Wall clock time and date at job start Tue Mar 31 2020 00:08:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.47107 * 119.99938 * 2 1 4 4 O 1.21609 * 119.99916 * 179.97438 * 3 2 1 5 5 N 1.34775 * 119.99816 * 0.02562 * 3 2 1 6 6 C 1.46501 * 120.00012 * 179.97438 * 5 3 2 7 7 C 1.52992 * 109.47274 * 179.97438 * 6 5 3 8 8 C 1.53952 * 113.74364 * 273.74167 * 7 6 5 9 9 N 1.47813 * 86.03906 * 222.08628 * 8 7 6 10 10 C 1.36936 * 134.45481 * 204.64746 * 9 8 7 11 11 H 1.08011 * 119.99621 * 179.86118 * 10 9 8 12 12 C 1.38803 * 120.00319 * 359.86034 * 10 9 8 13 13 N 1.31624 * 119.99916 * 0.02562 * 12 10 9 14 14 Si 1.86802 * 120.00353 * 179.97438 * 12 10 9 15 15 H 1.48502 * 109.46716 * 0.02562 * 14 12 10 16 16 H 1.48501 * 109.47159 * 120.00006 * 14 12 10 17 17 H 1.48497 * 109.47309 * 240.00307 * 14 12 10 18 18 C 1.47586 * 91.05214 * 24.54835 * 9 8 7 19 19 C 1.32991 * 120.00431 * 180.02562 * 2 1 3 20 20 C 1.51446 * 126.33559 * 359.97438 * 19 2 1 21 21 C 1.54282 * 106.84905 * 180.33712 * 20 19 2 22 22 C 1.54987 * 103.74985 * 23.12444 * 21 20 19 23 23 C 1.51843 * 126.34660 * 179.97438 * 19 2 1 24 24 H 1.08996 * 109.47163 * 269.99633 * 1 2 3 25 25 H 1.09005 * 109.47072 * 30.00205 * 1 2 3 26 26 H 1.09003 * 109.46954 * 149.99479 * 1 2 3 27 27 H 0.97002 * 120.00454 * 359.97438 * 5 3 2 28 28 H 1.08998 * 109.47140 * 299.99950 * 6 5 3 29 29 H 1.09010 * 109.46877 * 59.99981 * 6 5 3 30 30 H 1.09000 * 112.94939 * 45.33496 * 7 6 5 31 31 H 1.09007 * 113.76741 * 336.34749 * 8 7 6 32 32 H 1.08992 * 113.76940 * 107.74551 * 8 7 6 33 33 H 0.97005 * 119.99812 * 179.97438 * 13 12 10 34 34 H 1.09001 * 113.76956 * 221.15587 * 18 9 8 35 35 H 1.08993 * 113.76742 * 89.75593 * 18 9 8 36 36 H 1.08996 * 109.99044 * 299.68404 * 20 19 2 37 37 H 1.09005 * 109.98620 * 60.99354 * 20 19 2 38 38 H 1.08996 * 110.57285 * 141.69135 * 21 20 19 39 39 H 1.09005 * 110.57234 * 264.55907 * 21 20 19 40 40 H 1.08999 * 110.83018 * 204.70408 * 22 21 20 41 41 H 1.09001 * 110.83046 * 81.12560 * 22 21 20 42 42 H 1.09004 * 110.43923 * 274.96947 * 23 19 2 43 43 H 1.09001 * 110.44013 * 37.36013 * 23 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2425 1.2740 0.0000 4 8 3.4586 1.2740 0.0005 5 7 1.5686 2.4411 0.0005 6 6 2.3010 3.7099 0.0011 7 6 1.3068 4.8728 0.0010 8 6 0.8346 5.2845 -1.4053 9 7 0.9863 6.6780 -0.9365 10 6 0.4313 7.8769 -1.2969 11 1 0.7173 8.7814 -0.7803 12 6 -0.4985 7.9299 -2.3260 13 7 -0.8473 6.8276 -2.9552 14 14 -1.2561 9.5652 -2.8172 15 1 -0.7011 10.6446 -1.9616 16 1 -0.9398 9.8499 -4.2399 17 1 -2.7292 9.5012 -2.6409 18 6 1.9736 6.2583 0.0771 19 6 2.1720 -1.1517 -0.0005 20 6 1.5643 -2.5388 -0.0006 21 6 2.7372 -3.5410 0.0074 22 6 3.9137 -2.7264 0.6028 23 6 3.6812 -1.3194 -0.0011 24 1 -0.3633 -0.0001 1.0276 25 1 -0.3633 0.8900 -0.5139 26 1 -0.3633 -0.8900 -0.5139 27 1 0.5986 2.4412 0.0005 28 1 2.9277 3.7673 0.8911 29 1 2.9277 3.7680 -0.8890 30 1 0.4941 4.7371 0.7145 31 1 1.5289 5.0102 -2.1997 32 1 -0.1955 5.0026 -1.6229 33 1 -1.4975 6.8646 -3.6742 34 1 1.8510 6.7525 1.0409 35 1 3.0030 6.2708 -0.2808 36 1 0.9505 -2.6768 0.8895 37 1 0.9594 -2.6806 -0.8963 38 1 2.5052 -4.3972 0.6407 39 1 2.9707 -3.8656 -1.0067 40 1 4.8710 -3.1343 0.2784 41 1 3.8527 -2.6959 1.6907 42 1 4.0689 -1.2733 -1.0189 43 1 4.1494 -0.5548 0.6186 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714961906.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:08:42 Heat of formation + Delta-G solvation = -6.572167 kcal Electronic energy + Delta-G solvation = -21320.330824 eV Core-core repulsion = 18172.834675 eV Total energy + Delta-G solvation = -3147.496149 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.07298 -39.79528 -38.66576 -35.77548 -34.52916 -33.96503 -30.59518 -29.80204 -28.51257 -27.58126 -26.56291 -25.21787 -23.72697 -21.83797 -21.59121 -20.80850 -19.19785 -18.71645 -17.38856 -17.22812 -16.99661 -16.71026 -16.12624 -15.88105 -15.55693 -15.17137 -14.65740 -14.41736 -14.21266 -14.06781 -13.71440 -13.33580 -13.29161 -13.13375 -13.11326 -12.99698 -12.88456 -12.53300 -12.25145 -12.15228 -11.92298 -11.82066 -11.74346 -11.56982 -11.45330 -11.26832 -10.89246 -10.58634 -10.11379 -9.62194 -8.92935 -7.91350 -5.24876 0.43346 1.45209 1.46384 1.56632 2.26674 2.30942 2.46901 3.29257 3.37962 3.50493 3.73850 3.79477 3.97582 4.07381 4.17606 4.19302 4.33529 4.36909 4.52374 4.58615 4.72713 4.75911 4.81491 4.84680 4.85114 4.86695 4.94072 4.98152 5.07708 5.08952 5.15147 5.21214 5.24522 5.26499 5.44262 5.47191 5.52493 5.55632 5.63874 5.73238 5.93004 6.63669 6.91552 7.29519 7.59817 8.55602 9.25706 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.039197 B = 0.002960 C = 0.002830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 714.169545 B = 9458.110708 C = 9890.174559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.204 4.204 3 C 0.544 3.456 4 O -0.583 6.583 5 N -0.715 5.715 6 C 0.143 3.857 7 C -0.115 4.115 8 C 0.167 3.833 9 N -0.645 5.645 10 C -0.235 4.235 11 H 0.084 0.916 12 C -0.069 4.069 13 N -0.953 5.953 14 Si 0.980 3.020 15 H -0.265 1.265 16 H -0.294 1.294 17 H -0.289 1.289 18 C 0.126 3.874 19 C -0.040 4.040 20 C -0.096 4.096 21 C -0.121 4.121 22 C -0.123 4.123 23 C -0.107 4.107 24 H 0.083 0.917 25 H 0.063 0.937 26 H 0.085 0.915 27 H 0.411 0.589 28 H 0.074 0.926 29 H 0.050 0.950 30 H 0.104 0.896 31 H 0.010 0.990 32 H 0.045 0.955 33 H 0.248 0.752 34 H 0.063 0.937 35 H 0.046 0.954 36 H 0.096 0.904 37 H 0.093 0.907 38 H 0.088 0.912 39 H 0.073 0.927 40 H 0.077 0.923 41 H 0.070 0.930 42 H 0.071 0.929 43 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.370 -21.419 8.745 23.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.207 4.207 3 C 0.335 3.665 4 O -0.466 6.466 5 N -0.366 5.366 6 C 0.018 3.982 7 C -0.135 4.135 8 C 0.041 3.959 9 N -0.372 5.372 10 C -0.363 4.363 11 H 0.101 0.899 12 C -0.262 4.262 13 N -0.602 5.602 14 Si 0.808 3.192 15 H -0.190 1.190 16 H -0.221 1.221 17 H -0.216 1.216 18 C 0.001 3.999 19 C -0.042 4.042 20 C -0.132 4.132 21 C -0.158 4.158 22 C -0.161 4.161 23 C -0.143 4.143 24 H 0.101 0.899 25 H 0.082 0.918 26 H 0.104 0.896 27 H 0.248 0.752 28 H 0.092 0.908 29 H 0.068 0.932 30 H 0.122 0.878 31 H 0.028 0.972 32 H 0.064 0.936 33 H 0.057 0.943 34 H 0.081 0.919 35 H 0.064 0.936 36 H 0.114 0.886 37 H 0.111 0.889 38 H 0.106 0.894 39 H 0.091 0.909 40 H 0.096 0.904 41 H 0.089 0.911 42 H 0.089 0.911 43 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 4.018 -21.152 8.588 23.180 hybrid contribution -0.617 1.345 -0.859 1.711 sum 3.401 -19.807 7.729 21.532 Atomic orbital electron populations 1.20751 0.88619 1.03722 1.03378 1.20857 0.97445 0.90690 1.11666 1.18852 0.87010 0.85027 0.75597 1.90702 1.15186 1.88195 1.52533 1.45928 1.11093 1.05194 1.74396 1.21156 0.94010 0.81568 1.01429 1.23404 0.98356 0.93015 0.98696 1.22253 0.98161 0.83139 0.92325 1.46422 1.46594 1.04095 1.40085 1.19482 1.17264 0.85858 1.13732 0.89853 1.25648 1.00928 1.00800 0.98843 1.70013 1.36501 1.27495 1.26211 0.84990 0.77703 0.79123 0.77381 1.18978 1.22133 1.21606 1.22691 0.92748 0.91480 0.92975 1.23038 0.96547 0.94728 0.89853 1.21376 0.98739 0.89226 1.03878 1.22410 0.93824 0.97668 1.01926 1.22572 0.99500 0.93624 1.00368 1.21677 0.92783 0.98410 1.01468 0.89852 0.91766 0.89608 0.75228 0.90814 0.93179 0.87795 0.97249 0.93631 0.94273 0.91851 0.93642 0.88567 0.88875 0.89351 0.90860 0.90418 0.91113 0.91089 0.91244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.79 9.35 71.24 0.67 -1.13 16 2 C -0.20 -4.73 6.00 -18.70 -0.11 -4.84 16 3 C 0.54 16.50 7.75 86.57 0.67 17.17 16 4 O -0.58 -21.41 13.75 -4.06 -0.06 -21.46 16 5 N -0.71 -20.43 5.50 -466.71 -2.57 -22.99 16 6 C 0.14 4.53 5.51 86.38 0.48 5.01 16 7 C -0.12 -4.09 3.93 -10.13 -0.04 -4.13 16 8 C 0.17 7.90 7.08 86.44 0.61 8.51 16 9 N -0.65 -33.50 3.70 -715.97 -2.65 -36.16 16 10 C -0.24 -13.36 10.70 84.03 0.90 -12.47 16 11 H 0.08 4.53 7.83 -2.90 -0.02 4.51 16 12 C -0.07 -3.99 5.50 84.86 0.47 -3.53 16 13 N -0.95 -57.83 11.39 21.65 0.25 -57.58 16 14 Si 0.98 46.07 29.55 68.60 2.03 48.09 16 15 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 16 H -0.29 -13.89 7.11 99.48 0.71 -13.18 16 17 H -0.29 -13.44 7.11 99.48 0.71 -12.74 16 18 C 0.13 5.02 8.51 86.49 0.74 5.76 16 19 C -0.04 -0.83 6.12 -17.01 -0.10 -0.94 16 20 C -0.10 -1.26 5.53 30.52 0.17 -1.09 16 21 C -0.12 -1.40 6.87 31.71 0.22 -1.18 16 22 C -0.12 -1.89 6.95 31.91 0.22 -1.67 16 23 C -0.11 -2.41 5.42 30.85 0.17 -2.25 16 24 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 25 H 0.06 1.12 6.70 -2.38 -0.02 1.10 16 26 H 0.09 1.12 7.15 -2.39 -0.02 1.10 16 27 H 0.41 10.15 6.57 -92.71 -0.61 9.54 16 28 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 29 H 0.05 1.78 7.88 -2.38 -0.02 1.76 16 30 H 0.10 3.44 8.14 -2.39 -0.02 3.42 16 31 H 0.01 0.49 7.92 -2.38 -0.02 0.47 16 32 H 0.05 2.38 7.16 -2.39 -0.02 2.37 16 33 H 0.25 14.58 8.31 -92.70 -0.77 13.81 16 34 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 35 H 0.05 1.75 8.10 -2.39 -0.02 1.73 16 36 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16 37 H 0.09 1.05 7.90 -2.38 -0.02 1.03 16 38 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 39 H 0.07 0.80 8.14 -2.38 -0.02 0.78 16 40 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 41 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 42 H 0.07 1.72 8.14 -2.38 -0.02 1.70 16 43 H 0.07 1.98 6.26 -2.39 -0.01 1.96 16 Total: -1.00 -71.56 343.63 2.43 -69.13 By element: Atomic # 1 Polarization: 17.34 SS G_CDS: 0.38 Total: 17.72 kcal Atomic # 6 Polarization: -1.81 SS G_CDS: 5.05 Total: 3.24 kcal Atomic # 7 Polarization: -111.76 SS G_CDS: -4.97 Total: -116.73 kcal Atomic # 8 Polarization: -21.41 SS G_CDS: -0.06 Total: -21.46 kcal Atomic # 14 Polarization: 46.07 SS G_CDS: 2.03 Total: 48.09 kcal Total: -71.56 2.43 -69.13 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714961906.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.562 kcal (2) G-P(sol) polarization free energy of solvation -71.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.134 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds