Wall clock time and date at job start Tue Mar 31 2020 00:47:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17397 * 1 3 3 C 1.47207 * 179.97438 * 2 1 4 4 C 1.52996 * 109.47107 * 77.06678 * 3 2 1 5 5 C 1.52999 * 109.46862 * 179.97438 * 4 3 2 6 6 C 1.50707 * 109.47161 * 180.02562 * 5 4 3 7 7 O 1.21286 * 119.99413 * 0.02562 * 6 5 4 8 8 N 1.34775 * 120.00226 * 180.02562 * 6 5 4 9 9 C 1.46498 * 119.99818 * 180.02562 * 8 6 5 10 10 C 1.53007 * 109.46789 * 180.02562 * 9 8 6 11 11 C 1.53000 * 109.46856 * 180.02562 * 10 9 8 12 12 H 1.09001 * 110.91988 * 51.09207 * 11 10 9 13 13 C 1.55157 * 111.00230 * 174.99947 * 11 10 9 14 14 C 1.54321 * 103.10033 * 153.66249 * 13 11 10 15 15 N 1.47019 * 107.27531 * 337.71659 * 14 13 11 16 16 C 1.36934 * 125.65046 * 178.97751 * 15 14 13 17 17 H 1.08001 * 119.99839 * 179.97438 * 16 15 14 18 18 C 1.38816 * 120.00199 * 359.97423 * 16 15 14 19 19 N 1.31622 * 119.99707 * 359.97438 * 18 16 15 20 20 Si 1.86796 * 120.00112 * 180.02562 * 18 16 15 21 21 H 1.48496 * 109.47000 * 60.00290 * 20 18 16 22 22 H 1.48504 * 109.47170 * 179.97438 * 20 18 16 23 23 H 1.48502 * 109.47305 * 299.99926 * 20 18 16 24 24 C 1.47431 * 108.70142 * 358.94050 * 15 14 13 25 25 H 4.44646 * 5.63433 * 180.02562 * 4 1 2 26 26 H 1.09004 * 109.46601 * 317.06848 * 3 2 1 27 27 H 1.08993 * 109.46960 * 197.07120 * 3 2 1 28 28 H 1.09005 * 109.46774 * 60.00359 * 4 3 2 29 29 H 1.08993 * 109.47572 * 300.00067 * 4 3 2 30 30 H 1.08996 * 109.46711 * 60.01034 * 5 4 3 31 31 H 1.08993 * 109.47445 * 300.00589 * 5 4 3 32 32 H 0.96993 * 119.99531 * 0.02562 * 8 6 5 33 33 H 1.08993 * 109.47247 * 59.99881 * 9 8 6 34 34 H 1.09003 * 109.47089 * 299.99860 * 9 8 6 35 35 H 1.08995 * 109.46788 * 59.99852 * 10 9 8 36 36 H 1.08993 * 109.46922 * 299.99764 * 10 9 8 37 37 H 1.09002 * 110.72219 * 35.20946 * 13 11 10 38 38 H 1.09003 * 110.71618 * 272.11558 * 13 11 10 39 39 H 1.09001 * 109.88480 * 97.13771 * 14 13 11 40 40 H 1.09003 * 109.88132 * 218.14177 * 14 13 11 41 41 H 0.96993 * 119.99930 * 179.97438 * 19 18 16 42 42 H 1.08999 * 110.36190 * 142.96411 * 24 15 14 43 43 H 1.08998 * 110.36491 * 265.18090 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1562 -0.3220 -1.4059 5 6 4.6862 -0.3206 -1.4059 6 6 5.1887 -0.6378 -2.7909 7 8 4.4006 -0.8441 -3.6894 8 7 6.5138 -0.6922 -3.0309 9 6 7.0022 -1.0000 -4.3774 10 6 8.5323 -1.0000 -4.3771 11 6 9.0424 -1.3208 -5.7835 12 1 8.5694 -0.6773 -6.5253 13 6 10.5883 -1.2074 -5.8536 14 6 10.9574 -2.1655 -7.0057 15 7 9.8505 -3.1224 -7.1494 16 6 9.7799 -4.1278 -8.0763 17 1 8.9202 -4.7811 -8.0999 18 6 10.8133 -4.3074 -8.9856 19 7 11.8607 -3.5109 -8.9571 20 14 10.7166 -5.6785 -10.2505 21 1 9.5179 -5.4806 -11.1044 22 1 11.9361 -5.6573 -11.0977 23 1 10.6189 -6.9872 -9.5556 24 6 8.8294 -2.8206 -6.1296 25 1 -1.0500 0.0002 -0.0002 26 1 3.0096 -0.7516 0.7000 27 1 3.0089 0.9832 0.3017 28 1 2.7925 0.4304 -2.1058 29 1 2.7933 -1.3045 -1.7075 30 1 5.0501 -1.0727 -0.7060 31 1 5.0487 0.6620 -1.1044 32 1 7.1440 -0.5276 -2.3122 33 1 6.6387 -0.2472 -5.0767 34 1 6.6393 -1.9823 -4.6798 35 1 8.8954 -1.7531 -3.6779 36 1 8.8956 -0.0180 -4.0745 37 1 11.0419 -1.5359 -4.9185 38 1 10.8897 -0.1867 -6.0892 39 1 11.0830 -1.6024 -7.9304 40 1 11.8795 -2.6951 -6.7663 41 1 12.5830 -3.6366 -9.5922 42 1 7.8300 -2.9776 -6.5354 43 1 8.9810 -3.4406 -5.2460 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714873900.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:47:42 Heat of formation + Delta-G solvation = -7.944364 kcal Electronic energy + Delta-G solvation = -20518.111305 eV Core-core repulsion = 17370.555653 eV Total energy + Delta-G solvation = -3147.555652 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.75154 -39.37072 -36.74003 -36.20922 -34.72317 -33.28076 -32.41364 -30.74862 -29.13143 -27.82798 -26.43477 -23.99426 -22.94427 -21.82582 -21.49443 -20.69849 -19.09683 -18.86125 -17.77341 -17.06985 -16.85697 -16.79366 -16.41272 -15.82331 -15.57719 -15.14149 -14.94006 -14.52955 -14.15285 -13.85198 -13.71288 -13.54285 -13.33644 -13.26908 -13.01426 -12.78780 -12.64418 -12.45500 -12.23534 -12.04958 -11.90077 -11.80050 -11.55011 -11.38247 -11.30993 -11.15786 -10.95040 -10.78333 -10.70323 -10.02955 -8.89096 -7.85792 -5.21046 1.43430 1.47193 1.53475 1.72605 1.86320 1.94059 2.31966 2.48876 3.31529 3.54898 3.68028 3.78876 3.85807 3.98917 4.12388 4.15958 4.21235 4.35869 4.38606 4.56827 4.62881 4.70255 4.72615 4.74866 4.80186 4.84665 4.93002 5.02320 5.14613 5.18930 5.23194 5.23621 5.27153 5.35720 5.43803 5.53453 5.53783 5.71258 5.79561 6.20705 6.66291 6.73758 7.10724 7.36910 7.78870 8.43123 9.24246 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.034119 B = 0.002388 C = 0.002259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 820.460067 B =11723.624777 C =12392.784378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.216 4.216 3 C -0.010 4.010 4 C -0.097 4.097 5 C -0.128 4.128 6 C 0.500 3.500 7 O -0.598 6.598 8 N -0.716 5.716 9 C 0.122 3.878 10 C -0.097 4.097 11 C -0.086 4.086 12 H 0.069 0.931 13 C -0.122 4.122 14 C 0.180 3.820 15 N -0.632 5.632 16 C -0.246 4.246 17 H 0.078 0.922 18 C -0.069 4.069 19 N -0.951 5.951 20 Si 0.980 3.020 21 H -0.278 1.278 22 H -0.292 1.292 23 H -0.276 1.276 24 C 0.133 3.867 25 H 0.237 0.763 26 H 0.107 0.893 27 H 0.109 0.891 28 H 0.051 0.949 29 H 0.049 0.951 30 H 0.127 0.873 31 H 0.129 0.871 32 H 0.420 0.580 33 H 0.053 0.947 34 H 0.045 0.955 35 H 0.082 0.918 36 H 0.098 0.902 37 H 0.077 0.923 38 H 0.081 0.919 39 H 0.006 0.994 40 H 0.004 0.996 41 H 0.247 0.753 42 H 0.029 0.971 43 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.834 10.701 22.285 27.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.216 4.216 3 C -0.046 4.046 4 C -0.135 4.135 5 C -0.168 4.168 6 C 0.288 3.712 7 O -0.479 6.479 8 N -0.369 5.369 9 C -0.003 4.003 10 C -0.135 4.135 11 C -0.106 4.106 12 H 0.087 0.913 13 C -0.160 4.160 14 C 0.055 3.945 15 N -0.358 5.358 16 C -0.375 4.375 17 H 0.096 0.904 18 C -0.262 4.262 19 N -0.600 5.600 20 Si 0.807 3.193 21 H -0.204 1.204 22 H -0.218 1.218 23 H -0.202 1.202 24 C 0.008 3.992 25 H 0.254 0.746 26 H 0.125 0.875 27 H 0.127 0.873 28 H 0.070 0.930 29 H 0.068 0.932 30 H 0.145 0.855 31 H 0.147 0.853 32 H 0.257 0.743 33 H 0.072 0.928 34 H 0.064 0.936 35 H 0.100 0.900 36 H 0.116 0.884 37 H 0.096 0.904 38 H 0.100 0.900 39 H 0.024 0.976 40 H 0.023 0.977 41 H 0.056 0.944 42 H 0.048 0.952 43 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -13.243 10.469 21.484 27.323 hybrid contribution 0.201 -0.941 -1.193 1.533 sum -13.042 9.528 20.291 25.934 Atomic orbital electron populations 1.25709 0.97164 1.01041 1.00266 1.23913 0.95972 1.00715 1.00982 1.18870 0.83541 1.04914 0.97268 1.21189 0.94331 1.01826 0.96189 1.21706 0.95917 1.06887 0.92248 1.21554 0.82074 0.75499 0.92039 1.90719 1.56732 1.51591 1.48890 1.45941 1.07223 1.71410 1.12319 1.21232 0.94789 1.00036 0.84216 1.21570 0.92455 1.04023 0.95461 1.22240 0.95725 0.95270 0.97387 0.91250 1.22760 0.95264 0.99481 0.98504 1.20948 0.89543 0.89392 0.94597 1.44833 1.19911 1.34930 1.36114 1.19428 1.03356 1.06688 1.08022 0.90422 1.25683 0.96639 1.02035 1.01824 1.70192 1.09513 1.40963 1.39329 0.85139 0.76677 0.78862 0.78585 1.20449 1.21778 1.20232 1.21917 0.91397 0.94871 0.90987 0.74600 0.87464 0.87293 0.93024 0.93244 0.85535 0.85252 0.74262 0.92813 0.93646 0.89965 0.88376 0.90388 0.89994 0.97574 0.97746 0.94404 0.95241 0.95626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.23 -3.49 19.25 74.32 1.43 -2.06 16 2 C -0.22 -3.58 13.34 31.13 0.42 -3.16 16 3 C -0.01 -0.10 5.70 28.79 0.16 0.06 16 4 C -0.10 -1.44 4.46 30.59 0.14 -1.31 16 5 C -0.13 -1.27 5.70 29.85 0.17 -1.10 16 6 C 0.50 10.24 7.83 87.66 0.69 10.93 16 7 O -0.60 -19.30 15.98 -3.05 -0.05 -19.35 16 8 N -0.72 -11.99 5.56 -463.05 -2.57 -14.56 16 9 C 0.12 2.81 5.58 86.38 0.48 3.30 16 10 C -0.10 -2.02 4.85 30.60 0.15 -1.87 16 11 C -0.09 -2.73 3.02 -9.23 -0.03 -2.76 16 12 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 13 C -0.12 -4.20 6.40 31.78 0.20 -4.00 16 14 C 0.18 9.06 5.37 86.73 0.47 9.53 16 15 N -0.63 -33.69 3.40 -691.01 -2.35 -36.03 16 16 C -0.25 -14.40 10.28 84.03 0.86 -13.54 16 17 H 0.08 4.38 7.83 -2.91 -0.02 4.36 16 18 C -0.07 -4.07 5.49 84.86 0.47 -3.60 16 19 N -0.95 -58.82 10.31 21.65 0.22 -58.59 16 20 Si 0.98 47.23 29.55 68.60 2.03 49.26 16 21 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 22 H -0.29 -14.01 7.11 99.48 0.71 -13.31 16 23 H -0.28 -12.81 7.11 99.48 0.71 -12.11 16 24 C 0.13 5.51 6.23 87.02 0.54 6.05 16 25 H 0.24 2.07 7.80 -4.42 -0.03 2.04 16 26 H 0.11 0.69 8.14 -2.39 -0.02 0.67 16 27 H 0.11 0.65 8.14 -2.39 -0.02 0.63 16 28 H 0.05 0.99 8.10 -2.38 -0.02 0.97 16 29 H 0.05 0.97 8.10 -2.39 -0.02 0.95 16 30 H 0.13 0.55 8.14 -2.39 -0.02 0.53 16 31 H 0.13 0.47 8.14 -2.39 -0.02 0.45 16 32 H 0.42 3.57 8.47 -92.71 -0.79 2.79 16 33 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 34 H 0.05 1.30 7.77 -2.39 -0.02 1.28 16 35 H 0.08 1.57 7.98 -2.39 -0.02 1.55 16 36 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16 37 H 0.08 2.37 8.04 -2.39 -0.02 2.35 16 38 H 0.08 2.46 8.14 -2.39 -0.02 2.44 16 39 H 0.01 0.34 7.38 -2.39 -0.02 0.32 16 40 H 0.00 0.24 7.51 -2.39 -0.02 0.23 16 41 H 0.25 14.81 8.31 -92.71 -0.77 14.04 16 42 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 43 H 0.03 1.03 7.93 -2.39 -0.02 1.01 16 Total: -1.00 -81.14 358.11 3.61 -77.52 By element: Atomic # 1 Polarization: 5.10 SS G_CDS: 0.18 Total: 5.28 kcal Atomic # 6 Polarization: -9.68 SS G_CDS: 6.15 Total: -3.53 kcal Atomic # 7 Polarization: -104.49 SS G_CDS: -4.70 Total: -109.19 kcal Atomic # 8 Polarization: -19.30 SS G_CDS: -0.05 Total: -19.35 kcal Atomic # 14 Polarization: 47.23 SS G_CDS: 2.03 Total: 49.26 kcal Total: -81.14 3.61 -77.52 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714873900.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.579 kcal (2) G-P(sol) polarization free energy of solvation -81.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.523 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds