Wall clock time and date at job start Tue Mar 31 2020 00:35:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.47206 * 1 3 3 C 1.17394 * 179.97438 * 2 1 4 4 C 1.47206 * 179.97438 * 180.02562 * 3 2 1 5 5 C 1.53004 * 109.46766 * 203.95552 * 4 3 2 6 6 C 1.53002 * 109.46893 * 180.02562 * 5 4 3 7 7 C 1.50695 * 109.46894 * 179.97438 * 6 5 4 8 8 O 1.21288 * 120.00071 * 0.02562 * 7 6 5 9 9 N 1.34774 * 120.00107 * 179.97438 * 7 6 5 10 10 C 1.46501 * 120.00135 * 180.02562 * 9 7 6 11 11 C 1.53002 * 109.47140 * 178.08780 * 10 9 7 12 12 N 1.46506 * 112.84735 * 294.03326 * 11 10 9 13 13 C 1.36931 * 120.00135 * 294.81607 * 12 11 10 14 14 H 1.08007 * 120.00108 * 353.94247 * 13 12 11 15 15 C 1.38812 * 120.00408 * 173.94342 * 13 12 11 16 16 N 1.31623 * 119.99688 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 120.00261 * 179.97438 * 15 13 12 18 18 H 1.48494 * 109.47209 * 0.02562 * 17 15 13 19 19 H 1.48503 * 109.46947 * 120.00291 * 17 15 13 20 20 H 1.48500 * 109.47273 * 239.99728 * 17 15 13 21 21 C 1.53774 * 113.61704 * 162.84085 * 11 10 9 22 22 C 1.53956 * 87.02102 * 220.04773 * 21 11 10 23 23 C 1.53777 * 113.61691 * 65.22646 * 11 10 9 24 24 H 1.09003 * 109.46625 * 156.04467 * 1 2 3 25 25 H 1.08998 * 109.46971 * 276.03970 * 1 2 3 26 26 H 1.09000 * 109.47454 * 36.05018 * 1 2 3 27 27 H 1.08999 * 109.46687 * 83.95566 * 4 3 2 28 28 H 1.09004 * 109.47121 * 323.95357 * 4 3 2 29 29 H 1.08995 * 109.47039 * 59.99712 * 5 4 3 30 30 H 1.09000 * 109.46669 * 299.99911 * 5 4 3 31 31 H 1.08999 * 109.46667 * 59.99948 * 6 5 4 32 32 H 1.08996 * 109.47088 * 300.00145 * 6 5 4 33 33 H 0.96998 * 119.99589 * 359.73072 * 9 7 6 34 34 H 1.08994 * 109.47243 * 298.08409 * 10 9 7 35 35 H 1.08999 * 109.47069 * 58.08397 * 10 9 7 36 36 H 0.97002 * 119.99634 * 114.81561 * 12 11 10 37 37 H 0.96995 * 120.00119 * 179.97438 * 16 15 13 38 38 H 1.09003 * 113.61536 * 334.56431 * 21 11 10 39 39 H 1.08998 * 113.61923 * 105.46310 * 21 11 10 40 40 H 1.08997 * 113.53187 * 270.81080 * 22 21 11 41 41 H 1.09001 * 113.66736 * 139.93334 * 22 21 11 42 42 H 1.08995 * 113.61581 * 254.53231 * 23 11 10 43 43 H 1.09003 * 113.61470 * 25.44079 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.4721 0.0000 0.0000 3 6 2.6460 0.0005 0.0000 4 6 4.1181 0.0018 0.0000 5 6 4.6268 1.3206 0.5857 6 6 6.1568 1.3223 0.5851 7 6 6.6579 2.6214 1.1614 8 8 5.8689 3.4629 1.5362 9 7 7.9827 2.8478 1.2614 10 6 8.4698 4.1105 1.8222 11 6 9.9991 4.0927 1.8662 12 7 10.5298 3.0933 2.7967 13 6 10.2997 3.2187 4.1407 14 1 9.8126 4.1028 4.5250 15 6 10.6925 2.2097 5.0093 16 7 11.2857 1.1321 4.5410 17 14 10.3791 2.3812 6.8429 18 1 9.7026 3.6757 7.1105 19 1 9.5133 1.2661 7.3035 20 1 11.6720 2.3377 7.5722 21 6 10.6268 5.4863 2.0353 22 6 11.6975 5.0384 1.0237 23 6 10.6550 4.0495 0.4760 24 1 -0.3633 -0.9392 -0.4173 25 1 -0.3633 0.1081 1.0219 26 1 -0.3634 0.8309 -0.6048 27 1 4.4814 -0.1060 -1.0220 28 1 4.4821 -0.8288 0.6047 29 1 4.2633 1.4285 1.6076 30 1 4.2627 2.1511 -0.0190 31 1 6.5198 1.2146 -0.4370 32 1 6.5213 0.4917 1.1895 33 1 8.6136 2.1729 0.9660 34 1 8.1340 4.9387 1.1982 35 1 8.0786 4.2345 2.8320 36 1 11.0442 2.3427 2.4607 37 1 11.5605 0.4272 5.1480 38 1 9.9949 6.2968 1.6720 39 1 11.0193 5.6700 3.0354 40 1 12.5577 4.5544 1.4862 41 1 11.9792 5.8147 0.3122 42 1 11.0702 3.0750 0.2191 43 1 10.0308 4.4665 -0.3144 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717156112.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:35:51 Heat of formation + Delta-G solvation = -0.730412 kcal Electronic energy + Delta-G solvation = -21086.540431 eV Core-core repulsion = 17939.297600 eV Total energy + Delta-G solvation = -3147.242831 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.94974 -39.87112 -36.64814 -35.28363 -35.16825 -34.18465 -31.93619 -30.74316 -28.79672 -27.09668 -26.71653 -25.65701 -23.55456 -22.63793 -21.16662 -19.71260 -19.11328 -18.32808 -17.18348 -17.08099 -16.88892 -16.50420 -15.99456 -15.68568 -15.45684 -15.11722 -14.80179 -14.69433 -14.47685 -14.26722 -14.09024 -13.76219 -13.28854 -13.16546 -13.03545 -12.96020 -12.92302 -12.56520 -12.44429 -12.14760 -11.94419 -11.85968 -11.59873 -11.48038 -11.02500 -10.86859 -10.74749 -10.59133 -10.57846 -9.90340 -8.97889 -7.94721 -5.20859 1.42793 1.45756 1.53017 1.71435 1.75899 1.78035 2.41749 2.54396 3.37028 3.39260 3.75397 3.80727 3.85079 4.00417 4.07681 4.10128 4.14004 4.24694 4.49357 4.63327 4.66640 4.73550 4.76388 4.81057 4.84625 4.85494 4.87476 4.91531 4.93346 5.02397 5.14072 5.14806 5.20415 5.30634 5.32946 5.43338 5.55125 5.66279 5.72398 6.30292 6.71463 6.72903 7.36416 7.38412 8.10407 8.34588 9.27801 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.015082 B = 0.003678 C = 0.003175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1856.084002 B = 7610.472315 C = 8817.645350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 C -0.217 4.217 3 C -0.216 4.216 4 C -0.003 4.003 5 C -0.090 4.090 6 C -0.131 4.131 7 C 0.500 3.500 8 O -0.600 6.600 9 N -0.702 5.702 10 C 0.128 3.872 11 C 0.159 3.841 12 N -0.704 5.704 13 C -0.220 4.220 14 H 0.063 0.937 15 C -0.065 4.065 16 N -0.960 5.960 17 Si 0.954 3.046 18 H -0.275 1.275 19 H -0.297 1.297 20 H -0.293 1.293 21 C -0.152 4.152 22 C -0.121 4.121 23 C -0.125 4.125 24 H 0.096 0.904 25 H 0.087 0.913 26 H 0.091 0.909 27 H 0.110 0.890 28 H 0.099 0.901 29 H 0.044 0.956 30 H 0.058 0.942 31 H 0.130 0.870 32 H 0.109 0.891 33 H 0.409 0.591 34 H 0.067 0.933 35 H 0.025 0.975 36 H 0.378 0.622 37 H 0.249 0.751 38 H 0.092 0.908 39 H 0.045 0.955 40 H 0.061 0.939 41 H 0.085 0.915 42 H 0.069 0.931 43 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.824 -0.624 -14.380 18.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C -0.217 4.217 3 C -0.216 4.216 4 C -0.039 4.039 5 C -0.128 4.128 6 C -0.170 4.170 7 C 0.288 3.712 8 O -0.482 6.482 9 N -0.352 5.352 10 C 0.002 3.998 11 C 0.067 3.933 12 N -0.344 5.344 13 C -0.352 4.352 14 H 0.081 0.919 15 C -0.258 4.258 16 N -0.611 5.611 17 Si 0.785 3.215 18 H -0.200 1.200 19 H -0.225 1.225 20 H -0.220 1.220 21 C -0.192 4.192 22 C -0.158 4.158 23 C -0.162 4.162 24 H 0.114 0.886 25 H 0.106 0.894 26 H 0.109 0.891 27 H 0.128 0.872 28 H 0.118 0.882 29 H 0.063 0.937 30 H 0.077 0.923 31 H 0.148 0.852 32 H 0.127 0.873 33 H 0.244 0.756 34 H 0.085 0.915 35 H 0.043 0.957 36 H 0.212 0.788 37 H 0.058 0.942 38 H 0.110 0.890 39 H 0.064 0.936 40 H 0.080 0.920 41 H 0.104 0.896 42 H 0.088 0.912 43 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -11.419 0.035 -13.943 18.022 hybrid contribution 0.423 -0.486 1.527 1.657 sum -10.996 -0.451 -12.416 16.591 Atomic orbital electron populations 1.19060 0.82531 1.04258 1.03968 1.23430 0.95463 1.01121 1.01731 1.23081 0.94905 1.01952 1.01690 1.18777 0.83366 0.97969 1.03765 1.21137 0.93579 0.97144 1.00933 1.21681 0.96466 0.94114 1.04735 1.21415 0.82057 0.89777 0.77932 1.90645 1.56393 1.49246 1.51917 1.45789 1.06825 1.19905 1.62638 1.21626 0.95878 0.85771 0.96557 1.21111 0.89324 0.91097 0.91742 1.42091 1.62779 1.27472 1.02010 1.19297 1.30457 1.00824 0.84618 0.91933 1.25291 1.02719 0.96745 1.01070 1.69761 1.47644 1.09283 1.34397 0.85351 0.76852 0.77034 0.82240 1.20038 1.22469 1.22010 1.23377 0.99054 0.97349 0.99467 1.22593 0.96238 0.99022 0.97980 1.23089 0.97930 1.00276 0.94948 0.88601 0.89409 0.89086 0.87162 0.88239 0.93672 0.92309 0.85224 0.87279 0.75560 0.91506 0.95663 0.78834 0.94156 0.88957 0.93578 0.92035 0.89627 0.91211 0.87681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 -0.59 10.32 70.18 0.72 0.14 16 2 C -0.22 -4.97 14.13 31.13 0.44 -4.53 16 3 C -0.22 -5.23 13.34 31.13 0.42 -4.81 16 4 C 0.00 -0.05 5.70 28.79 0.16 0.12 16 5 C -0.09 -2.16 4.46 30.60 0.14 -2.02 16 6 C -0.13 -2.90 5.70 29.85 0.17 -2.73 16 7 C 0.50 16.40 7.83 87.66 0.69 17.09 16 8 O -0.60 -24.94 15.98 -3.05 -0.05 -24.99 16 9 N -0.70 -22.70 5.44 -463.06 -2.52 -25.22 16 10 C 0.13 4.66 5.03 86.38 0.43 5.09 16 11 C 0.16 5.61 0.79 4.13 0.00 5.62 16 12 N -0.70 -32.02 5.18 -300.97 -1.56 -33.58 16 13 C -0.22 -11.66 9.06 84.03 0.76 -10.90 16 14 H 0.06 3.37 7.83 -2.91 -0.02 3.35 16 15 C -0.07 -3.65 5.50 84.86 0.47 -3.18 16 16 N -0.96 -55.95 13.07 21.65 0.28 -55.67 16 17 Si 0.95 46.28 29.55 68.60 2.03 48.31 16 18 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 19 H -0.30 -14.56 7.11 99.48 0.71 -13.86 16 20 H -0.29 -14.13 7.11 99.48 0.71 -13.42 16 21 C -0.15 -4.98 7.29 31.18 0.23 -4.76 16 22 C -0.12 -3.41 8.00 31.18 0.25 -3.16 16 23 C -0.12 -3.37 7.11 31.12 0.22 -3.15 16 24 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16 25 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 26 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 27 H 0.11 1.54 8.14 -2.39 -0.02 1.52 16 28 H 0.10 1.64 8.14 -2.38 -0.02 1.62 16 29 H 0.04 1.32 8.10 -2.39 -0.02 1.30 16 30 H 0.06 1.55 8.10 -2.39 -0.02 1.53 16 31 H 0.13 1.93 8.14 -2.39 -0.02 1.91 16 32 H 0.11 2.21 8.14 -2.39 -0.02 2.19 16 33 H 0.41 11.82 8.33 -92.71 -0.77 11.04 16 34 H 0.07 2.22 8.06 -2.39 -0.02 2.20 16 35 H 0.02 1.12 7.85 -2.39 -0.02 1.10 16 36 H 0.38 18.30 7.87 -92.71 -0.73 17.57 16 37 H 0.25 14.27 8.31 -92.71 -0.77 13.50 16 38 H 0.09 2.57 8.04 -2.39 -0.02 2.55 16 39 H 0.05 1.76 7.86 -2.39 -0.02 1.74 16 40 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 41 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 42 H 0.07 1.87 8.09 -2.39 -0.02 1.85 16 43 H 0.10 2.32 8.10 -2.39 -0.02 2.30 16 Total: -1.00 -70.53 364.64 2.78 -67.75 By element: Atomic # 1 Polarization: 35.08 SS G_CDS: -0.50 Total: 34.57 kcal Atomic # 6 Polarization: -16.28 SS G_CDS: 5.10 Total: -11.18 kcal Atomic # 7 Polarization: -110.67 SS G_CDS: -3.80 Total: -114.46 kcal Atomic # 8 Polarization: -24.94 SS G_CDS: -0.05 Total: -24.99 kcal Atomic # 14 Polarization: 46.28 SS G_CDS: 2.03 Total: 48.31 kcal Total: -70.53 2.78 -67.75 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717156112.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.021 kcal (2) G-P(sol) polarization free energy of solvation -70.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.752 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds