Wall clock time and date at job start Tue Mar 31 2020 00:43:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.46817 * 2 1 4 4 C 1.47206 * 109.47021 * 119.99807 * 2 1 3 5 5 C 2.64598 * 109.47129 * 119.99672 * 2 1 3 6 6 C 4.07804 * 109.47170 * 119.99750 * 2 1 3 7 7 O 1.21610 * 119.99953 * 92.91375 * 6 5 4 8 8 N 1.34781 * 119.99554 * 272.63642 * 6 5 4 9 9 C 1.47422 * 125.65222 * 359.69675 * 8 6 5 10 10 C 1.55133 * 104.72079 * 155.81210 * 9 8 6 11 11 C 1.55155 * 101.48455 * 37.29918 * 10 9 8 12 12 C 1.52996 * 110.87640 * 82.76365 * 11 10 9 13 13 C 1.53002 * 110.71824 * 205.96708 * 11 10 9 14 14 N 1.46494 * 109.47290 * 174.97581 * 13 11 10 15 15 C 1.36936 * 120.00018 * 180.02562 * 14 13 11 16 16 H 1.07995 * 120.00030 * 359.97438 * 15 14 13 17 17 C 1.38812 * 119.99780 * 179.97438 * 15 14 13 18 18 N 1.31615 * 120.00220 * 359.97438 * 17 15 14 19 19 Si 1.86805 * 119.99917 * 180.02562 * 17 15 14 20 20 H 1.48496 * 109.47405 * 89.99731 * 19 17 15 21 21 H 1.48500 * 109.47244 * 210.00006 * 19 17 15 22 22 H 1.48502 * 109.47005 * 329.99799 * 19 17 15 23 23 C 1.47026 * 125.64340 * 179.97438 * 8 6 5 24 24 H 1.09004 * 109.46733 * 180.02562 * 1 2 3 25 25 H 1.08996 * 109.47407 * 299.99780 * 1 2 3 26 26 H 1.08992 * 109.47063 * 60.00177 * 1 2 3 27 27 H 1.08992 * 109.46974 * 240.00055 * 2 1 3 28 28 H 1.09001 * 109.47289 * 179.97438 * 3 2 1 29 29 H 1.09002 * 109.47153 * 299.99769 * 3 2 1 30 30 H 1.09004 * 109.47261 * 59.99941 * 3 2 1 31 31 H 1.08994 * 110.36675 * 274.74247 * 9 8 6 32 32 H 1.09002 * 110.36636 * 37.06410 * 9 8 6 33 33 H 1.08997 * 111.19153 * 279.18831 * 10 9 8 34 34 H 1.08998 * 110.90194 * 155.27554 * 10 9 8 35 35 H 1.09008 * 109.47036 * 304.93476 * 12 11 10 36 36 H 1.08999 * 109.47013 * 64.93486 * 12 11 10 37 37 H 1.08994 * 109.47015 * 184.93586 * 12 11 10 38 38 H 1.09005 * 109.46739 * 294.97653 * 13 11 10 39 39 H 1.09007 * 109.47237 * 54.97254 * 13 11 10 40 40 H 0.97004 * 119.99897 * 359.97438 * 14 13 11 41 41 H 0.97002 * 120.00259 * 179.97438 * 18 17 15 42 42 H 1.09004 * 109.88531 * 300.44694 * 23 8 6 43 43 H 1.08999 * 109.87911 * 61.61259 * 23 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0207 -0.6939 1.2020 5 6 2.4120 -1.2472 2.1605 6 6 2.8894 -1.9223 3.3298 7 8 3.6317 -2.8792 3.2190 8 7 2.5205 -1.4935 4.5532 9 6 1.6399 -0.3444 4.8316 10 6 1.0400 -0.6377 6.2318 11 6 2.2488 -1.2869 6.9561 12 6 3.1920 -0.2168 7.5091 13 6 1.7740 -2.2173 8.0741 14 7 2.9272 -2.9057 8.6592 15 6 2.7457 -3.7957 9.6840 16 1 1.7525 -3.9898 10.0611 17 6 3.8383 -4.4484 10.2380 18 7 5.0487 -4.2122 9.7781 19 14 3.5907 -5.6630 11.6355 20 1 3.3760 -7.0224 11.0777 21 1 4.7945 -5.6693 12.5051 22 1 2.4048 -5.2629 12.4348 23 6 2.9342 -2.0910 5.8312 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 1.8933 -0.5138 -0.8899 28 1 3.1299 1.4426 0.0005 29 1 1.6766 1.9563 -0.8900 30 1 1.6766 1.9564 0.8900 31 1 2.2170 0.5800 4.8496 32 1 0.8479 -0.2838 4.0851 33 1 0.2045 -1.3345 6.1644 34 1 0.7379 0.2854 6.7266 35 1 3.4945 0.4524 6.7035 36 1 2.6793 0.3546 8.2829 37 1 4.0742 -0.6949 7.9348 38 1 1.2707 -1.6326 8.8441 39 1 1.0809 -2.9526 7.6651 40 1 3.8192 -2.7317 8.3202 41 1 5.8123 -4.6680 10.1655 42 1 2.6165 -3.1329 5.8735 43 1 4.0171 -2.0269 5.9370 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716863839.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:43:32 Heat of formation + Delta-G solvation = 15.972092 kcal Electronic energy + Delta-G solvation = -21363.731212 eV Core-core repulsion = 18217.212656 eV Total energy + Delta-G solvation = -3146.518556 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.14315 -38.01470 -36.67627 -34.81160 -32.86339 -31.93164 -30.47586 -29.09548 -27.62207 -26.87565 -25.84984 -24.04259 -23.11370 -21.99716 -20.92709 -18.85560 -17.93240 -16.97553 -16.31060 -16.18254 -15.66277 -14.97257 -14.67427 -14.45600 -14.00937 -13.86556 -13.60110 -13.17395 -13.04126 -12.73588 -12.67259 -12.35451 -12.19941 -12.06273 -11.87017 -11.84785 -11.78261 -11.61807 -11.01579 -10.82416 -10.70344 -10.49301 -10.44732 -10.41755 -10.28935 -10.09911 -9.93820 -9.61866 -8.85848 -8.57100 -6.90239 -5.73743 -3.02713 1.53758 2.18031 2.98091 3.46157 3.50924 3.51869 3.52706 3.88234 4.52061 4.54007 4.62173 4.65019 4.70220 4.83232 4.98260 5.15921 5.18152 5.32554 5.34525 5.36571 5.43386 5.50231 5.57120 5.61059 5.67469 5.77419 5.78125 5.86551 6.00662 6.07315 6.12462 6.17442 6.30352 6.37336 6.48705 6.63126 6.73370 6.82400 7.11284 7.49838 7.72329 8.12977 8.44684 9.56117 10.12819 10.47362 11.49003 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.032502 B = 0.003229 C = 0.003115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 861.266059 B = 8670.056370 C = 8986.604138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.010 3.990 3 C -0.146 4.146 4 C -0.089 4.089 5 C -0.207 4.207 6 C 0.639 3.361 7 O -0.521 6.521 8 N -0.605 5.605 9 C 0.101 3.899 10 C -0.122 4.122 11 C -0.078 4.078 12 C -0.132 4.132 13 C 0.169 3.831 14 N -0.731 5.731 15 C -0.241 4.241 16 H 0.070 0.930 17 C -0.013 4.013 18 N -0.932 5.932 19 Si 0.907 3.093 20 H -0.290 1.290 21 H -0.292 1.292 22 H -0.282 1.282 23 C 0.122 3.878 24 H 0.061 0.939 25 H 0.062 0.938 26 H 0.069 0.931 27 H 0.099 0.901 28 H 0.061 0.939 29 H 0.069 0.931 30 H 0.062 0.938 31 H 0.070 0.930 32 H 0.072 0.928 33 H 0.079 0.921 34 H 0.085 0.915 35 H 0.046 0.954 36 H 0.058 0.942 37 H 0.070 0.930 38 H 0.025 0.975 39 H 0.021 0.979 40 H 0.385 0.615 41 H 0.255 0.745 42 H 0.081 0.919 43 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.163 14.578 -17.740 25.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.008 4.008 3 C -0.203 4.203 4 C -0.091 4.091 5 C -0.210 4.210 6 C 0.428 3.572 7 O -0.399 6.399 8 N -0.338 5.338 9 C -0.022 4.022 10 C -0.160 4.160 11 C -0.079 4.079 12 C -0.189 4.189 13 C 0.041 3.959 14 N -0.376 5.376 15 C -0.372 4.372 16 H 0.088 0.912 17 C -0.209 4.209 18 N -0.580 5.580 19 Si 0.738 3.262 20 H -0.217 1.217 21 H -0.218 1.218 22 H -0.208 1.208 23 C 0.001 3.999 24 H 0.080 0.920 25 H 0.081 0.919 26 H 0.088 0.912 27 H 0.117 0.883 28 H 0.080 0.920 29 H 0.088 0.912 30 H 0.081 0.919 31 H 0.089 0.911 32 H 0.091 0.909 33 H 0.098 0.902 34 H 0.104 0.896 35 H 0.065 0.935 36 H 0.077 0.923 37 H 0.089 0.911 38 H 0.043 0.957 39 H 0.039 0.961 40 H 0.219 0.781 41 H 0.065 0.935 42 H 0.099 0.901 43 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -9.801 13.926 -17.702 24.563 hybrid contribution 0.253 -0.686 0.685 1.002 sum -9.547 13.239 -17.018 23.580 Atomic orbital electron populations 1.21840 0.92797 1.02847 1.02811 1.18471 0.96198 0.95170 0.90942 1.21840 1.01796 0.93846 1.02806 1.22537 0.95373 0.95727 0.95476 1.20728 1.02833 1.00950 0.96482 1.14292 0.80578 0.82567 0.79789 1.90890 1.35970 1.27154 1.85864 1.48363 1.48616 1.31497 1.05331 1.22406 0.93088 0.89001 0.97675 1.22898 0.97743 1.01648 0.93741 1.21846 0.95007 0.96181 0.94820 1.21759 0.99856 0.97318 0.99969 1.20641 0.91239 0.92303 0.91700 1.42373 1.04261 1.49842 1.41079 1.19199 0.93169 1.15798 1.09002 0.91209 1.24737 0.95327 1.00672 1.00147 1.69652 0.97664 1.46199 1.44510 0.86197 0.76764 0.81349 0.81903 1.21740 1.21810 1.20814 1.22169 1.00097 0.97994 0.79649 0.91969 0.91924 0.91210 0.88332 0.91978 0.91212 0.91922 0.91145 0.90925 0.90215 0.89596 0.93510 0.92307 0.91068 0.95719 0.96120 0.78079 0.93478 0.90082 0.90669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.83 9.15 37.16 0.34 -0.49 16 2 C 0.01 0.07 3.30 -93.40 -0.31 -0.24 16 3 C -0.15 -0.83 9.15 37.16 0.34 -0.49 16 4 C -0.09 -1.00 12.56 -37.12 -0.47 -1.46 16 5 C -0.21 -2.96 12.49 -38.84 -0.49 -3.44 16 6 C 0.64 11.07 7.69 -14.33 -0.11 10.96 16 7 O -0.52 -11.16 17.41 5.27 0.09 -11.07 16 8 N -0.61 -9.39 3.33 -173.24 -0.58 -9.97 16 9 C 0.10 1.17 6.36 -2.41 -0.02 1.15 16 10 C -0.12 -1.43 6.04 -24.46 -0.15 -1.58 16 11 C -0.08 -1.21 0.61 -152.68 -0.09 -1.30 16 12 C -0.13 -1.97 8.25 37.16 0.31 -1.66 16 13 C 0.17 3.29 5.07 -4.04 -0.02 3.27 16 14 N -0.73 -18.19 5.15 -59.91 -0.31 -18.50 16 15 C -0.24 -6.72 9.99 -15.06 -0.15 -6.87 16 16 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 17 C -0.01 -0.37 5.50 -17.43 -0.10 -0.46 16 18 N -0.93 -28.43 13.06 55.49 0.72 -27.70 16 19 Si 0.91 22.64 29.55 -169.99 -5.02 17.61 16 20 H -0.29 -7.26 7.11 56.52 0.40 -6.85 16 21 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 22 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 23 C 0.12 2.14 5.47 -3.06 -0.02 2.13 16 24 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 25 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 26 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 27 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 30 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 31 H 0.07 0.73 7.71 -51.93 -0.40 0.33 16 32 H 0.07 0.73 7.68 -51.93 -0.40 0.33 16 33 H 0.08 0.93 8.04 -51.93 -0.42 0.51 16 34 H 0.09 0.83 8.04 -51.93 -0.42 0.41 16 35 H 0.05 0.61 7.44 -51.92 -0.39 0.22 16 36 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.07 1.26 7.11 -51.93 -0.37 0.89 16 38 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.02 0.42 8.13 -51.93 -0.42 -0.01 16 40 H 0.38 10.09 6.37 -40.82 -0.26 9.83 16 41 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 42 H 0.08 1.62 7.82 -51.93 -0.41 1.22 16 43 H 0.07 1.43 7.84 -51.93 -0.41 1.03 16 LS Contribution 357.05 15.07 5.38 5.38 Total: -1.00 -33.48 357.05 -7.87 -41.35 By element: Atomic # 1 Polarization: 10.63 SS G_CDS: -7.24 Total: 3.39 kcal Atomic # 6 Polarization: 0.43 SS G_CDS: -0.92 Total: -0.50 kcal Atomic # 7 Polarization: -56.01 SS G_CDS: -0.16 Total: -56.17 kcal Atomic # 8 Polarization: -11.16 SS G_CDS: 0.09 Total: -11.07 kcal Atomic # 14 Polarization: 22.64 SS G_CDS: -5.02 Total: 17.61 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -33.48 -7.87 -41.35 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716863839.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.321 kcal (2) G-P(sol) polarization free energy of solvation -33.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.349 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds