Wall clock time and date at job start Tue Mar 31 2020 00:44:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52995 * 109.47314 * 2 1 4 4 C 1.47199 * 109.46881 * 120.00020 * 2 1 3 5 5 C 2.64600 * 109.46912 * 120.00107 * 2 1 3 6 6 C 4.07806 * 109.46964 * 119.99978 * 2 1 3 7 7 O 1.21606 * 119.99867 * 223.84513 * 6 5 4 8 8 N 1.34780 * 119.99822 * 43.84912 * 6 5 4 9 9 C 1.47020 * 125.64983 * 0.02562 * 8 6 5 10 10 C 1.54324 * 107.39983 * 181.10309 * 9 8 6 11 11 C 1.55159 * 102.94134 * 22.11770 * 10 9 8 12 12 H 1.08994 * 111.00854 * 82.57414 * 11 10 9 13 13 C 1.53005 * 111.00250 * 206.38669 * 11 10 9 14 14 C 1.52996 * 109.47319 * 184.99808 * 13 11 10 15 15 N 1.46498 * 109.47052 * 179.97438 * 14 13 11 16 16 C 1.36937 * 119.99616 * 180.02562 * 15 14 13 17 17 H 1.08004 * 120.00539 * 0.02562 * 16 15 14 18 18 C 1.38813 * 119.99821 * 180.02562 * 16 15 14 19 19 N 1.31617 * 120.00070 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 119.99790 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47229 * 60.00015 * 20 18 16 22 22 H 1.48506 * 109.46797 * 180.02562 * 20 18 16 23 23 H 1.48495 * 109.47324 * 299.99711 * 20 18 16 24 24 C 1.47743 * 125.81887 * 179.97438 * 8 6 5 25 25 H 1.08999 * 109.47209 * 300.00531 * 1 2 3 26 26 H 1.09005 * 109.46887 * 60.00209 * 1 2 3 27 27 H 1.08997 * 109.47263 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47242 * 240.00021 * 2 1 3 29 29 H 1.08999 * 109.47416 * 59.99596 * 3 2 1 30 30 H 1.09002 * 109.47559 * 179.97438 * 3 2 1 31 31 H 1.09003 * 109.47236 * 300.00209 * 3 2 1 32 32 H 1.09002 * 109.88367 * 61.60808 * 9 8 6 33 33 H 1.09000 * 109.88319 * 300.59426 * 9 8 6 34 34 H 1.09004 * 110.71964 * 140.48013 * 10 9 8 35 35 H 1.08999 * 110.72009 * 263.75165 * 10 9 8 36 36 H 1.09004 * 109.46652 * 304.99845 * 13 11 10 37 37 H 1.09000 * 109.47027 * 64.99749 * 13 11 10 38 38 H 1.09002 * 109.47089 * 300.00146 * 14 13 11 39 39 H 1.09006 * 109.46757 * 59.99796 * 14 13 11 40 40 H 0.96994 * 120.00149 * 0.02562 * 15 14 13 41 41 H 0.97000 * 120.00226 * 179.97438 * 19 18 16 42 42 H 1.09003 * 110.29227 * 37.02448 * 24 8 6 43 43 H 1.08996 * 110.53057 * 274.75660 * 24 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0206 -0.6939 1.2019 5 6 2.4119 -1.2474 2.1605 6 6 2.8892 -1.9224 3.3298 7 8 3.3681 -1.2841 4.2474 8 7 2.8078 -3.2652 3.4131 9 6 2.2549 -4.1558 2.3823 10 6 2.3433 -5.5984 2.9230 11 6 2.4226 -5.3897 4.4585 12 1 1.4298 -5.2471 4.8852 13 6 3.1440 -6.5576 5.1341 14 6 3.0934 -6.3786 6.6527 15 7 3.7836 -7.4972 7.2996 16 6 3.8665 -7.5528 8.6654 17 1 3.4227 -6.7723 9.2656 18 6 4.5210 -8.6125 9.2783 19 7 5.0614 -9.5639 8.5469 20 14 4.6335 -8.6887 11.1414 21 1 3.2659 -8.7296 11.7186 22 1 5.3774 -9.9097 11.5428 23 1 5.3472 -7.4874 11.6439 24 6 3.2589 -4.0896 4.5531 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0276 0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.6767 1.9563 0.8899 30 1 3.1300 1.4425 0.0005 31 1 1.6767 1.9563 -0.8900 32 1 2.8371 -4.0674 1.4650 33 1 1.2144 -3.8961 2.1872 34 1 1.4513 -6.1655 2.6565 35 1 3.2413 -6.0942 2.5543 36 1 2.6550 -7.4931 4.8620 37 1 4.1830 -6.5818 4.8056 38 1 3.5823 -5.4432 6.9248 39 1 2.0542 -6.3544 6.9812 40 1 4.1819 -8.1983 6.7606 41 1 5.5191 -10.3042 8.9752 42 1 3.0576 -3.5767 5.4936 43 1 4.3216 -4.3152 4.4648 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717082850.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:44:36 Heat of formation + Delta-G solvation = 10.522199 kcal Electronic energy + Delta-G solvation = -20497.428585 eV Core-core repulsion = 17350.673704 eV Total energy + Delta-G solvation = -3146.754881 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.16580 -37.87523 -36.77375 -35.14179 -33.14105 -32.12226 -30.95790 -29.56046 -27.69480 -27.40355 -25.11419 -23.50237 -22.93708 -21.29771 -21.06579 -20.11660 -18.13649 -17.10293 -16.67389 -16.27934 -15.82579 -15.06495 -14.96804 -14.62458 -14.12327 -13.91716 -13.59675 -13.40157 -13.13304 -12.96350 -12.79518 -12.73665 -12.44550 -12.28008 -11.95283 -11.88449 -11.69688 -11.37207 -11.06826 -10.83286 -10.76279 -10.63525 -10.57094 -10.45256 -10.34977 -10.30588 -9.99422 -9.64754 -8.83781 -8.82336 -6.89042 -5.73477 -3.01984 1.36912 2.02705 2.76672 3.34619 3.47241 3.51101 3.52474 3.74124 4.39883 4.44739 4.47481 4.59902 4.61160 4.69515 4.77849 5.02753 5.06814 5.11804 5.25523 5.29889 5.34574 5.40616 5.48122 5.54033 5.59558 5.65933 5.69667 5.72103 5.78670 5.81505 5.89215 6.05674 6.09925 6.25268 6.38142 6.38612 6.86208 6.90005 6.97375 7.26533 7.73140 7.90811 8.45824 9.56666 10.14927 10.49408 11.49477 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.040145 B = 0.002472 C = 0.002384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 697.307206 B =11325.867370 C =11743.453862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.010 3.990 3 C -0.148 4.148 4 C -0.081 4.081 5 C -0.213 4.213 6 C 0.644 3.356 7 O -0.523 6.523 8 N -0.609 5.609 9 C 0.101 3.899 10 C -0.128 4.128 11 C -0.094 4.094 12 H 0.087 0.913 13 C -0.114 4.114 14 C 0.151 3.849 15 N -0.734 5.734 16 C -0.239 4.239 17 H 0.070 0.930 18 C -0.016 4.016 19 N -0.935 5.935 20 Si 0.908 3.092 21 H -0.286 1.286 22 H -0.291 1.291 23 H -0.286 1.286 24 C 0.111 3.889 25 H 0.062 0.938 26 H 0.070 0.930 27 H 0.062 0.938 28 H 0.101 0.899 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.069 0.931 32 H 0.068 0.932 33 H 0.068 0.932 34 H 0.084 0.916 35 H 0.081 0.919 36 H 0.070 0.930 37 H 0.066 0.934 38 H 0.020 0.980 39 H 0.018 0.982 40 H 0.383 0.617 41 H 0.255 0.745 42 H 0.085 0.915 43 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.496 16.185 -22.419 29.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.008 4.008 3 C -0.205 4.205 4 C -0.084 4.084 5 C -0.216 4.216 6 C 0.433 3.567 7 O -0.400 6.400 8 N -0.342 5.342 9 C -0.022 4.022 10 C -0.165 4.165 11 C -0.114 4.114 12 H 0.105 0.895 13 C -0.153 4.153 14 C 0.023 3.977 15 N -0.378 5.378 16 C -0.370 4.370 17 H 0.088 0.912 18 C -0.211 4.211 19 N -0.584 5.584 20 Si 0.739 3.261 21 H -0.213 1.213 22 H -0.217 1.217 23 H -0.212 1.212 24 C -0.010 4.010 25 H 0.081 0.919 26 H 0.089 0.911 27 H 0.081 0.919 28 H 0.119 0.881 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.088 0.912 32 H 0.086 0.914 33 H 0.086 0.914 34 H 0.103 0.897 35 H 0.100 0.900 36 H 0.088 0.912 37 H 0.085 0.915 38 H 0.037 0.963 39 H 0.036 0.964 40 H 0.217 0.783 41 H 0.065 0.935 42 H 0.104 0.896 43 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -9.240 16.635 -21.734 28.887 hybrid contribution 0.242 -0.369 0.833 0.943 sum -8.998 16.266 -20.901 27.971 Atomic orbital electron populations 1.21843 0.92694 1.02861 1.02932 1.18501 0.96279 0.95302 0.90753 1.21862 1.01837 0.93931 1.02876 1.22590 0.94267 0.97304 0.94207 1.20653 1.03715 1.01295 0.95962 1.14253 0.78702 0.80247 0.83510 1.90880 1.45219 1.65376 1.38557 1.48407 1.60933 1.04542 1.20328 1.22076 0.98779 0.90196 0.91157 1.22733 1.03560 0.94494 0.95759 1.22358 0.99979 0.94350 0.94715 0.89490 1.21688 1.00298 0.96566 0.96707 1.20690 0.95539 0.91917 0.89553 1.42355 1.66430 1.24970 1.04080 1.19205 1.29284 1.05512 0.83008 0.91231 1.24749 1.01096 0.97409 0.97893 1.69648 1.41949 1.12763 1.34023 0.86251 0.77527 0.76855 0.85472 1.21277 1.21695 1.21245 1.22544 0.98999 0.90333 0.89123 0.91934 0.91109 0.91920 0.88099 0.91885 0.91935 0.91191 0.91404 0.91390 0.89690 0.90032 0.91169 0.91491 0.96254 0.96414 0.78322 0.93502 0.89649 0.90462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.70 9.15 37.16 0.34 -0.37 16 2 C 0.01 0.06 3.30 -93.41 -0.31 -0.25 16 3 C -0.15 -0.79 9.15 37.16 0.34 -0.45 16 4 C -0.08 -0.80 12.56 -37.12 -0.47 -1.27 16 5 C -0.21 -2.68 12.78 -38.83 -0.50 -3.18 16 6 C 0.64 9.66 7.70 -14.33 -0.11 9.55 16 7 O -0.52 -9.79 17.36 5.27 0.09 -9.70 16 8 N -0.61 -7.87 3.34 -173.15 -0.58 -8.44 16 9 C 0.10 0.96 6.44 -3.06 -0.02 0.94 16 10 C -0.13 -1.18 6.42 -24.90 -0.16 -1.34 16 11 C -0.09 -1.14 3.00 -88.49 -0.27 -1.41 16 12 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 13 C -0.11 -1.73 4.84 -26.73 -0.13 -1.86 16 14 C 0.15 3.02 6.16 -4.04 -0.02 2.99 16 15 N -0.73 -18.93 5.60 -59.91 -0.34 -19.27 16 16 C -0.24 -6.85 9.99 -15.06 -0.15 -7.00 16 17 H 0.07 1.94 7.83 -52.48 -0.41 1.53 16 18 C -0.02 -0.46 5.50 -17.43 -0.10 -0.56 16 19 N -0.94 -28.66 13.06 55.49 0.72 -27.93 16 20 Si 0.91 22.84 29.55 -169.99 -5.02 17.81 16 21 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 22 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 23 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 24 C 0.11 1.50 5.88 -2.37 -0.01 1.49 16 25 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 26 H 0.07 0.22 8.14 -51.93 -0.42 -0.20 16 27 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 28 H 0.10 0.44 8.14 -51.93 -0.42 0.01 16 29 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.07 0.24 8.14 -51.93 -0.42 -0.18 16 32 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.08 0.73 8.04 -51.93 -0.42 0.32 16 36 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 37 H 0.07 1.03 7.96 -51.93 -0.41 0.61 16 38 H 0.02 0.40 7.75 -51.93 -0.40 0.00 16 39 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 40 H 0.38 10.27 7.67 -40.82 -0.31 9.96 16 41 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 42 H 0.09 1.28 8.05 -51.93 -0.42 0.86 16 43 H 0.08 1.07 7.91 -51.93 -0.41 0.66 16 LS Contribution 362.45 15.07 5.46 5.46 Total: -1.00 -34.21 362.45 -8.64 -42.85 By element: Atomic # 1 Polarization: 9.36 SS G_CDS: -7.42 Total: 1.94 kcal Atomic # 6 Polarization: -1.15 SS G_CDS: -1.56 Total: -2.71 kcal Atomic # 7 Polarization: -55.46 SS G_CDS: -0.19 Total: -55.65 kcal Atomic # 8 Polarization: -9.79 SS G_CDS: 0.09 Total: -9.70 kcal Atomic # 14 Polarization: 22.84 SS G_CDS: -5.02 Total: 17.81 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -34.21 -8.64 -42.85 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717082850.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.368 kcal (2) G-P(sol) polarization free energy of solvation -34.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.846 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds