Wall clock time and date at job start Tue Mar 31 2020 00:49:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52995 * 109.46764 * 2 1 4 4 C 1.47192 * 109.47174 * 119.99795 * 2 1 3 5 5 C 2.64595 * 109.47266 * 120.00078 * 2 1 3 6 6 C 4.07801 * 109.47188 * 120.00029 * 2 1 3 7 7 O 1.21610 * 119.99504 * 234.15277 * 6 5 4 8 8 N 1.34768 * 120.00175 * 54.42611 * 6 5 4 9 9 C 1.46505 * 120.00064 * 179.72247 * 8 6 5 10 10 H 1.08993 * 108.44631 * 325.00530 * 9 8 6 11 11 C 1.52574 * 108.51225 * 207.31044 * 9 8 6 12 12 C 1.51037 * 109.27321 * 153.60616 * 11 9 8 13 13 C 1.53948 * 109.97024 * 92.06613 * 12 11 9 14 14 N 1.47608 * 112.14282 * 319.42075 * 13 12 11 15 15 C 1.36929 * 118.64801 * 137.84588 * 14 13 12 16 16 H 1.08004 * 120.00213 * 206.52580 * 15 14 13 17 17 C 1.38811 * 119.99809 * 26.52289 * 15 14 13 18 18 N 1.31614 * 120.00235 * 15.66720 * 17 15 14 19 19 Si 1.86806 * 120.00069 * 195.66766 * 17 15 14 20 20 H 1.48505 * 109.47201 * 90.00032 * 19 17 15 21 21 H 1.48497 * 109.47270 * 210.00006 * 19 17 15 22 22 H 1.48494 * 109.47055 * 330.00308 * 19 17 15 23 23 C 1.44584 * 122.71028 * 317.86418 * 14 13 12 24 24 C 1.47093 * 108.51160 * 82.69270 * 9 8 6 25 25 H 1.08997 * 109.47273 * 299.99872 * 1 2 3 26 26 H 1.08997 * 109.47733 * 60.00359 * 1 2 3 27 27 H 1.09009 * 109.47285 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47273 * 240.00128 * 2 1 3 29 29 H 1.09000 * 109.47278 * 180.02562 * 3 2 1 30 30 H 1.09002 * 109.47535 * 300.00003 * 3 2 1 31 31 H 1.09004 * 109.47636 * 60.00422 * 3 2 1 32 32 H 0.96999 * 120.00235 * 359.72337 * 8 6 5 33 33 H 1.08997 * 109.48941 * 273.70116 * 11 9 8 34 34 H 1.08998 * 109.48684 * 33.76793 * 11 9 8 35 35 H 1.08995 * 109.44130 * 331.90568 * 12 11 9 36 36 H 1.09004 * 109.30850 * 212.14463 * 12 11 9 37 37 H 1.08992 * 108.94605 * 198.73152 * 13 12 11 38 38 H 1.09002 * 108.94379 * 80.10156 * 13 12 11 39 39 H 0.97005 * 120.00673 * 179.97438 * 18 17 15 40 40 H 1.09003 * 109.44792 * 330.68787 * 23 14 13 41 41 H 1.08998 * 109.42662 * 210.76040 * 23 14 13 42 42 H 1.09002 * 109.32876 * 304.31773 * 24 9 8 43 43 H 1.09000 * 109.33016 * 63.79417 * 24 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0206 -0.6938 1.2018 5 6 2.4120 -1.2473 2.1604 6 6 2.8894 -1.9224 3.3297 7 8 3.1932 -1.2837 4.3190 8 7 3.0071 -3.2649 3.3318 9 6 3.5012 -3.9550 4.5260 10 1 4.2524 -3.3251 5.0023 11 6 4.1657 -5.2582 4.0923 12 6 5.2056 -5.6518 5.1145 13 6 4.5802 -6.5826 6.1692 14 7 3.2219 -6.1527 6.5552 15 6 2.2492 -7.1050 6.7036 16 1 1.2113 -6.8439 6.5589 17 6 2.5973 -8.4060 7.0399 18 7 3.7975 -8.6644 7.5142 19 14 1.3622 -9.7900 6.8194 20 1 1.5040 -10.3679 5.4588 21 1 1.6142 -10.8447 7.8339 22 1 -0.0135 -9.2576 6.9901 23 6 2.8760 -4.7674 6.7828 24 6 2.3794 -4.1321 5.4608 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5137 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 3.1299 1.4426 -0.0005 30 1 1.6765 1.9564 -0.8900 31 1 1.6766 1.9564 0.8900 32 1 2.7647 -3.7744 2.5428 33 1 3.4126 -6.0423 4.0152 34 1 4.6448 -5.1171 3.1234 35 1 5.5897 -4.7570 5.6043 36 1 6.0241 -6.1700 4.6148 37 1 5.2145 -6.5897 7.0555 38 1 4.5297 -7.5932 5.7639 39 1 4.0406 -9.5735 7.7496 40 1 3.7540 -4.2276 7.1376 41 1 2.0869 -4.7092 7.5325 42 1 1.9302 -3.1619 5.6732 43 1 1.6308 -4.7817 5.0072 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717193777.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:49:59 Heat of formation + Delta-G solvation = 22.001760 kcal Electronic energy + Delta-G solvation = -21512.627263 eV Core-core repulsion = 18366.370173 eV Total energy + Delta-G solvation = -3146.257090 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.88288 -37.65769 -36.64709 -34.80433 -32.70358 -31.95581 -31.53762 -29.89246 -27.59310 -26.20076 -24.71520 -23.76829 -22.97563 -21.46392 -20.17322 -19.31571 -18.35979 -16.73009 -16.42788 -15.95006 -15.14052 -15.07450 -14.78386 -14.37399 -13.98264 -13.84892 -13.56096 -13.35347 -12.82912 -12.64453 -12.54739 -12.35169 -11.96230 -11.85782 -11.77969 -11.40785 -11.25976 -10.85437 -10.79918 -10.58795 -10.45380 -10.37102 -10.22673 -10.13221 -10.00028 -9.77795 -9.74072 -9.59493 -8.86535 -8.38326 -6.64481 -5.76122 -3.19792 1.57098 2.22437 3.14138 3.37671 3.45138 3.46162 3.56841 4.12499 4.51401 4.57769 4.71573 4.78790 5.10488 5.21333 5.25831 5.35758 5.39901 5.46173 5.47232 5.61495 5.62839 5.72077 5.80821 5.81318 6.02983 6.06675 6.18340 6.32582 6.47705 6.50754 6.65401 6.76745 6.79501 6.85068 6.92610 7.06266 7.12981 7.45099 7.60573 7.73045 7.84729 8.25365 8.49413 9.26512 9.93397 10.38712 11.31242 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.027129 B = 0.003384 C = 0.003199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1031.865448 B = 8272.421909 C = 8750.935931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.010 3.990 3 C -0.147 4.147 4 C -0.089 4.089 5 C -0.214 4.214 6 C 0.626 3.374 7 O -0.527 6.527 8 N -0.713 5.713 9 C 0.162 3.838 10 H 0.077 0.923 11 C -0.112 4.112 12 C -0.141 4.141 13 C 0.177 3.823 14 N -0.591 5.591 15 C -0.257 4.257 16 H 0.065 0.935 17 C 0.004 3.996 18 N -0.904 5.904 19 Si 0.900 3.100 20 H -0.288 1.288 21 H -0.292 1.292 22 H -0.280 1.280 23 C 0.163 3.837 24 C -0.157 4.157 25 H 0.062 0.938 26 H 0.069 0.931 27 H 0.062 0.938 28 H 0.100 0.900 29 H 0.061 0.939 30 H 0.068 0.932 31 H 0.062 0.938 32 H 0.399 0.601 33 H 0.082 0.918 34 H 0.050 0.950 35 H 0.048 0.952 36 H 0.057 0.943 37 H 0.025 0.975 38 H 0.075 0.925 39 H 0.253 0.747 40 H 0.035 0.965 41 H 0.050 0.950 42 H 0.054 0.946 43 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.409 13.850 -15.820 21.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.008 4.008 3 C -0.204 4.204 4 C -0.092 4.092 5 C -0.217 4.217 6 C 0.412 3.588 7 O -0.405 6.405 8 N -0.363 5.363 9 C 0.060 3.940 10 H 0.095 0.905 11 C -0.150 4.150 12 C -0.180 4.180 13 C 0.052 3.948 14 N -0.312 5.312 15 C -0.387 4.387 16 H 0.083 0.917 17 C -0.194 4.194 18 N -0.549 5.549 19 Si 0.730 3.270 20 H -0.215 1.215 21 H -0.218 1.218 22 H -0.205 1.205 23 C 0.034 3.966 24 C -0.198 4.198 25 H 0.081 0.919 26 H 0.088 0.912 27 H 0.081 0.919 28 H 0.118 0.882 29 H 0.080 0.920 30 H 0.087 0.913 31 H 0.081 0.919 32 H 0.233 0.767 33 H 0.101 0.899 34 H 0.069 0.931 35 H 0.067 0.933 36 H 0.075 0.925 37 H 0.044 0.956 38 H 0.093 0.907 39 H 0.063 0.937 40 H 0.053 0.947 41 H 0.068 0.932 42 H 0.073 0.927 43 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -2.078 14.120 -14.990 20.698 hybrid contribution -0.740 -1.049 -0.539 1.392 sum -2.819 13.072 -15.529 20.493 Atomic orbital electron populations 1.21844 0.92783 1.02900 1.02841 1.18474 0.96244 0.95227 0.90842 1.21855 1.01762 0.94015 1.02803 1.22587 0.94557 0.97391 0.94636 1.20997 1.03582 1.01331 0.95822 1.14754 0.77978 0.82176 0.83875 1.90849 1.49570 1.66355 1.33693 1.46405 1.65959 1.05654 1.18260 1.20138 0.96769 0.93064 0.84071 0.90543 1.21286 0.99360 0.96488 0.97832 1.22012 0.97316 1.00646 0.98034 1.21031 0.84436 0.96009 0.93347 1.43691 1.07968 1.00910 1.78640 1.19219 0.88788 0.89602 1.41058 0.91720 1.25028 0.96781 0.98707 0.98933 1.70068 1.19943 1.19291 1.45576 0.86326 0.80965 0.82292 0.77400 1.21542 1.21821 1.20497 1.20565 0.97661 0.85919 0.92472 1.21897 0.97939 1.00430 0.99529 0.91920 0.91218 0.91894 0.88223 0.91995 0.91284 0.91893 0.76718 0.89927 0.93085 0.93292 0.92457 0.95640 0.90678 0.93705 0.94689 0.93212 0.92744 0.91841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.92 9.15 37.16 0.34 -0.58 16 2 C 0.01 0.07 3.30 -93.41 -0.31 -0.23 16 3 C -0.15 -0.94 9.15 37.16 0.34 -0.60 16 4 C -0.09 -1.01 12.56 -37.13 -0.47 -1.48 16 5 C -0.21 -3.00 13.61 -38.83 -0.53 -3.53 16 6 C 0.63 10.24 7.43 -14.33 -0.11 10.14 16 7 O -0.53 -10.51 16.40 5.27 0.09 -10.43 16 8 N -0.71 -10.56 4.91 -59.27 -0.29 -10.85 16 9 C 0.16 2.75 1.94 -70.98 -0.14 2.62 16 10 H 0.08 1.42 6.72 -51.93 -0.35 1.07 16 11 C -0.11 -1.88 4.98 -27.94 -0.14 -2.01 16 12 C -0.14 -2.58 5.72 -27.22 -0.16 -2.74 16 13 C 0.18 4.12 4.67 -2.94 -0.01 4.10 16 14 N -0.59 -14.36 2.27 -172.09 -0.39 -14.75 16 15 C -0.26 -6.87 9.44 -15.06 -0.14 -7.02 16 16 H 0.07 1.72 7.88 -52.48 -0.41 1.31 16 17 C 0.00 0.11 4.87 -17.43 -0.08 0.02 16 18 N -0.90 -25.88 11.01 55.49 0.61 -25.26 16 19 Si 0.90 21.48 29.58 -169.99 -5.03 16.45 16 20 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 21 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 22 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 23 C 0.16 3.47 5.66 -4.09 -0.02 3.45 16 24 C -0.16 -2.93 5.17 -28.59 -0.15 -3.08 16 25 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 27 H 0.06 0.41 8.14 -51.92 -0.42 -0.01 16 28 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 30 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.40 4.87 8.55 -40.82 -0.35 4.52 16 33 H 0.08 1.56 7.48 -51.93 -0.39 1.17 16 34 H 0.05 0.74 8.05 -51.93 -0.42 0.32 16 35 H 0.05 0.87 7.31 -51.93 -0.38 0.49 16 36 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 37 H 0.03 0.65 8.03 -51.93 -0.42 0.23 16 38 H 0.07 1.94 6.33 -51.93 -0.33 1.61 16 39 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 40 H 0.03 0.73 8.06 -51.93 -0.42 0.31 16 41 H 0.05 1.08 7.99 -51.93 -0.41 0.67 16 42 H 0.05 1.02 7.67 -51.93 -0.40 0.63 16 43 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 LS Contribution 348.79 15.07 5.26 5.26 Total: -1.00 -30.97 348.79 -8.54 -39.52 By element: Atomic # 1 Polarization: 8.22 SS G_CDS: -7.21 Total: 1.01 kcal Atomic # 6 Polarization: 0.63 SS G_CDS: -1.57 Total: -0.94 kcal Atomic # 7 Polarization: -50.79 SS G_CDS: -0.07 Total: -50.86 kcal Atomic # 8 Polarization: -10.51 SS G_CDS: 0.09 Total: -10.43 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.03 Total: 16.45 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -30.97 -8.54 -39.52 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717193777.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.518 kcal (2) G-P(sol) polarization free energy of solvation -30.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.516 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds