Wall clock time and date at job start Tue Mar 31 2020 00:43:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.46817 * 2 1 4 4 C 1.47206 * 109.47021 * 119.99807 * 2 1 3 5 5 C 2.64598 * 109.47129 * 119.99672 * 2 1 3 6 6 C 4.07804 * 109.47170 * 119.99750 * 2 1 3 7 7 O 1.21610 * 119.99953 * 92.91375 * 6 5 4 8 8 N 1.34781 * 119.99554 * 272.63642 * 6 5 4 9 9 C 1.47422 * 125.65222 * 359.69675 * 8 6 5 10 10 C 1.55133 * 104.72079 * 155.81210 * 9 8 6 11 11 C 1.55155 * 101.48455 * 37.29918 * 10 9 8 12 12 C 1.52996 * 110.87640 * 82.76365 * 11 10 9 13 13 C 1.53002 * 110.71824 * 205.96708 * 11 10 9 14 14 N 1.46494 * 109.47290 * 174.97581 * 13 11 10 15 15 C 1.36936 * 120.00018 * 180.02562 * 14 13 11 16 16 H 1.07995 * 120.00030 * 359.97438 * 15 14 13 17 17 C 1.38812 * 119.99780 * 179.97438 * 15 14 13 18 18 N 1.31615 * 120.00220 * 359.97438 * 17 15 14 19 19 Si 1.86805 * 119.99917 * 180.02562 * 17 15 14 20 20 H 1.48496 * 109.47405 * 89.99731 * 19 17 15 21 21 H 1.48500 * 109.47244 * 210.00006 * 19 17 15 22 22 H 1.48502 * 109.47005 * 329.99799 * 19 17 15 23 23 C 1.47026 * 125.64340 * 179.97438 * 8 6 5 24 24 H 1.09004 * 109.46733 * 180.02562 * 1 2 3 25 25 H 1.08996 * 109.47407 * 299.99780 * 1 2 3 26 26 H 1.08992 * 109.47063 * 60.00177 * 1 2 3 27 27 H 1.08992 * 109.46974 * 240.00055 * 2 1 3 28 28 H 1.09001 * 109.47289 * 179.97438 * 3 2 1 29 29 H 1.09002 * 109.47153 * 299.99769 * 3 2 1 30 30 H 1.09004 * 109.47261 * 59.99941 * 3 2 1 31 31 H 1.08994 * 110.36675 * 274.74247 * 9 8 6 32 32 H 1.09002 * 110.36636 * 37.06410 * 9 8 6 33 33 H 1.08997 * 111.19153 * 279.18831 * 10 9 8 34 34 H 1.08998 * 110.90194 * 155.27554 * 10 9 8 35 35 H 1.09008 * 109.47036 * 304.93476 * 12 11 10 36 36 H 1.08999 * 109.47013 * 64.93486 * 12 11 10 37 37 H 1.08994 * 109.47015 * 184.93586 * 12 11 10 38 38 H 1.09005 * 109.46739 * 294.97653 * 13 11 10 39 39 H 1.09007 * 109.47237 * 54.97254 * 13 11 10 40 40 H 0.97004 * 119.99897 * 359.97438 * 14 13 11 41 41 H 0.97002 * 120.00259 * 179.97438 * 18 17 15 42 42 H 1.09004 * 109.88531 * 300.44694 * 23 8 6 43 43 H 1.08999 * 109.87911 * 61.61259 * 23 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0207 -0.6939 1.2020 5 6 2.4120 -1.2472 2.1605 6 6 2.8894 -1.9223 3.3298 7 8 3.6317 -2.8792 3.2190 8 7 2.5205 -1.4935 4.5532 9 6 1.6399 -0.3444 4.8316 10 6 1.0400 -0.6377 6.2318 11 6 2.2488 -1.2869 6.9561 12 6 3.1920 -0.2168 7.5091 13 6 1.7740 -2.2173 8.0741 14 7 2.9272 -2.9057 8.6592 15 6 2.7457 -3.7957 9.6840 16 1 1.7525 -3.9898 10.0611 17 6 3.8383 -4.4484 10.2380 18 7 5.0487 -4.2122 9.7781 19 14 3.5907 -5.6630 11.6355 20 1 3.3760 -7.0224 11.0777 21 1 4.7945 -5.6693 12.5051 22 1 2.4048 -5.2629 12.4348 23 6 2.9342 -2.0910 5.8312 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 1.8933 -0.5138 -0.8899 28 1 3.1299 1.4426 0.0005 29 1 1.6766 1.9563 -0.8900 30 1 1.6766 1.9564 0.8900 31 1 2.2170 0.5800 4.8496 32 1 0.8479 -0.2838 4.0851 33 1 0.2045 -1.3345 6.1644 34 1 0.7379 0.2854 6.7266 35 1 3.4945 0.4524 6.7035 36 1 2.6793 0.3546 8.2829 37 1 4.0742 -0.6949 7.9348 38 1 1.2707 -1.6326 8.8441 39 1 1.0809 -2.9526 7.6651 40 1 3.8192 -2.7317 8.3202 41 1 5.8123 -4.6680 10.1655 42 1 2.6165 -3.1329 5.8735 43 1 4.0171 -2.0269 5.9370 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716863839.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:43:31 Heat of formation + Delta-G solvation = -5.360458 kcal Electronic energy + Delta-G solvation = -21364.656261 eV Core-core repulsion = 18217.212656 eV Total energy + Delta-G solvation = -3147.443605 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.43391 -39.38725 -37.34296 -36.53235 -34.50017 -33.00340 -32.18964 -30.38093 -28.14905 -28.03061 -27.52503 -25.54494 -24.25622 -23.38221 -21.89125 -20.23131 -19.47498 -18.59951 -17.62673 -17.18349 -16.72796 -16.62842 -15.80071 -15.57280 -15.48773 -15.27464 -14.85771 -14.63905 -14.27240 -14.02085 -13.63841 -13.38596 -13.16305 -13.05581 -13.00199 -12.90813 -12.81691 -12.73649 -12.43723 -12.31897 -12.16348 -12.03534 -11.85462 -11.66335 -11.50844 -11.40520 -11.37993 -11.15770 -10.94697 -9.87829 -8.98835 -7.94483 -5.23034 0.40880 1.16181 1.46125 1.48555 1.56638 1.82759 2.36654 2.55842 2.93921 3.36506 3.42627 3.53243 3.77872 4.03873 4.08216 4.11721 4.19017 4.22620 4.33791 4.36098 4.45710 4.54086 4.70138 4.75820 4.82946 4.86839 4.94023 4.95663 4.97134 5.02764 5.05475 5.12547 5.18289 5.18576 5.26948 5.34906 5.37765 5.47541 5.50734 6.14558 6.26581 6.27462 6.82132 7.33902 8.10441 8.32474 9.29240 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.032502 B = 0.003229 C = 0.003115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 861.266059 B = 8670.056370 C = 8986.604138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.004 3.996 3 C -0.144 4.144 4 C -0.034 4.034 5 C -0.268 4.268 6 C 0.635 3.365 7 O -0.583 6.583 8 N -0.602 5.602 9 C 0.100 3.900 10 C -0.108 4.108 11 C -0.069 4.069 12 C -0.125 4.125 13 C 0.167 3.833 14 N -0.744 5.744 15 C -0.242 4.242 16 H 0.078 0.922 17 C -0.078 4.078 18 N -0.971 5.971 19 Si 0.973 3.027 20 H -0.291 1.291 21 H -0.296 1.296 22 H -0.266 1.266 23 C 0.127 3.873 24 H 0.053 0.947 25 H 0.063 0.937 26 H 0.095 0.905 27 H 0.116 0.884 28 H 0.053 0.947 29 H 0.095 0.905 30 H 0.063 0.937 31 H 0.092 0.908 32 H 0.096 0.904 33 H 0.083 0.917 34 H 0.122 0.878 35 H 0.070 0.930 36 H 0.075 0.925 37 H 0.033 0.967 38 H 0.039 0.961 39 H 0.017 0.983 40 H 0.374 0.626 41 H 0.250 0.750 42 H 0.045 0.955 43 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.928 17.231 -19.007 28.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.014 4.014 3 C -0.201 4.201 4 C -0.036 4.036 5 C -0.271 4.271 6 C 0.426 3.574 7 O -0.465 6.465 8 N -0.333 5.333 9 C -0.021 4.021 10 C -0.146 4.146 11 C -0.070 4.070 12 C -0.182 4.182 13 C 0.040 3.960 14 N -0.387 5.387 15 C -0.374 4.374 16 H 0.096 0.904 17 C -0.270 4.270 18 N -0.622 5.622 19 Si 0.803 3.197 20 H -0.219 1.219 21 H -0.223 1.223 22 H -0.190 1.190 23 C 0.005 3.995 24 H 0.073 0.927 25 H 0.082 0.918 26 H 0.113 0.887 27 H 0.134 0.866 28 H 0.072 0.928 29 H 0.114 0.886 30 H 0.082 0.918 31 H 0.110 0.890 32 H 0.115 0.885 33 H 0.101 0.899 34 H 0.140 0.860 35 H 0.089 0.911 36 H 0.094 0.906 37 H 0.052 0.948 38 H 0.057 0.943 39 H 0.035 0.965 40 H 0.206 0.794 41 H 0.059 0.941 42 H 0.063 0.937 43 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -12.646 16.635 -18.966 28.220 hybrid contribution 1.028 -1.442 0.950 2.009 sum -11.619 15.193 -18.016 26.275 Atomic orbital electron populations 1.21860 0.91198 1.02817 1.04198 1.18909 0.97387 0.95824 0.89249 1.21859 1.01335 0.92695 1.04180 1.23474 0.92273 0.93238 0.94653 1.20231 1.05954 1.03595 0.97331 1.14714 0.79727 0.81947 0.81022 1.90836 1.38853 1.29944 1.86865 1.48429 1.48572 1.32190 1.04123 1.22713 0.93279 0.87997 0.98125 1.22927 0.95692 1.02884 0.93128 1.21735 0.96907 0.95491 0.92888 1.21686 0.98326 0.97129 1.01044 1.20823 0.89538 0.92634 0.92973 1.42601 1.05379 1.49958 1.40758 1.19649 0.93365 1.15428 1.08968 0.90414 1.25583 0.95183 1.03119 1.03152 1.69826 0.98379 1.47768 1.46242 0.85136 0.76896 0.78758 0.78950 1.21854 1.22260 1.19021 1.21909 0.98704 0.96916 0.81992 0.92740 0.91797 0.88659 0.86626 0.92780 0.88639 0.91837 0.89016 0.88548 0.89852 0.85981 0.91149 0.90606 0.94760 0.94330 0.96529 0.79372 0.94122 0.93670 0.93421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.09 9.15 71.98 0.66 -0.44 16 2 C 0.00 0.04 3.30 -12.60 -0.04 0.00 16 3 C -0.14 -1.11 9.15 71.98 0.66 -0.45 16 4 C -0.03 -0.70 12.56 31.13 0.39 -0.31 16 5 C -0.27 -7.60 12.49 30.02 0.37 -7.23 16 6 C 0.64 23.02 7.69 85.49 0.66 23.68 16 7 O -0.58 -26.96 17.41 -4.06 -0.07 -27.03 16 8 N -0.60 -19.01 3.33 -820.27 -2.73 -21.73 16 9 C 0.10 2.05 6.36 86.93 0.55 2.60 16 10 C -0.11 -2.21 6.04 32.06 0.19 -2.02 16 11 C -0.07 -2.12 0.61 -50.99 -0.03 -2.15 16 12 C -0.12 -3.62 8.25 71.98 0.59 -3.02 16 13 C 0.17 6.48 5.07 86.38 0.44 6.92 16 14 N -0.74 -38.16 5.15 -343.45 -1.77 -39.93 16 15 C -0.24 -13.73 9.99 84.03 0.84 -12.89 16 16 H 0.08 4.19 7.83 -2.91 -0.02 4.17 16 17 C -0.08 -4.62 5.50 84.86 0.47 -4.15 16 18 N -0.97 -61.46 13.06 21.65 0.28 -61.18 16 19 Si 0.97 47.33 29.55 68.60 2.03 49.36 16 20 H -0.29 -14.08 7.11 99.48 0.71 -13.38 16 21 H -0.30 -14.47 7.11 99.48 0.71 -13.76 16 22 H -0.27 -12.03 7.11 99.48 0.71 -11.33 16 23 C 0.13 4.73 5.47 86.73 0.47 5.20 16 24 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 25 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 26 H 0.09 0.30 8.14 -2.39 -0.02 0.28 16 27 H 0.12 0.97 8.14 -2.39 -0.02 0.95 16 28 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 29 H 0.09 0.30 8.14 -2.39 -0.02 0.28 16 30 H 0.06 0.50 8.14 -2.38 -0.02 0.48 16 31 H 0.09 1.56 7.71 -2.39 -0.02 1.54 16 32 H 0.10 1.59 7.68 -2.39 -0.02 1.57 16 33 H 0.08 1.70 8.04 -2.39 -0.02 1.68 16 34 H 0.12 1.72 8.04 -2.39 -0.02 1.70 16 35 H 0.07 1.69 7.44 -2.38 -0.02 1.68 16 36 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 37 H 0.03 1.24 7.11 -2.39 -0.02 1.23 16 38 H 0.04 1.43 8.14 -2.38 -0.02 1.41 16 39 H 0.02 0.67 8.13 -2.38 -0.02 0.65 16 40 H 0.37 20.68 6.37 -92.71 -0.59 20.09 16 41 H 0.25 15.37 8.31 -92.71 -0.77 14.60 16 42 H 0.04 1.97 7.82 -2.39 -0.02 1.95 16 43 H 0.05 1.99 7.84 -2.39 -0.02 1.98 16 Total: -1.00 -77.97 357.05 4.37 -73.61 By element: Atomic # 1 Polarization: 20.77 SS G_CDS: 0.40 Total: 21.17 kcal Atomic # 6 Polarization: -0.48 SS G_CDS: 6.23 Total: 5.75 kcal Atomic # 7 Polarization: -118.63 SS G_CDS: -4.21 Total: -122.84 kcal Atomic # 8 Polarization: -26.96 SS G_CDS: -0.07 Total: -27.03 kcal Atomic # 14 Polarization: 47.33 SS G_CDS: 2.03 Total: 49.36 kcal Total: -77.97 4.37 -73.61 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716863839.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.245 kcal (2) G-P(sol) polarization free energy of solvation -77.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.605 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds