Wall clock time and date at job start Tue Mar 31 2020 00:44:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52995 * 109.47314 * 2 1 4 4 C 1.47199 * 109.46881 * 120.00020 * 2 1 3 5 5 C 2.64600 * 109.46912 * 120.00107 * 2 1 3 6 6 C 4.07806 * 109.46964 * 119.99978 * 2 1 3 7 7 O 1.21606 * 119.99867 * 223.84513 * 6 5 4 8 8 N 1.34780 * 119.99822 * 43.84912 * 6 5 4 9 9 C 1.47020 * 125.64983 * 0.02562 * 8 6 5 10 10 C 1.54324 * 107.39983 * 181.10309 * 9 8 6 11 11 C 1.55159 * 102.94134 * 22.11770 * 10 9 8 12 12 H 1.08994 * 111.00854 * 82.57414 * 11 10 9 13 13 C 1.53005 * 111.00250 * 206.38669 * 11 10 9 14 14 C 1.52996 * 109.47319 * 184.99808 * 13 11 10 15 15 N 1.46498 * 109.47052 * 179.97438 * 14 13 11 16 16 C 1.36937 * 119.99616 * 180.02562 * 15 14 13 17 17 H 1.08004 * 120.00539 * 0.02562 * 16 15 14 18 18 C 1.38813 * 119.99821 * 180.02562 * 16 15 14 19 19 N 1.31617 * 120.00070 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 119.99790 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47229 * 60.00015 * 20 18 16 22 22 H 1.48506 * 109.46797 * 180.02562 * 20 18 16 23 23 H 1.48495 * 109.47324 * 299.99711 * 20 18 16 24 24 C 1.47743 * 125.81887 * 179.97438 * 8 6 5 25 25 H 1.08999 * 109.47209 * 300.00531 * 1 2 3 26 26 H 1.09005 * 109.46887 * 60.00209 * 1 2 3 27 27 H 1.08997 * 109.47263 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47242 * 240.00021 * 2 1 3 29 29 H 1.08999 * 109.47416 * 59.99596 * 3 2 1 30 30 H 1.09002 * 109.47559 * 179.97438 * 3 2 1 31 31 H 1.09003 * 109.47236 * 300.00209 * 3 2 1 32 32 H 1.09002 * 109.88367 * 61.60808 * 9 8 6 33 33 H 1.09000 * 109.88319 * 300.59426 * 9 8 6 34 34 H 1.09004 * 110.71964 * 140.48013 * 10 9 8 35 35 H 1.08999 * 110.72009 * 263.75165 * 10 9 8 36 36 H 1.09004 * 109.46652 * 304.99845 * 13 11 10 37 37 H 1.09000 * 109.47027 * 64.99749 * 13 11 10 38 38 H 1.09002 * 109.47089 * 300.00146 * 14 13 11 39 39 H 1.09006 * 109.46757 * 59.99796 * 14 13 11 40 40 H 0.96994 * 120.00149 * 0.02562 * 15 14 13 41 41 H 0.97000 * 120.00226 * 179.97438 * 19 18 16 42 42 H 1.09003 * 110.29227 * 37.02448 * 24 8 6 43 43 H 1.08996 * 110.53057 * 274.75660 * 24 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0206 -0.6939 1.2019 5 6 2.4119 -1.2474 2.1605 6 6 2.8892 -1.9224 3.3298 7 8 3.3681 -1.2841 4.2474 8 7 2.8078 -3.2652 3.4131 9 6 2.2549 -4.1558 2.3823 10 6 2.3433 -5.5984 2.9230 11 6 2.4226 -5.3897 4.4585 12 1 1.4298 -5.2471 4.8852 13 6 3.1440 -6.5576 5.1341 14 6 3.0934 -6.3786 6.6527 15 7 3.7836 -7.4972 7.2996 16 6 3.8665 -7.5528 8.6654 17 1 3.4227 -6.7723 9.2656 18 6 4.5210 -8.6125 9.2783 19 7 5.0614 -9.5639 8.5469 20 14 4.6335 -8.6887 11.1414 21 1 3.2659 -8.7296 11.7186 22 1 5.3774 -9.9097 11.5428 23 1 5.3472 -7.4874 11.6439 24 6 3.2589 -4.0896 4.5531 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0276 0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.6767 1.9563 0.8899 30 1 3.1300 1.4425 0.0005 31 1 1.6767 1.9563 -0.8900 32 1 2.8371 -4.0674 1.4650 33 1 1.2144 -3.8961 2.1872 34 1 1.4513 -6.1655 2.6565 35 1 3.2413 -6.0942 2.5543 36 1 2.6550 -7.4931 4.8620 37 1 4.1830 -6.5818 4.8056 38 1 3.5823 -5.4432 6.9248 39 1 2.0542 -6.3544 6.9812 40 1 4.1819 -8.1983 6.7606 41 1 5.5191 -10.3042 8.9752 42 1 3.0576 -3.5767 5.4936 43 1 4.3216 -4.3152 4.4648 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717082850.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:44:35 Heat of formation + Delta-G solvation = -10.770392 kcal Electronic energy + Delta-G solvation = -20498.351901 eV Core-core repulsion = 17350.673704 eV Total energy + Delta-G solvation = -3147.678197 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.23252 -39.00567 -37.34776 -36.86947 -34.64629 -33.21855 -32.42599 -30.76390 -28.78587 -28.06698 -26.47797 -25.01281 -23.86485 -22.75010 -21.87474 -21.24785 -19.21786 -19.03893 -17.65602 -17.23163 -16.75580 -16.65480 -16.08792 -15.53913 -15.38154 -15.25307 -15.07322 -14.45856 -14.41647 -14.11957 -13.94597 -13.39512 -13.11322 -13.05179 -13.00389 -12.94791 -12.79305 -12.48968 -12.36242 -12.33999 -12.23955 -12.02154 -11.76263 -11.63757 -11.57331 -11.44224 -11.34578 -11.21383 -10.92594 -9.87029 -9.01119 -7.96651 -5.25529 0.40227 1.15964 1.46030 1.49432 1.55553 1.81123 2.36702 2.55050 2.94388 3.36435 3.47545 3.55352 3.75895 4.03098 4.06543 4.15349 4.16120 4.23058 4.29070 4.43490 4.47274 4.53671 4.59169 4.73958 4.77953 4.80081 4.88809 4.91912 4.92709 4.94532 5.05655 5.10774 5.12117 5.25248 5.32167 5.34547 5.37341 5.44794 5.48400 6.14394 6.24455 6.26392 6.81070 7.32327 8.08795 8.32343 9.26557 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.040145 B = 0.002472 C = 0.002384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 697.307206 B =11325.867370 C =11743.453862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.006 3.994 3 C -0.148 4.148 4 C -0.037 4.037 5 C -0.270 4.270 6 C 0.639 3.361 7 O -0.579 6.579 8 N -0.606 5.606 9 C 0.098 3.902 10 C -0.116 4.116 11 C -0.084 4.084 12 H 0.091 0.909 13 C -0.099 4.099 14 C 0.147 3.853 15 N -0.748 5.748 16 C -0.250 4.250 17 H 0.072 0.928 18 C -0.076 4.076 19 N -0.968 5.968 20 Si 0.975 3.025 21 H -0.277 1.277 22 H -0.292 1.292 23 H -0.280 1.280 24 C 0.108 3.892 25 H 0.050 0.950 26 H 0.095 0.905 27 H 0.063 0.937 28 H 0.129 0.871 29 H 0.050 0.950 30 H 0.055 0.945 31 H 0.096 0.904 32 H 0.084 0.916 33 H 0.085 0.915 34 H 0.111 0.889 35 H 0.088 0.912 36 H 0.078 0.922 37 H 0.064 0.936 38 H 0.013 0.987 39 H 0.019 0.981 40 H 0.375 0.625 41 H 0.252 0.748 42 H 0.061 0.939 43 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.015 16.633 -24.758 31.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.012 4.012 3 C -0.205 4.205 4 C -0.039 4.039 5 C -0.273 4.273 6 C 0.430 3.570 7 O -0.461 6.461 8 N -0.338 5.338 9 C -0.023 4.023 10 C -0.153 4.153 11 C -0.104 4.104 12 H 0.109 0.891 13 C -0.137 4.137 14 C 0.021 3.979 15 N -0.390 5.390 16 C -0.382 4.382 17 H 0.090 0.910 18 C -0.268 4.268 19 N -0.618 5.618 20 Si 0.803 3.197 21 H -0.203 1.203 22 H -0.218 1.218 23 H -0.206 1.206 24 C -0.014 4.014 25 H 0.069 0.931 26 H 0.114 0.886 27 H 0.082 0.918 28 H 0.147 0.853 29 H 0.069 0.931 30 H 0.074 0.926 31 H 0.115 0.885 32 H 0.103 0.897 33 H 0.103 0.897 34 H 0.129 0.871 35 H 0.107 0.893 36 H 0.096 0.904 37 H 0.083 0.917 38 H 0.031 0.969 39 H 0.037 0.963 40 H 0.207 0.793 41 H 0.061 0.939 42 H 0.080 0.920 43 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -10.798 17.087 -24.109 31.462 hybrid contribution 0.669 -0.428 1.461 1.663 sum -10.130 16.659 -22.648 29.884 Atomic orbital electron populations 1.21861 0.91413 1.03229 1.03641 1.18902 0.97193 0.95437 0.89678 1.21892 1.01465 0.93532 1.03660 1.23487 0.91539 0.95103 0.93786 1.20370 1.06451 1.03670 0.96833 1.14600 0.78020 0.80717 0.83702 1.90828 1.47997 1.66610 1.40684 1.48490 1.60117 1.04383 1.20782 1.22322 0.99876 0.89397 0.90698 1.22740 1.05252 0.94671 0.92683 1.22211 0.99149 0.92020 0.97014 0.89064 1.21518 1.00815 0.98193 0.93190 1.20879 0.94589 0.89774 0.92703 1.42580 1.66871 1.26152 1.03441 1.19599 1.28638 1.05364 0.84604 0.91031 1.25592 1.01387 0.97357 1.02510 1.69798 1.43023 1.13329 1.35680 0.85200 0.77742 0.76703 0.80054 1.20267 1.21796 1.20629 1.22481 0.99072 0.91112 0.88737 0.93056 0.88644 0.91751 0.85342 0.93061 0.92605 0.88519 0.89740 0.89705 0.87063 0.89339 0.90381 0.91722 0.96936 0.96262 0.79261 0.93885 0.92013 0.91136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.94 9.15 71.98 0.66 -0.28 16 2 C 0.01 0.05 3.30 -12.60 -0.04 0.01 16 3 C -0.15 -1.22 9.15 71.98 0.66 -0.56 16 4 C -0.04 -0.67 12.56 31.12 0.39 -0.28 16 5 C -0.27 -6.78 12.78 30.02 0.38 -6.39 16 6 C 0.64 19.92 7.70 85.49 0.66 20.58 16 7 O -0.58 -23.23 17.36 -4.05 -0.07 -23.30 16 8 N -0.61 -15.69 3.34 -819.98 -2.74 -18.42 16 9 C 0.10 1.65 6.44 86.73 0.56 2.21 16 10 C -0.12 -1.82 6.42 31.78 0.20 -1.61 16 11 C -0.08 -1.94 3.00 -9.41 -0.03 -1.97 16 12 H 0.09 2.07 8.14 -2.39 -0.02 2.05 16 13 C -0.10 -2.93 4.84 30.59 0.15 -2.78 16 14 C 0.15 5.94 6.16 86.38 0.53 6.48 16 15 N -0.75 -39.07 5.60 -343.45 -1.92 -40.99 16 16 C -0.25 -14.49 9.99 84.03 0.84 -13.65 16 17 H 0.07 4.02 7.83 -2.91 -0.02 3.99 16 18 C -0.08 -4.48 5.50 84.86 0.47 -4.02 16 19 N -0.97 -60.03 13.06 21.65 0.28 -59.75 16 20 Si 0.97 47.21 29.55 68.60 2.03 49.24 16 21 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 22 H -0.29 -14.08 7.11 99.48 0.71 -13.37 16 23 H -0.28 -13.19 7.11 99.48 0.71 -12.49 16 24 C 0.11 2.99 5.88 86.78 0.51 3.50 16 25 H 0.05 0.46 8.14 -2.39 -0.02 0.45 16 26 H 0.09 0.20 8.14 -2.38 -0.02 0.18 16 27 H 0.06 0.42 8.14 -2.39 -0.02 0.40 16 28 H 0.13 0.56 8.14 -2.39 -0.02 0.54 16 29 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 30 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 31 H 0.10 0.31 8.14 -2.39 -0.02 0.29 16 32 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 33 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 34 H 0.11 1.25 8.14 -2.38 -0.02 1.23 16 35 H 0.09 1.32 8.04 -2.39 -0.02 1.30 16 36 H 0.08 2.22 8.14 -2.38 -0.02 2.20 16 37 H 0.06 1.95 7.96 -2.39 -0.02 1.93 16 38 H 0.01 0.53 7.75 -2.39 -0.02 0.51 16 39 H 0.02 0.78 8.14 -2.38 -0.02 0.76 16 40 H 0.38 20.46 7.67 -92.71 -0.71 19.75 16 41 H 0.25 15.13 8.31 -92.71 -0.77 14.36 16 42 H 0.06 1.98 8.05 -2.39 -0.02 1.96 16 43 H 0.07 2.03 7.91 -2.39 -0.02 2.01 16 Total: -1.00 -76.47 362.45 3.79 -72.68 By element: Atomic # 1 Polarization: 19.04 SS G_CDS: 0.27 Total: 19.31 kcal Atomic # 6 Polarization: -4.71 SS G_CDS: 5.94 Total: 1.23 kcal Atomic # 7 Polarization: -114.79 SS G_CDS: -4.38 Total: -119.17 kcal Atomic # 8 Polarization: -23.23 SS G_CDS: -0.07 Total: -23.30 kcal Atomic # 14 Polarization: 47.21 SS G_CDS: 2.03 Total: 49.24 kcal Total: -76.47 3.79 -72.68 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717082850.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.914 kcal (2) G-P(sol) polarization free energy of solvation -76.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.684 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds