Wall clock time and date at job start Tue Mar 31 2020 00:08:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.47107 * 119.99938 * 2 1 4 4 O 1.21609 * 119.99916 * 179.97438 * 3 2 1 5 5 N 1.34775 * 119.99816 * 0.02562 * 3 2 1 6 6 C 1.46501 * 120.00012 * 179.97438 * 5 3 2 7 7 C 1.52992 * 109.47274 * 179.97438 * 6 5 3 8 8 C 1.53952 * 113.74364 * 273.74167 * 7 6 5 9 9 N 1.47813 * 86.03906 * 222.08628 * 8 7 6 10 10 C 1.36936 * 134.45481 * 204.64746 * 9 8 7 11 11 H 1.08011 * 119.99621 * 179.86118 * 10 9 8 12 12 C 1.38803 * 120.00319 * 359.86034 * 10 9 8 13 13 N 1.31624 * 119.99916 * 0.02562 * 12 10 9 14 14 Si 1.86802 * 120.00353 * 179.97438 * 12 10 9 15 15 H 1.48502 * 109.46716 * 0.02562 * 14 12 10 16 16 H 1.48501 * 109.47159 * 120.00006 * 14 12 10 17 17 H 1.48497 * 109.47309 * 240.00307 * 14 12 10 18 18 C 1.47586 * 91.05214 * 24.54835 * 9 8 7 19 19 C 1.32991 * 120.00431 * 180.02562 * 2 1 3 20 20 C 1.51446 * 126.33559 * 359.97438 * 19 2 1 21 21 C 1.54282 * 106.84905 * 180.33712 * 20 19 2 22 22 C 1.54987 * 103.74985 * 23.12444 * 21 20 19 23 23 C 1.51843 * 126.34660 * 179.97438 * 19 2 1 24 24 H 1.08996 * 109.47163 * 269.99633 * 1 2 3 25 25 H 1.09005 * 109.47072 * 30.00205 * 1 2 3 26 26 H 1.09003 * 109.46954 * 149.99479 * 1 2 3 27 27 H 0.97002 * 120.00454 * 359.97438 * 5 3 2 28 28 H 1.08998 * 109.47140 * 299.99950 * 6 5 3 29 29 H 1.09010 * 109.46877 * 59.99981 * 6 5 3 30 30 H 1.09000 * 112.94939 * 45.33496 * 7 6 5 31 31 H 1.09007 * 113.76741 * 336.34749 * 8 7 6 32 32 H 1.08992 * 113.76940 * 107.74551 * 8 7 6 33 33 H 0.97005 * 119.99812 * 179.97438 * 13 12 10 34 34 H 1.09001 * 113.76956 * 221.15587 * 18 9 8 35 35 H 1.08993 * 113.76742 * 89.75593 * 18 9 8 36 36 H 1.08996 * 109.99044 * 299.68404 * 20 19 2 37 37 H 1.09005 * 109.98620 * 60.99354 * 20 19 2 38 38 H 1.08996 * 110.57285 * 141.69135 * 21 20 19 39 39 H 1.09005 * 110.57234 * 264.55907 * 21 20 19 40 40 H 1.08999 * 110.83018 * 204.70408 * 22 21 20 41 41 H 1.09001 * 110.83046 * 81.12560 * 22 21 20 42 42 H 1.09004 * 110.43923 * 274.96947 * 23 19 2 43 43 H 1.09001 * 110.44013 * 37.36013 * 23 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2425 1.2740 0.0000 4 8 3.4586 1.2740 0.0005 5 7 1.5686 2.4411 0.0005 6 6 2.3010 3.7099 0.0011 7 6 1.3068 4.8728 0.0010 8 6 0.8346 5.2845 -1.4053 9 7 0.9863 6.6780 -0.9365 10 6 0.4313 7.8769 -1.2969 11 1 0.7173 8.7814 -0.7803 12 6 -0.4985 7.9299 -2.3260 13 7 -0.8473 6.8276 -2.9552 14 14 -1.2561 9.5652 -2.8172 15 1 -0.7011 10.6446 -1.9616 16 1 -0.9398 9.8499 -4.2399 17 1 -2.7292 9.5012 -2.6409 18 6 1.9736 6.2583 0.0771 19 6 2.1720 -1.1517 -0.0005 20 6 1.5643 -2.5388 -0.0006 21 6 2.7372 -3.5410 0.0074 22 6 3.9137 -2.7264 0.6028 23 6 3.6812 -1.3194 -0.0011 24 1 -0.3633 -0.0001 1.0276 25 1 -0.3633 0.8900 -0.5139 26 1 -0.3633 -0.8900 -0.5139 27 1 0.5986 2.4412 0.0005 28 1 2.9277 3.7673 0.8911 29 1 2.9277 3.7680 -0.8890 30 1 0.4941 4.7371 0.7145 31 1 1.5289 5.0102 -2.1997 32 1 -0.1955 5.0026 -1.6229 33 1 -1.4975 6.8646 -3.6742 34 1 1.8510 6.7525 1.0409 35 1 3.0030 6.2708 -0.2808 36 1 0.9505 -2.6768 0.8895 37 1 0.9594 -2.6806 -0.8963 38 1 2.5052 -4.3972 0.6407 39 1 2.9707 -3.8656 -1.0067 40 1 4.8710 -3.1343 0.2784 41 1 3.8527 -2.6959 1.6907 42 1 4.0689 -1.2733 -1.0189 43 1 4.1494 -0.5548 0.6186 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714961906.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:08:43 Heat of formation + Delta-G solvation = 13.291089 kcal Electronic energy + Delta-G solvation = -21319.469488 eV Core-core repulsion = 18172.834675 eV Total energy + Delta-G solvation = -3146.634813 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.92687 -38.31009 -37.59646 -34.42103 -33.49021 -32.10446 -29.07212 -28.92065 -27.63279 -25.98518 -24.78844 -24.14877 -22.04749 -20.96761 -20.59909 -19.28107 -18.04812 -16.75293 -16.40556 -16.03901 -15.85877 -15.16475 -14.75709 -14.64491 -14.05141 -13.73578 -13.48326 -13.38226 -13.00694 -12.77504 -12.59868 -12.40566 -12.26810 -12.20030 -11.44835 -11.35797 -11.31966 -11.27591 -11.01932 -10.98985 -10.81854 -10.71353 -10.52776 -9.93177 -9.73063 -9.49859 -9.35597 -8.96844 -8.80060 -8.61024 -6.87061 -5.76578 -3.08592 1.38313 3.38662 3.41782 3.42255 3.44578 3.46752 4.30368 4.45648 4.49780 4.77030 4.85321 4.95525 5.07878 5.18777 5.23164 5.34359 5.37853 5.38878 5.51013 5.55524 5.59264 5.59811 5.67221 5.74658 5.81822 5.86867 5.87919 6.07075 6.08612 6.11605 6.26363 6.36791 6.41102 6.58140 6.59987 6.68459 6.81520 7.22856 7.36689 7.55812 7.78505 7.98453 8.46180 9.05156 9.71278 10.60650 11.40670 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.039197 B = 0.002960 C = 0.002830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 714.169545 B = 9458.110708 C = 9890.174559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.185 4.185 3 C 0.552 3.448 4 O -0.548 6.548 5 N -0.719 5.719 6 C 0.131 3.869 7 C -0.153 4.153 8 C 0.169 3.831 9 N -0.613 5.613 10 C -0.221 4.221 11 H 0.080 0.920 12 C -0.010 4.010 13 N -0.922 5.922 14 Si 0.912 3.088 15 H -0.280 1.280 16 H -0.291 1.291 17 H -0.290 1.290 18 C 0.128 3.872 19 C -0.043 4.043 20 C -0.099 4.099 21 C -0.125 4.125 22 C -0.128 4.128 23 C -0.100 4.100 24 H 0.070 0.930 25 H 0.068 0.932 26 H 0.068 0.932 27 H 0.401 0.599 28 H 0.061 0.939 29 H 0.067 0.933 30 H 0.089 0.911 31 H 0.027 0.973 32 H 0.072 0.928 33 H 0.252 0.748 34 H 0.045 0.955 35 H 0.036 0.964 36 H 0.079 0.921 37 H 0.080 0.920 38 H 0.068 0.932 39 H 0.068 0.932 40 H 0.069 0.931 41 H 0.067 0.933 42 H 0.082 0.918 43 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.970 -20.120 7.569 21.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.188 4.188 3 C 0.340 3.660 4 O -0.429 6.429 5 N -0.369 5.369 6 C 0.007 3.993 7 C -0.173 4.173 8 C 0.044 3.956 9 N -0.340 5.340 10 C -0.349 4.349 11 H 0.098 0.902 12 C -0.206 4.206 13 N -0.569 5.569 14 Si 0.742 3.258 15 H -0.205 1.205 16 H -0.218 1.218 17 H -0.217 1.217 18 C 0.002 3.998 19 C -0.045 4.045 20 C -0.135 4.135 21 C -0.163 4.163 22 C -0.165 4.165 23 C -0.136 4.136 24 H 0.088 0.912 25 H 0.087 0.913 26 H 0.087 0.913 27 H 0.237 0.763 28 H 0.080 0.920 29 H 0.085 0.915 30 H 0.107 0.893 31 H 0.045 0.955 32 H 0.090 0.910 33 H 0.063 0.937 34 H 0.063 0.937 35 H 0.054 0.946 36 H 0.098 0.902 37 H 0.098 0.902 38 H 0.086 0.914 39 H 0.087 0.913 40 H 0.087 0.913 41 H 0.086 0.914 42 H 0.100 0.900 43 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 4.615 -19.847 7.380 21.672 hybrid contribution -0.913 0.966 -0.507 1.423 sum 3.702 -18.881 6.874 20.431 Atomic orbital electron populations 1.20729 0.90797 1.03104 1.02335 1.20806 0.96045 0.92072 1.09890 1.18265 0.87191 0.84006 0.76495 1.90715 1.13606 1.87642 1.50888 1.46005 1.10646 1.05778 1.74512 1.21429 0.94724 0.81510 1.01665 1.23798 0.98248 0.93118 1.02163 1.22349 0.99950 0.83429 0.89914 1.46001 1.45158 1.04040 1.38759 1.19084 1.17358 0.84589 1.13853 0.90211 1.24786 1.00001 0.97374 0.98452 1.69829 1.35814 1.25531 1.25737 0.86046 0.78831 0.82791 0.78097 1.20473 1.21768 1.21715 1.22489 0.93200 0.90619 0.93517 1.22667 0.96614 0.93318 0.91866 1.21292 0.98258 0.91428 1.02556 1.22390 0.95053 0.97533 1.01294 1.22587 0.98230 0.95423 1.00285 1.21675 0.92335 0.97186 1.02430 0.91171 0.91272 0.91341 0.76335 0.92032 0.91461 0.89275 0.95505 0.90999 0.93746 0.93677 0.94645 0.90223 0.90181 0.91368 0.91320 0.91252 0.91423 0.90016 0.88396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.05 9.35 36.00 0.34 -0.71 16 2 C -0.19 -2.23 6.00 -102.85 -0.62 -2.85 16 3 C 0.55 8.34 7.75 -12.66 -0.10 8.25 16 4 O -0.55 -9.80 13.75 5.27 0.07 -9.73 16 5 N -0.72 -10.41 5.50 -61.49 -0.34 -10.74 16 6 C 0.13 2.10 5.51 -4.05 -0.02 2.08 16 7 C -0.15 -2.78 3.93 -89.69 -0.35 -3.14 16 8 C 0.17 3.92 7.08 -2.83 -0.02 3.90 16 9 N -0.61 -15.85 3.70 -177.65 -0.66 -16.51 16 10 C -0.22 -6.27 10.70 -15.06 -0.16 -6.43 16 11 H 0.08 2.18 7.83 -52.48 -0.41 1.77 16 12 C -0.01 -0.28 5.50 -17.43 -0.10 -0.38 16 13 N -0.92 -27.37 11.39 55.49 0.63 -26.74 16 14 Si 0.91 22.25 29.55 -169.99 -5.02 17.23 16 15 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 16 H -0.29 -7.15 7.11 56.52 0.40 -6.74 16 17 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 18 C 0.13 2.62 8.51 -2.96 -0.03 2.59 16 19 C -0.04 -0.47 6.12 -100.24 -0.61 -1.09 16 20 C -0.10 -0.79 5.53 -26.85 -0.15 -0.94 16 21 C -0.13 -0.91 6.87 -25.01 -0.17 -1.08 16 22 C -0.13 -1.08 6.95 -24.70 -0.17 -1.25 16 23 C -0.10 -1.13 5.42 -26.33 -0.14 -1.27 16 24 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 25 H 0.07 0.65 6.70 -51.93 -0.35 0.30 16 26 H 0.07 0.54 7.15 -51.93 -0.37 0.17 16 27 H 0.40 5.11 6.57 -40.82 -0.27 4.84 16 28 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 29 H 0.07 1.18 7.88 -51.92 -0.41 0.77 16 30 H 0.09 1.55 8.14 -51.93 -0.42 1.13 16 31 H 0.03 0.65 7.92 -51.93 -0.41 0.24 16 32 H 0.07 1.82 7.16 -51.93 -0.37 1.45 16 33 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 34 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 35 H 0.04 0.70 8.10 -51.93 -0.42 0.28 16 36 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.08 0.59 7.90 -51.93 -0.41 0.18 16 38 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 39 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 42 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 43 H 0.10 1.33 6.26 -51.93 -0.32 1.01 16 LS Contribution 343.63 15.07 5.18 5.18 Total: -1.00 -32.56 343.63 -9.55 -42.11 By element: Atomic # 1 Polarization: 8.63 SS G_CDS: -7.11 Total: 1.52 kcal Atomic # 6 Polarization: -0.01 SS G_CDS: -2.30 Total: -2.31 kcal Atomic # 7 Polarization: -53.62 SS G_CDS: -0.36 Total: -53.99 kcal Atomic # 8 Polarization: -9.80 SS G_CDS: 0.07 Total: -9.73 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -5.02 Total: 17.23 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -32.56 -9.55 -42.11 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714961906.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.399 kcal (2) G-P(sol) polarization free energy of solvation -32.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.107 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds