Wall clock time and date at job start Tue Mar 31 2020 00:08:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.47099 * 119.99692 * 2 1 4 4 O 1.21616 * 120.00183 * 179.97438 * 3 2 1 5 5 N 1.34780 * 120.00164 * 359.97438 * 3 2 1 6 6 C 1.46504 * 119.99881 * 180.02562 * 5 3 2 7 7 C 1.53004 * 109.46788 * 180.02562 * 6 5 3 8 8 H 1.08999 * 112.96161 * 53.32223 * 7 6 5 9 9 C 1.53940 * 113.76777 * 185.00232 * 7 6 5 10 10 C 1.53950 * 86.29166 * 137.91192 * 9 7 6 11 11 N 1.47578 * 113.77057 * 281.49972 * 7 6 5 12 12 C 1.36931 * 134.49445 * 41.05321 * 11 7 6 13 13 H 1.08004 * 120.00375 * 353.49485 * 12 11 7 14 14 C 1.38817 * 120.00234 * 173.49053 * 12 11 7 15 15 N 1.31622 * 119.99690 * 5.07171 * 14 12 11 16 16 Si 1.86797 * 120.00341 * 185.07372 * 14 12 11 17 17 H 1.48497 * 109.47150 * 94.98591 * 16 14 12 18 18 H 1.48501 * 109.47271 * 214.98753 * 16 14 12 19 19 H 1.48500 * 109.46929 * 334.98528 * 16 14 12 20 20 C 1.32987 * 120.00211 * 179.97438 * 2 1 3 21 21 C 1.51455 * 126.34295 * 179.68841 * 20 2 1 22 22 C 1.54270 * 106.85035 * 180.24412 * 21 20 2 23 23 C 1.54982 * 103.66628 * 23.48398 * 22 21 20 24 24 C 1.51849 * 126.34376 * 0.02562 * 20 2 1 25 25 H 1.09003 * 109.47331 * 90.00464 * 1 2 3 26 26 H 1.09002 * 109.46875 * 210.00254 * 1 2 3 27 27 H 1.08999 * 109.47539 * 330.00196 * 1 2 3 28 28 H 0.96994 * 120.00015 * 0.02562 * 5 3 2 29 29 H 1.08994 * 109.47378 * 300.00403 * 6 5 3 30 30 H 1.08998 * 109.46657 * 60.00632 * 6 5 3 31 31 H 1.09010 * 113.74157 * 252.25533 * 9 7 6 32 32 H 1.08997 * 113.74425 * 23.45828 * 9 7 6 33 33 H 1.08996 * 113.76715 * 90.69370 * 10 9 7 34 34 H 1.08996 * 113.76688 * 221.98288 * 10 9 7 35 35 H 0.96995 * 120.00376 * 180.02562 * 15 14 12 36 36 H 1.08994 * 109.98213 * 299.73415 * 21 20 2 37 37 H 1.09001 * 109.98324 * 61.03289 * 21 20 2 38 38 H 1.08999 * 110.79772 * 264.85760 * 22 21 20 39 39 H 1.09007 * 110.42808 * 141.93386 * 22 21 20 40 40 H 1.08990 * 110.83461 * 204.48616 * 23 22 21 41 41 H 1.09006 * 111.00118 * 80.98490 * 23 22 21 42 42 H 1.08992 * 110.44341 * 274.92514 * 24 20 2 43 43 H 1.08997 * 110.43915 * 37.44921 * 24 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2424 1.2740 0.0000 4 8 3.4586 1.2741 0.0005 5 7 1.5685 2.4412 -0.0005 6 6 2.3010 3.7099 -0.0011 7 6 1.3066 4.8728 -0.0010 8 1 0.5750 4.8066 0.8043 9 6 1.9701 6.2564 -0.1244 10 6 0.8326 6.6039 -1.1018 11 7 0.7149 5.1497 -1.3243 12 6 0.2454 4.3703 -2.3476 13 1 0.3661 3.2977 -2.3088 14 6 -0.3859 4.9587 -3.4349 15 7 -0.4450 6.2701 -3.5310 16 14 -1.1516 3.8896 -4.7615 17 1 -2.5965 3.7029 -4.4741 18 1 -0.9907 4.5486 -6.0825 19 1 -0.4762 2.5672 -4.7825 20 6 2.1720 -1.1517 0.0005 21 6 3.6772 -1.3190 -0.0060 22 6 3.9586 -2.8358 -0.0089 23 6 2.6648 -3.4471 -0.6041 24 6 1.5627 -2.5426 0.0006 25 1 -0.3634 -0.0001 -1.0277 26 1 -0.3633 -0.8900 0.5139 27 1 -0.3634 0.8900 0.5138 28 1 0.5985 2.4411 -0.0005 29 1 2.9277 3.7681 0.8888 30 1 2.9275 3.7672 -0.8912 31 1 1.9489 6.8371 0.7979 32 1 2.9564 6.2305 -0.5876 33 1 -0.0397 7.0468 -0.6211 34 1 1.1622 7.1592 -1.9799 35 1 -0.8864 6.6814 -4.2905 36 1 4.0993 -0.8580 -0.8990 37 1 4.1065 -0.8642 0.8867 38 1 4.1233 -3.2007 1.0049 39 1 4.8160 -3.0625 -0.6426 40 1 2.5396 -4.4802 -0.2803 41 1 2.6663 -3.3811 -1.6922 42 1 1.3293 -2.8559 1.0181 43 1 0.6675 -2.5661 -0.6208 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716647729.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:08:51 Heat of formation + Delta-G solvation = 12.461605 kcal Electronic energy + Delta-G solvation = -21977.120942 eV Core-core repulsion = 18830.450160 eV Total energy + Delta-G solvation = -3146.670782 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.72828 -38.22281 -37.49254 -34.11530 -33.27087 -32.15338 -28.97113 -28.24550 -27.82540 -27.15025 -24.26325 -23.35295 -22.18801 -20.76672 -20.44416 -19.23111 -18.17656 -16.69512 -16.21165 -15.85014 -15.67967 -15.20823 -14.55338 -14.50473 -13.91278 -13.66986 -13.44516 -13.27905 -13.01914 -12.66944 -12.51179 -12.33726 -11.90957 -11.79869 -11.44096 -11.25353 -11.16697 -11.06444 -11.01179 -10.98845 -10.74810 -10.71655 -10.51632 -9.99295 -9.74432 -9.54818 -9.20039 -8.81425 -8.77382 -8.38770 -6.87230 -5.77306 -3.08526 1.54503 3.37664 3.43325 3.45356 3.56200 3.68851 4.40174 4.45708 4.58139 4.89017 4.99714 5.09356 5.17996 5.22045 5.33409 5.40674 5.47713 5.62474 5.64133 5.67521 5.68925 5.72466 5.76915 5.86556 5.94034 5.97368 5.98070 6.12148 6.17179 6.25241 6.33288 6.41749 6.52202 6.63689 6.69754 6.75606 6.97823 7.26873 7.41183 7.60540 7.98590 8.01699 8.66797 9.05202 9.71621 10.61090 11.40144 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.017997 B = 0.004750 C = 0.004031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1555.478482 B = 5893.488918 C = 6944.440884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.180 4.180 3 C 0.550 3.450 4 O -0.553 6.553 5 N -0.711 5.711 6 C 0.124 3.876 7 C 0.125 3.875 8 H 0.049 0.951 9 C -0.156 4.156 10 C 0.162 3.838 11 N -0.602 5.602 12 C -0.219 4.219 13 H 0.079 0.921 14 C -0.006 4.006 15 N -0.918 5.918 16 Si 0.904 3.096 17 H -0.289 1.289 18 H -0.291 1.291 19 H -0.281 1.281 20 C -0.048 4.048 21 C -0.088 4.088 22 C -0.129 4.129 23 C -0.124 4.124 24 C -0.098 4.098 25 H 0.073 0.927 26 H 0.066 0.934 27 H 0.066 0.934 28 H 0.402 0.598 29 H 0.059 0.941 30 H 0.071 0.929 31 H 0.053 0.947 32 H 0.076 0.924 33 H 0.028 0.972 34 H 0.069 0.931 35 H 0.253 0.747 36 H 0.085 0.915 37 H 0.082 0.918 38 H 0.065 0.935 39 H 0.067 0.933 40 H 0.068 0.932 41 H 0.070 0.930 42 H 0.083 0.917 43 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.649 -14.180 9.455 17.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.183 4.183 3 C 0.338 3.662 4 O -0.433 6.433 5 N -0.361 5.361 6 C -0.001 4.001 7 C 0.017 3.983 8 H 0.066 0.934 9 C -0.195 4.195 10 C 0.037 3.963 11 N -0.328 5.328 12 C -0.347 4.347 13 H 0.097 0.903 14 C -0.203 4.203 15 N -0.565 5.565 16 Si 0.734 3.266 17 H -0.217 1.217 18 H -0.217 1.217 19 H -0.206 1.206 20 C -0.050 4.050 21 C -0.125 4.125 22 C -0.166 4.166 23 C -0.161 4.161 24 C -0.134 4.134 25 H 0.091 0.909 26 H 0.085 0.915 27 H 0.084 0.916 28 H 0.238 0.762 29 H 0.077 0.923 30 H 0.089 0.911 31 H 0.072 0.928 32 H 0.095 0.905 33 H 0.046 0.954 34 H 0.087 0.913 35 H 0.063 0.937 36 H 0.103 0.897 37 H 0.100 0.900 38 H 0.084 0.916 39 H 0.086 0.914 40 H 0.087 0.913 41 H 0.088 0.912 42 H 0.101 0.899 43 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 4.355 -14.192 9.126 17.426 hybrid contribution -1.161 -0.434 -0.811 1.481 sum 3.194 -14.626 8.316 17.125 Atomic orbital electron populations 1.20723 0.90854 1.02566 1.02733 1.20854 0.96060 0.92170 1.09189 1.18241 0.87181 0.84043 0.76706 1.90724 1.13573 1.87846 1.51207 1.45911 1.10729 1.05638 1.73821 1.21727 0.95045 0.82023 1.01262 1.22504 0.93031 0.92552 0.90168 0.93391 1.23786 1.00180 0.95983 0.99587 1.22131 0.92081 0.87014 0.95111 1.46056 1.72971 1.02313 1.11494 1.18968 1.30055 0.89829 0.95799 0.90289 1.24790 1.00954 0.95762 0.98791 1.69836 1.47767 1.07824 1.31067 0.86217 0.79368 0.79504 0.81470 1.21665 1.21733 1.20603 1.22618 0.96354 0.93388 0.92653 1.21223 0.92332 0.95077 1.03838 1.22468 0.97666 0.95637 1.00861 1.22509 0.94659 0.98435 1.00527 1.21531 0.98570 0.91749 1.01594 0.90864 0.91491 0.91556 0.76218 0.92287 0.91107 0.92827 0.90536 0.95430 0.91270 0.93713 0.89718 0.89959 0.91580 0.91434 0.91282 0.91167 0.89857 0.90551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.35 9.16 36.00 0.33 -1.02 16 2 C -0.18 -2.62 6.00 -102.85 -0.62 -3.24 16 3 C 0.55 9.81 7.75 -12.66 -0.10 9.71 16 4 O -0.55 -11.19 14.11 5.26 0.07 -11.11 16 5 N -0.71 -12.59 5.46 -61.49 -0.34 -12.93 16 6 C 0.12 2.31 5.54 -4.04 -0.02 2.29 16 7 C 0.12 2.44 4.33 -66.87 -0.29 2.15 16 8 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 9 C -0.16 -2.88 7.86 -25.81 -0.20 -3.09 16 10 C 0.16 3.74 7.42 -2.97 -0.02 3.71 16 11 N -0.60 -14.78 3.57 -170.75 -0.61 -15.39 16 12 C -0.22 -5.92 10.50 -15.06 -0.16 -6.08 16 13 H 0.08 2.08 7.79 -52.48 -0.41 1.67 16 14 C -0.01 -0.18 5.50 -17.43 -0.10 -0.27 16 15 N -0.92 -27.02 11.51 55.49 0.64 -26.38 16 16 Si 0.90 22.05 29.56 -169.99 -5.02 17.03 16 17 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 18 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 19 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 20 C -0.05 -0.63 6.12 -100.23 -0.61 -1.25 16 21 C -0.09 -1.15 4.81 -26.85 -0.13 -1.28 16 22 C -0.13 -1.26 6.87 -25.02 -0.17 -1.43 16 23 C -0.12 -1.10 6.94 -24.70 -0.17 -1.27 16 24 C -0.10 -0.95 5.66 -26.33 -0.15 -1.10 16 25 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 26 H 0.07 0.66 7.22 -51.93 -0.37 0.28 16 27 H 0.07 0.78 6.70 -51.93 -0.35 0.43 16 28 H 0.40 6.79 6.57 -40.82 -0.27 6.52 16 29 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 30 H 0.07 1.51 8.14 -51.93 -0.42 1.09 16 31 H 0.05 0.84 8.14 -51.92 -0.42 0.41 16 32 H 0.08 1.39 8.10 -51.93 -0.42 0.97 16 33 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 34 H 0.07 1.77 7.36 -51.93 -0.38 1.39 16 35 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 36 H 0.08 1.27 7.67 -51.93 -0.40 0.87 16 37 H 0.08 1.16 7.68 -51.93 -0.40 0.77 16 38 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 39 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 41 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 42 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 43 H 0.08 0.70 7.69 -51.93 -0.40 0.30 16 LS Contribution 344.65 15.07 5.19 5.19 Total: -1.00 -31.48 344.65 -9.66 -41.14 By element: Atomic # 1 Polarization: 11.78 SS G_CDS: -7.18 Total: 4.60 kcal Atomic # 6 Polarization: 0.26 SS G_CDS: -2.41 Total: -2.15 kcal Atomic # 7 Polarization: -54.39 SS G_CDS: -0.31 Total: -54.70 kcal Atomic # 8 Polarization: -11.19 SS G_CDS: 0.07 Total: -11.11 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -31.48 -9.66 -41.14 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716647729.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.604 kcal (2) G-P(sol) polarization free energy of solvation -31.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.143 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds