55 16 7 O -0.54 -8.61 15.98 5.55 0.09 -8.52 16 8 N -0.73 -7.18 5.56 -60.29 -0.33 -7.51 16 9 C 0.12 1.45 5.58 -4.04 -0.02 1.43 16 10 C -0.12 -1.41 4.85 -26.73 -0.13 -1.54 16 11 C -0.10 -1.69 3.02 -88.21 -0.27 -1.96 16 12 H 0.08 1.31 8.14 -51.93 -0.42 0.88 16 13 C -0.14 -2.52 6.40 -24.90 -0.16 -2.68 16 14 C 0.18 4.35 5.37 -3.07 -0.02 4.33 16 15 N -0.61 -15.85 3.40 -169.76 -0.58 -16.43 16 16 C -0.23 -6.50 10.28 -15.06 -0.15 -6.65 16 17 H 0.08 2.11 7.83 -52.49 -0.41 1.70 16 18 C -0.01 -0.30 5.49 -17.43 -0.10 -0.40 16 19 N -0.92 -27.61 10.31 55.49 0.57 -27.04 16 20 Si 0.91 22.55 29.55 -169.99 -5.02 17.53 16 21 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 22 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 23 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 24 C 0.14 2.91 6.23 -2.26 -0.01 2.90 16 25 H 0.22 1.04 7.80 -54.09 -0.42 0.62 16 26 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.07 0.71 8.10 -51.93 -0.42 0.29 16 29 H 0.07 0.73 8.10 -51.93 -0.42 0.31 16 30 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.40 2.62 8.47 -40.82 -0.35 2.27 16 33 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.07 1.04 7.77 -51.93 -0.40 0.63 16 35 H 0.07 0.81 7.98 -51.93 -0.41 0.40 16 36 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.06 0.94 8.04 -51.93 -0.42 0.52 16 38 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 39 H 0.04 1.21 7.38 -51.93 -0.38 0.83 16 40 H 0.04 1.10 7.51 -51.93 -0.39 0.71 16 41 H 0.25 7.32 8.31 -40.82 -0.34 6.98 16 42 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 43 H 0.02 0.35 7.93 -51.93 -0.41 -0.07 16 LS Contribution 358.11 15.07 5.40 5.40 Total: -1.00 -34.77 358.11 -8.57 -43.35 By element: Atomic # 1 Polarization: 5.15 SS G_CDS: -7.38 Total: -2.23 kcal Atomic # 6 Polarization: -3.23 SS G_CDS: -1.32 Total: -4.54 kcal Atomic # 7 Polarization: -50.64 SS G_CDS: -0.34 Total: -50.98 kcal Atomic # 8 Polarization: -8.61 SS G_CDS: 0.09 Total: -8.52 kcal Atomic # 14 Polarization: 22.55 SS G_CDS: -5.02 Total: 17.53 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -34.77 -8.57 -43.35 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714873900.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.153 kcal (2) G-P(sol) polarization free energy of solvation -34.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.345 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds