Wall clock time and date at job start Tue Mar 31 2020 00:49:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52995 * 109.46764 * 2 1 4 4 C 1.47192 * 109.47174 * 119.99795 * 2 1 3 5 5 C 2.64595 * 109.47266 * 120.00078 * 2 1 3 6 6 C 4.07801 * 109.47188 * 120.00029 * 2 1 3 7 7 O 1.21610 * 119.99504 * 234.15277 * 6 5 4 8 8 N 1.34768 * 120.00175 * 54.42611 * 6 5 4 9 9 C 1.46505 * 120.00064 * 179.72247 * 8 6 5 10 10 H 1.08993 * 108.44631 * 325.00530 * 9 8 6 11 11 C 1.52574 * 108.51225 * 207.31044 * 9 8 6 12 12 C 1.51037 * 109.27321 * 153.60616 * 11 9 8 13 13 C 1.53948 * 109.97024 * 92.06613 * 12 11 9 14 14 N 1.47608 * 112.14282 * 319.42075 * 13 12 11 15 15 C 1.36929 * 118.64801 * 137.84588 * 14 13 12 16 16 H 1.08004 * 120.00213 * 206.52580 * 15 14 13 17 17 C 1.38811 * 119.99809 * 26.52289 * 15 14 13 18 18 N 1.31614 * 120.00235 * 15.66720 * 17 15 14 19 19 Si 1.86806 * 120.00069 * 195.66766 * 17 15 14 20 20 H 1.48505 * 109.47201 * 90.00032 * 19 17 15 21 21 H 1.48497 * 109.47270 * 210.00006 * 19 17 15 22 22 H 1.48494 * 109.47055 * 330.00308 * 19 17 15 23 23 C 1.44584 * 122.71028 * 317.86418 * 14 13 12 24 24 C 1.47093 * 108.51160 * 82.69270 * 9 8 6 25 25 H 1.08997 * 109.47273 * 299.99872 * 1 2 3 26 26 H 1.08997 * 109.47733 * 60.00359 * 1 2 3 27 27 H 1.09009 * 109.47285 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47273 * 240.00128 * 2 1 3 29 29 H 1.09000 * 109.47278 * 180.02562 * 3 2 1 30 30 H 1.09002 * 109.47535 * 300.00003 * 3 2 1 31 31 H 1.09004 * 109.47636 * 60.00422 * 3 2 1 32 32 H 0.96999 * 120.00235 * 359.72337 * 8 6 5 33 33 H 1.08997 * 109.48941 * 273.70116 * 11 9 8 34 34 H 1.08998 * 109.48684 * 33.76793 * 11 9 8 35 35 H 1.08995 * 109.44130 * 331.90568 * 12 11 9 36 36 H 1.09004 * 109.30850 * 212.14463 * 12 11 9 37 37 H 1.08992 * 108.94605 * 198.73152 * 13 12 11 38 38 H 1.09002 * 108.94379 * 80.10156 * 13 12 11 39 39 H 0.97005 * 120.00673 * 179.97438 * 18 17 15 40 40 H 1.09003 * 109.44792 * 330.68787 * 23 14 13 41 41 H 1.08998 * 109.42662 * 210.76040 * 23 14 13 42 42 H 1.09002 * 109.32876 * 304.31773 * 24 9 8 43 43 H 1.09000 * 109.33016 * 63.79417 * 24 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0206 -0.6938 1.2018 5 6 2.4120 -1.2473 2.1604 6 6 2.8894 -1.9224 3.3297 7 8 3.1932 -1.2837 4.3190 8 7 3.0071 -3.2649 3.3318 9 6 3.5012 -3.9550 4.5260 10 1 4.2524 -3.3251 5.0023 11 6 4.1657 -5.2582 4.0923 12 6 5.2056 -5.6518 5.1145 13 6 4.5802 -6.5826 6.1692 14 7 3.2219 -6.1527 6.5552 15 6 2.2492 -7.1050 6.7036 16 1 1.2113 -6.8439 6.5589 17 6 2.5973 -8.4060 7.0399 18 7 3.7975 -8.6644 7.5142 19 14 1.3622 -9.7900 6.8194 20 1 1.5040 -10.3679 5.4588 21 1 1.6142 -10.8447 7.8339 22 1 -0.0135 -9.2576 6.9901 23 6 2.8760 -4.7674 6.7828 24 6 2.3794 -4.1321 5.4608 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5137 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 3.1299 1.4426 -0.0005 30 1 1.6765 1.9564 -0.8900 31 1 1.6766 1.9564 0.8900 32 1 2.7647 -3.7744 2.5428 33 1 3.4126 -6.0423 4.0152 34 1 4.6448 -5.1171 3.1234 35 1 5.5897 -4.7570 5.6043 36 1 6.0241 -6.1700 4.6148 37 1 5.2145 -6.5897 7.0555 38 1 4.5297 -7.5932 5.7639 39 1 4.0406 -9.5735 7.7496 40 1 3.7540 -4.2276 7.1376 41 1 2.0869 -4.7092 7.5325 42 1 1.9302 -3.1619 5.6732 43 1 1.6308 -4.7817 5.0072 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717193777.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:49:59 Heat of formation + Delta-G solvation = 3.988023 kcal Electronic energy + Delta-G solvation = -21513.408397 eV Core-core repulsion = 18366.370173 eV Total energy + Delta-G solvation = -3147.038224 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.23798 -39.23304 -37.33004 -36.44602 -34.24054 -33.35224 -33.02643 -31.51329 -28.06362 -27.98784 -26.12168 -25.46498 -24.29148 -22.47819 -21.62112 -21.09094 -19.58093 -18.59437 -17.58236 -17.07907 -16.94708 -16.22570 -15.89763 -15.67961 -15.48669 -15.27940 -15.12932 -14.46378 -14.31852 -14.17464 -13.62735 -13.21969 -13.10983 -13.03247 -12.93313 -12.71973 -12.55371 -12.42435 -12.33548 -12.17067 -12.05756 -11.76557 -11.64823 -11.53414 -11.39022 -11.34441 -11.30039 -11.17741 -10.44605 -10.21533 -8.65340 -7.83610 -5.30201 0.48357 1.24256 1.47952 1.48969 1.57719 2.01841 2.45026 2.53235 3.16775 3.30417 3.64862 3.74533 4.04642 4.07558 4.13333 4.17327 4.28913 4.42453 4.43965 4.47692 4.66712 4.75177 4.78339 4.91468 4.93427 4.94032 4.97541 5.10097 5.11899 5.13337 5.22055 5.28901 5.32749 5.34349 5.43954 5.47817 5.58859 5.69498 5.83131 6.17979 6.40001 6.43383 7.04037 7.20596 7.95785 8.35455 9.21652 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.027129 B = 0.003384 C = 0.003199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1031.865448 B = 8272.421909 C = 8750.935931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.005 3.995 3 C -0.147 4.147 4 C -0.044 4.044 5 C -0.273 4.273 6 C 0.629 3.371 7 O -0.572 6.572 8 N -0.700 5.700 9 C 0.168 3.832 10 H 0.065 0.935 11 C -0.101 4.101 12 C -0.130 4.130 13 C 0.186 3.814 14 N -0.602 5.602 15 C -0.262 4.262 16 H 0.064 0.936 17 C -0.047 4.047 18 N -0.935 5.935 19 Si 0.963 3.037 20 H -0.283 1.283 21 H -0.297 1.297 22 H -0.272 1.272 23 C 0.160 3.840 24 C -0.138 4.138 25 H 0.051 0.949 26 H 0.095 0.905 27 H 0.060 0.940 28 H 0.128 0.872 29 H 0.057 0.943 30 H 0.096 0.904 31 H 0.051 0.949 32 H 0.414 0.586 33 H 0.064 0.936 34 H 0.085 0.915 35 H 0.055 0.945 36 H 0.080 0.920 37 H -0.007 1.007 38 H 0.046 0.954 39 H 0.249 0.751 40 H 0.038 0.962 41 H 0.039 0.961 42 H 0.052 0.948 43 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.251 14.884 -18.887 24.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.013 4.013 3 C -0.204 4.204 4 C -0.046 4.046 5 C -0.275 4.275 6 C 0.417 3.583 7 O -0.453 6.453 8 N -0.350 5.350 9 C 0.065 3.935 10 H 0.084 0.916 11 C -0.139 4.139 12 C -0.169 4.169 13 C 0.061 3.939 14 N -0.324 5.324 15 C -0.393 4.393 16 H 0.081 0.919 17 C -0.242 4.242 18 N -0.582 5.582 19 Si 0.792 3.208 20 H -0.210 1.210 21 H -0.224 1.224 22 H -0.197 1.197 23 C 0.032 3.968 24 C -0.179 4.179 25 H 0.070 0.930 26 H 0.114 0.886 27 H 0.079 0.921 28 H 0.145 0.855 29 H 0.076 0.924 30 H 0.114 0.886 31 H 0.070 0.930 32 H 0.251 0.749 33 H 0.082 0.918 34 H 0.103 0.897 35 H 0.074 0.926 36 H 0.098 0.902 37 H 0.011 0.989 38 H 0.065 0.935 39 H 0.058 0.942 40 H 0.056 0.944 41 H 0.058 0.942 42 H 0.071 0.929 43 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -2.941 15.167 -18.100 23.796 hybrid contribution -0.514 -1.273 0.377 1.424 sum -3.455 13.893 -17.723 22.783 Atomic orbital electron populations 1.21866 0.91701 1.03030 1.03660 1.18887 0.97011 0.95621 0.89771 1.21880 1.01545 0.93326 1.03641 1.23515 0.91705 0.95184 0.94242 1.20656 1.06392 1.03742 0.96755 1.14972 0.77009 0.82259 0.84042 1.90815 1.51713 1.67237 1.35583 1.46156 1.65395 1.05419 1.18014 1.19881 0.95772 0.93247 0.84611 0.91643 1.21166 0.98479 0.95354 0.98885 1.21868 0.98024 0.99879 0.97102 1.20832 0.83754 0.96001 0.93343 1.43868 1.07923 1.01567 1.79025 1.19478 0.89312 0.90331 1.40170 0.91856 1.25737 0.98491 1.00799 0.99204 1.70229 1.21666 1.19299 1.46958 0.85325 0.79145 0.79230 0.77083 1.20978 1.22424 1.19668 1.20639 0.97515 0.84845 0.93762 1.21643 0.98300 0.99653 0.98347 0.93008 0.88582 0.92137 0.85464 0.92408 0.88560 0.93027 0.74936 0.91769 0.89663 0.92632 0.90186 0.98880 0.93502 0.94200 0.94372 0.94234 0.92892 0.92492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.37 9.15 71.98 0.66 -0.71 16 2 C 0.00 0.05 3.30 -12.60 -0.04 0.01 16 3 C -0.15 -1.43 9.15 71.98 0.66 -0.77 16 4 C -0.04 -0.90 12.56 31.12 0.39 -0.51 16 5 C -0.27 -7.34 13.61 30.02 0.41 -6.94 16 6 C 0.63 20.34 7.43 85.49 0.64 20.98 16 7 O -0.57 -23.12 16.40 -4.06 -0.07 -23.18 16 8 N -0.70 -19.89 4.91 -459.68 -2.26 -22.15 16 9 C 0.17 5.58 1.94 43.01 0.08 5.67 16 10 H 0.07 2.38 6.72 -2.39 -0.02 2.37 16 11 C -0.10 -3.22 4.98 29.81 0.15 -3.08 16 12 C -0.13 -4.63 5.72 30.27 0.17 -4.46 16 13 C 0.19 8.84 4.67 86.49 0.40 9.24 16 14 N -0.60 -29.82 2.27 -698.37 -1.58 -31.41 16 15 C -0.26 -14.26 9.44 84.03 0.79 -13.46 16 16 H 0.06 3.40 7.88 -2.91 -0.02 3.37 16 17 C -0.05 -2.60 4.87 84.86 0.41 -2.19 16 18 N -0.94 -54.95 11.01 21.65 0.24 -54.71 16 19 Si 0.96 44.62 29.58 68.60 2.03 46.65 16 20 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 21 H -0.30 -13.96 7.11 99.48 0.71 -13.26 16 22 H -0.27 -12.11 7.11 99.48 0.71 -11.41 16 23 C 0.16 6.96 5.66 87.37 0.49 7.45 16 24 C -0.14 -5.18 5.17 29.39 0.15 -5.02 16 25 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 26 H 0.10 0.44 8.14 -2.39 -0.02 0.42 16 27 H 0.06 0.61 8.14 -2.38 -0.02 0.59 16 28 H 0.13 0.85 8.14 -2.39 -0.02 0.84 16 29 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 30 H 0.10 0.45 8.14 -2.39 -0.02 0.43 16 31 H 0.05 0.63 8.14 -2.38 -0.02 0.61 16 32 H 0.41 9.30 8.55 -92.71 -0.79 8.51 16 33 H 0.06 2.34 7.48 -2.39 -0.02 2.33 16 34 H 0.08 2.18 8.05 -2.39 -0.02 2.17 16 35 H 0.05 1.93 7.31 -2.39 -0.02 1.91 16 36 H 0.08 2.51 8.14 -2.39 -0.02 2.50 16 37 H -0.01 -0.37 8.03 -2.39 -0.02 -0.39 16 38 H 0.05 2.48 6.33 -2.39 -0.02 2.46 16 39 H 0.25 14.20 8.31 -92.70 -0.77 13.43 16 40 H 0.04 1.61 8.06 -2.39 -0.02 1.59 16 41 H 0.04 1.76 7.99 -2.39 -0.02 1.74 16 42 H 0.05 2.00 7.67 -2.39 -0.02 1.98 16 43 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 Total: -1.00 -69.01 348.79 3.93 -65.08 By element: Atomic # 1 Polarization: 13.31 SS G_CDS: 0.20 Total: 13.51 kcal Atomic # 6 Polarization: 0.84 SS G_CDS: 5.37 Total: 6.21 kcal Atomic # 7 Polarization: -104.66 SS G_CDS: -3.60 Total: -108.26 kcal Atomic # 8 Polarization: -23.12 SS G_CDS: -0.07 Total: -23.18 kcal Atomic # 14 Polarization: 44.62 SS G_CDS: 2.03 Total: 46.65 kcal Total: -69.01 3.93 -65.08 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717193777.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.065 kcal (2) G-P(sol) polarization free energy of solvation -69.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.077 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds