Wall clock time and date at job start Tue Mar 31 2020 00:08:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.47099 * 119.99692 * 2 1 4 4 O 1.21616 * 120.00183 * 179.97438 * 3 2 1 5 5 N 1.34780 * 120.00164 * 359.97438 * 3 2 1 6 6 C 1.46504 * 119.99881 * 180.02562 * 5 3 2 7 7 C 1.53004 * 109.46788 * 180.02562 * 6 5 3 8 8 H 1.08999 * 112.96161 * 53.32223 * 7 6 5 9 9 C 1.53940 * 113.76777 * 185.00232 * 7 6 5 10 10 C 1.53950 * 86.29166 * 137.91192 * 9 7 6 11 11 N 1.47578 * 113.77057 * 281.49972 * 7 6 5 12 12 C 1.36931 * 134.49445 * 41.05321 * 11 7 6 13 13 H 1.08004 * 120.00375 * 353.49485 * 12 11 7 14 14 C 1.38817 * 120.00234 * 173.49053 * 12 11 7 15 15 N 1.31622 * 119.99690 * 5.07171 * 14 12 11 16 16 Si 1.86797 * 120.00341 * 185.07372 * 14 12 11 17 17 H 1.48497 * 109.47150 * 94.98591 * 16 14 12 18 18 H 1.48501 * 109.47271 * 214.98753 * 16 14 12 19 19 H 1.48500 * 109.46929 * 334.98528 * 16 14 12 20 20 C 1.32987 * 120.00211 * 179.97438 * 2 1 3 21 21 C 1.51455 * 126.34295 * 179.68841 * 20 2 1 22 22 C 1.54270 * 106.85035 * 180.24412 * 21 20 2 23 23 C 1.54982 * 103.66628 * 23.48398 * 22 21 20 24 24 C 1.51849 * 126.34376 * 0.02562 * 20 2 1 25 25 H 1.09003 * 109.47331 * 90.00464 * 1 2 3 26 26 H 1.09002 * 109.46875 * 210.00254 * 1 2 3 27 27 H 1.08999 * 109.47539 * 330.00196 * 1 2 3 28 28 H 0.96994 * 120.00015 * 0.02562 * 5 3 2 29 29 H 1.08994 * 109.47378 * 300.00403 * 6 5 3 30 30 H 1.08998 * 109.46657 * 60.00632 * 6 5 3 31 31 H 1.09010 * 113.74157 * 252.25533 * 9 7 6 32 32 H 1.08997 * 113.74425 * 23.45828 * 9 7 6 33 33 H 1.08996 * 113.76715 * 90.69370 * 10 9 7 34 34 H 1.08996 * 113.76688 * 221.98288 * 10 9 7 35 35 H 0.96995 * 120.00376 * 180.02562 * 15 14 12 36 36 H 1.08994 * 109.98213 * 299.73415 * 21 20 2 37 37 H 1.09001 * 109.98324 * 61.03289 * 21 20 2 38 38 H 1.08999 * 110.79772 * 264.85760 * 22 21 20 39 39 H 1.09007 * 110.42808 * 141.93386 * 22 21 20 40 40 H 1.08990 * 110.83461 * 204.48616 * 23 22 21 41 41 H 1.09006 * 111.00118 * 80.98490 * 23 22 21 42 42 H 1.08992 * 110.44341 * 274.92514 * 24 20 2 43 43 H 1.08997 * 110.43915 * 37.44921 * 24 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2424 1.2740 0.0000 4 8 3.4586 1.2741 0.0005 5 7 1.5685 2.4412 -0.0005 6 6 2.3010 3.7099 -0.0011 7 6 1.3066 4.8728 -0.0010 8 1 0.5750 4.8066 0.8043 9 6 1.9701 6.2564 -0.1244 10 6 0.8326 6.6039 -1.1018 11 7 0.7149 5.1497 -1.3243 12 6 0.2454 4.3703 -2.3476 13 1 0.3661 3.2977 -2.3088 14 6 -0.3859 4.9587 -3.4349 15 7 -0.4450 6.2701 -3.5310 16 14 -1.1516 3.8896 -4.7615 17 1 -2.5965 3.7029 -4.4741 18 1 -0.9907 4.5486 -6.0825 19 1 -0.4762 2.5672 -4.7825 20 6 2.1720 -1.1517 0.0005 21 6 3.6772 -1.3190 -0.0060 22 6 3.9586 -2.8358 -0.0089 23 6 2.6648 -3.4471 -0.6041 24 6 1.5627 -2.5426 0.0006 25 1 -0.3634 -0.0001 -1.0277 26 1 -0.3633 -0.8900 0.5139 27 1 -0.3634 0.8900 0.5138 28 1 0.5985 2.4411 -0.0005 29 1 2.9277 3.7681 0.8888 30 1 2.9275 3.7672 -0.8912 31 1 1.9489 6.8371 0.7979 32 1 2.9564 6.2305 -0.5876 33 1 -0.0397 7.0468 -0.6211 34 1 1.1622 7.1592 -1.9799 35 1 -0.8864 6.6814 -4.2905 36 1 4.0993 -0.8580 -0.8990 37 1 4.1065 -0.8642 0.8867 38 1 4.1233 -3.2007 1.0049 39 1 4.8160 -3.0625 -0.6426 40 1 2.5396 -4.4802 -0.2803 41 1 2.6663 -3.3811 -1.6922 42 1 1.3293 -2.8559 1.0181 43 1 0.6675 -2.5661 -0.6208 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716647729.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:08:51 Heat of formation + Delta-G solvation = -6.510549 kcal Electronic energy + Delta-G solvation = -21977.943636 eV Core-core repulsion = 18830.450160 eV Total energy + Delta-G solvation = -3147.493477 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.05113 -39.74406 -38.68074 -35.58476 -34.43450 -34.08384 -29.94648 -29.84877 -29.43563 -28.23065 -25.41268 -25.29397 -23.70790 -21.76662 -21.58153 -20.92556 -19.52983 -18.42045 -17.38238 -17.16960 -17.13092 -16.65170 -16.04782 -15.87633 -15.53946 -15.17998 -14.80104 -14.44137 -14.24480 -13.96238 -13.55850 -13.37228 -13.32319 -13.21704 -12.93519 -12.82711 -12.65692 -12.58464 -12.30467 -12.20064 -11.95096 -11.87681 -11.83854 -11.53017 -11.48467 -11.31923 -10.83484 -10.63001 -10.10822 -9.63881 -8.87270 -7.88381 -5.19012 0.40990 1.43291 1.44134 1.52431 2.21755 2.36049 2.48217 3.29820 3.38741 3.49641 3.74523 3.92003 4.00818 4.11504 4.14408 4.18860 4.32702 4.33929 4.49851 4.61873 4.68166 4.70027 4.76513 4.81989 4.86423 4.89955 4.94583 5.04908 5.05862 5.09350 5.12948 5.18999 5.20734 5.34063 5.39786 5.48967 5.51454 5.60810 5.68625 5.73688 5.97485 6.63187 6.95776 7.28093 7.65093 8.60769 9.29265 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.017997 B = 0.004750 C = 0.004031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1555.478482 B = 5893.488918 C = 6944.440884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.205 4.205 3 C 0.541 3.459 4 O -0.586 6.586 5 N -0.711 5.711 6 C 0.134 3.866 7 C 0.132 3.868 8 H 0.070 0.930 9 C -0.131 4.131 10 C 0.154 3.846 11 N -0.629 5.629 12 C -0.214 4.214 13 H 0.082 0.918 14 C -0.068 4.068 15 N -0.953 5.953 16 Si 0.965 3.035 17 H -0.284 1.284 18 H -0.299 1.299 19 H -0.272 1.272 20 C -0.040 4.040 21 C -0.093 4.093 22 C -0.123 4.123 23 C -0.120 4.120 24 C -0.094 4.094 25 H 0.067 0.933 26 H 0.093 0.907 27 H 0.065 0.935 28 H 0.407 0.593 29 H 0.078 0.922 30 H 0.039 0.961 31 H 0.095 0.905 32 H 0.077 0.923 33 H 0.024 0.976 34 H 0.035 0.965 35 H 0.246 0.754 36 H 0.057 0.943 37 H 0.065 0.935 38 H 0.081 0.919 39 H 0.072 0.928 40 H 0.095 0.905 41 H 0.065 0.935 42 H 0.105 0.895 43 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.170 -16.742 10.945 20.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.208 4.208 3 C 0.332 3.668 4 O -0.469 6.469 5 N -0.361 5.361 6 C 0.009 3.991 7 C 0.025 3.975 8 H 0.088 0.912 9 C -0.169 4.169 10 C 0.029 3.971 11 N -0.356 5.356 12 C -0.342 4.342 13 H 0.099 0.901 14 C -0.261 4.261 15 N -0.602 5.602 16 Si 0.794 3.206 17 H -0.211 1.211 18 H -0.226 1.226 19 H -0.197 1.197 20 C -0.042 4.042 21 C -0.130 4.130 22 C -0.160 4.160 23 C -0.157 4.157 24 C -0.131 4.131 25 H 0.086 0.914 26 H 0.112 0.888 27 H 0.084 0.916 28 H 0.243 0.757 29 H 0.096 0.904 30 H 0.057 0.943 31 H 0.113 0.887 32 H 0.096 0.904 33 H 0.041 0.959 34 H 0.053 0.947 35 H 0.055 0.945 36 H 0.075 0.925 37 H 0.084 0.916 38 H 0.100 0.900 39 H 0.091 0.909 40 H 0.114 0.886 41 H 0.084 0.916 42 H 0.123 0.877 43 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 3.873 -16.775 10.651 20.244 hybrid contribution -0.896 0.343 -1.205 1.541 sum 2.977 -16.432 9.445 19.185 Atomic orbital electron populations 1.20720 0.88893 1.03891 1.02759 1.20892 0.97362 0.90893 1.11655 1.18871 0.87058 0.85103 0.75772 1.90702 1.15051 1.88384 1.52786 1.45905 1.10898 1.05442 1.73867 1.21511 0.94629 0.82415 1.00592 1.22667 0.93063 0.93485 0.88239 0.91244 1.23579 0.98283 0.95230 0.99851 1.22100 0.93770 0.86155 0.95107 1.46394 1.72959 1.03085 1.13121 1.19268 1.28338 0.90259 0.96370 0.90073 1.25531 1.02492 0.96863 1.01237 1.70011 1.49333 1.09262 1.31602 0.85252 0.78662 0.78139 0.78547 1.21117 1.22633 1.19718 1.23061 0.96487 0.94846 0.89818 1.21248 0.92571 0.97533 1.01691 1.22455 0.98628 0.92820 1.02118 1.22535 0.93387 0.99610 1.00212 1.21648 0.99014 0.89231 1.03192 0.91406 0.88786 0.91647 0.75700 0.90401 0.94303 0.88706 0.90405 0.95860 0.94690 0.94535 0.92491 0.91619 0.90042 0.90908 0.88603 0.91649 0.87658 0.89394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.34 9.16 71.24 0.65 -1.69 16 2 C -0.21 -5.79 6.00 -18.71 -0.11 -5.90 16 3 C 0.54 19.37 7.75 86.57 0.67 20.04 16 4 O -0.59 -24.28 14.11 -4.08 -0.06 -24.34 16 5 N -0.71 -24.90 5.46 -466.70 -2.55 -27.45 16 6 C 0.13 4.90 5.54 86.38 0.48 5.38 16 7 C 0.13 4.96 4.33 45.09 0.20 5.15 16 8 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 9 C -0.13 -4.61 7.86 31.25 0.25 -4.36 16 10 C 0.15 7.16 7.42 86.48 0.64 7.80 16 11 N -0.63 -30.96 3.57 -694.14 -2.48 -33.44 16 12 C -0.21 -11.65 10.50 84.04 0.88 -10.77 16 13 H 0.08 4.28 7.79 -2.91 -0.02 4.26 16 14 C -0.07 -3.89 5.50 84.86 0.47 -3.43 16 15 N -0.95 -57.65 11.51 21.65 0.25 -57.40 16 16 Si 0.96 46.03 29.56 68.60 2.03 48.06 16 17 H -0.28 -13.19 7.11 99.48 0.71 -12.49 16 18 H -0.30 -14.56 7.11 99.48 0.71 -13.85 16 19 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 20 C -0.04 -0.99 6.12 -17.01 -0.10 -1.10 16 21 C -0.09 -2.41 4.81 30.52 0.15 -2.27 16 22 C -0.12 -2.13 6.87 31.70 0.22 -1.91 16 23 C -0.12 -1.73 6.94 31.91 0.22 -1.51 16 24 C -0.09 -1.51 5.66 30.85 0.17 -1.34 16 25 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 26 H 0.09 1.53 7.22 -2.39 -0.02 1.52 16 27 H 0.06 1.43 6.70 -2.39 -0.02 1.41 16 28 H 0.41 13.41 6.57 -92.71 -0.61 12.80 16 29 H 0.08 2.57 8.14 -2.39 -0.02 2.55 16 30 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 31 H 0.09 2.62 8.14 -2.38 -0.02 2.60 16 32 H 0.08 2.74 8.10 -2.39 -0.02 2.72 16 33 H 0.02 1.10 8.14 -2.39 -0.02 1.08 16 34 H 0.03 1.85 7.36 -2.39 -0.02 1.83 16 35 H 0.25 14.56 8.31 -92.71 -0.77 13.79 16 36 H 0.06 1.78 7.67 -2.39 -0.02 1.76 16 37 H 0.07 1.89 7.68 -2.39 -0.02 1.87 16 38 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 39 H 0.07 1.19 8.14 -2.38 -0.02 1.17 16 40 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 41 H 0.06 1.02 8.14 -2.38 -0.02 1.00 16 42 H 0.11 1.32 8.14 -2.39 -0.02 1.30 16 43 H 0.09 1.27 7.69 -2.39 -0.02 1.25 16 Total: -1.00 -70.29 344.65 2.35 -67.95 By element: Atomic # 1 Polarization: 22.14 SS G_CDS: 0.38 Total: 22.51 kcal Atomic # 6 Polarization: -0.67 SS G_CDS: 4.78 Total: 4.11 kcal Atomic # 7 Polarization: -113.51 SS G_CDS: -4.78 Total: -118.29 kcal Atomic # 8 Polarization: -24.28 SS G_CDS: -0.06 Total: -24.34 kcal Atomic # 14 Polarization: 46.03 SS G_CDS: 2.03 Total: 48.06 kcal Total: -70.29 2.35 -67.95 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716647729.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.435 kcal (2) G-P(sol) polarization free energy of solvation -70.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.945 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds