Wall clock time and date at job start Tue Mar 31 2020 00:33:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.47202 * 1 3 3 C 1.17395 * 179.97438 * 2 1 4 4 C 1.47203 * 179.97438 * 71.31723 * 3 2 1 5 5 C 1.52992 * 109.47402 * 320.58785 * 4 3 2 6 6 C 1.53000 * 109.47081 * 180.02562 * 5 4 3 7 7 C 1.50706 * 109.46995 * 180.02562 * 6 5 4 8 8 O 1.21281 * 120.00160 * 359.97438 * 7 6 5 9 9 N 1.34777 * 119.99667 * 180.02562 * 7 6 5 10 10 C 1.47425 * 125.65136 * 359.95409 * 9 7 6 11 11 C 1.54915 * 104.83334 * 204.16738 * 10 9 7 12 12 C 1.55165 * 101.57980 * 322.99105 * 11 10 9 13 13 H 1.09002 * 110.71751 * 153.86437 * 12 11 10 14 14 N 1.46504 * 110.71935 * 277.13806 * 12 11 10 15 15 C 1.36930 * 119.99951 * 268.52420 * 14 12 11 16 16 H 1.08004 * 119.99921 * 0.02562 * 15 14 12 17 17 C 1.38811 * 120.00434 * 180.02562 * 15 14 12 18 18 N 1.31625 * 119.99304 * 359.97438 * 17 15 14 19 19 Si 1.86793 * 120.00430 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.47188 * 0.02562 * 19 17 15 21 21 H 1.48503 * 109.47123 * 119.99966 * 19 17 15 22 22 H 1.48498 * 109.47222 * 240.00018 * 19 17 15 23 23 C 1.47022 * 125.64528 * 180.02562 * 9 7 6 24 24 H 1.08997 * 109.88723 * 59.48678 * 23 9 7 25 25 C 1.53002 * 110.01360 * 298.39309 * 23 9 7 26 26 H 1.09006 * 109.46423 * 148.09113 * 1 2 3 27 27 H 1.08997 * 109.47371 * 268.08893 * 1 2 3 28 28 H 1.08998 * 109.47036 * 28.09672 * 1 2 3 29 29 H 1.08998 * 109.46848 * 200.58718 * 4 3 2 30 30 H 1.09009 * 109.47224 * 80.59193 * 4 3 2 31 31 H 1.08998 * 109.47173 * 60.00133 * 5 4 3 32 32 H 1.08998 * 109.47071 * 299.99944 * 5 4 3 33 33 H 1.08997 * 109.47171 * 60.00537 * 6 5 4 34 34 H 1.09002 * 109.47527 * 299.99938 * 6 5 4 35 35 H 1.08997 * 110.36855 * 323.00479 * 10 9 7 36 36 H 1.08999 * 110.36490 * 85.21794 * 10 9 7 37 37 H 1.08995 * 111.00392 * 204.91661 * 11 10 9 38 38 H 1.09001 * 111.00387 * 81.05917 * 11 10 9 39 39 H 0.96996 * 119.99483 * 88.52643 * 14 12 11 40 40 H 0.96998 * 119.99586 * 180.02562 * 18 17 15 41 41 H 1.09011 * 109.46546 * 302.11556 * 25 23 9 42 42 H 1.09000 * 109.47314 * 62.10845 * 25 23 9 43 43 H 1.08994 * 109.47340 * 182.12021 * 25 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.4720 0.0000 0.0000 3 6 2.6460 0.0005 0.0000 4 6 4.1180 0.0010 -0.0006 5 6 4.6288 -1.1133 0.9149 6 6 6.1588 -1.1123 0.9147 7 6 6.6619 -2.2103 1.8161 8 8 5.8743 -2.9231 2.4014 9 7 7.9871 -2.3995 1.9726 10 6 9.0502 -1.6100 1.3245 11 6 10.2831 -2.5477 1.3025 12 6 10.1404 -3.2819 2.6620 13 1 10.6196 -4.2602 2.6241 14 7 10.6967 -2.4724 3.7491 15 6 12.0077 -2.6240 4.1138 16 1 12.6319 -3.3401 3.5999 17 6 12.5347 -1.8575 5.1441 18 7 11.7741 -0.9844 5.7701 19 14 14.3230 -2.0648 5.6422 20 1 14.9574 -3.1019 4.7894 21 1 15.0384 -0.7753 5.4672 22 1 14.3953 -2.4817 7.0656 23 6 8.6120 -3.4284 2.8167 24 1 8.2992 -4.4190 2.4866 25 6 8.2147 -3.2181 4.2792 26 1 -0.3632 -0.8725 -0.5432 27 1 -0.3634 -0.0343 1.0271 28 1 -0.3633 0.9065 -0.4840 29 1 4.4811 0.9631 0.3606 30 1 4.4810 -0.1669 -1.0147 31 1 4.2656 -2.0754 0.5537 32 1 4.2659 -0.9453 1.9289 33 1 6.5216 -0.1502 1.2763 34 1 6.5222 -1.2800 -0.0992 35 1 8.7587 -1.3428 0.3088 36 1 9.2641 -0.7129 1.9055 37 1 11.2093 -1.9745 1.2633 38 1 10.2248 -3.2503 0.4711 39 1 10.1361 -1.8291 4.2103 40 1 12.1424 -0.4485 6.4898 41 1 8.5144 -2.2193 4.5970 42 1 7.1345 -3.3228 4.3810 43 1 8.7122 -3.9619 4.9014 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717797633.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:33:51 Heat of formation + Delta-G solvation = 11.191500 kcal Electronic energy + Delta-G solvation = -21306.771324 eV Core-core repulsion = 18160.045465 eV Total energy + Delta-G solvation = -3146.725858 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.95645 -37.64053 -35.73136 -33.97986 -33.40258 -31.65058 -30.79286 -29.81291 -28.67640 -26.54832 -25.19911 -23.61796 -22.92091 -21.59020 -19.58512 -18.48103 -17.54678 -16.96313 -16.39738 -16.11903 -15.63544 -14.68209 -14.56714 -14.09645 -14.03250 -13.85769 -13.68529 -13.59251 -13.23236 -12.88762 -12.76428 -12.43191 -12.29269 -12.23288 -11.66290 -11.57440 -11.28031 -11.00226 -10.98569 -10.91663 -10.77249 -10.62940 -10.22118 -10.03344 -9.91938 -9.83504 -9.63940 -9.41702 -8.98229 -8.27399 -7.04492 -5.83739 -3.13177 2.54309 2.58461 2.91383 3.30727 3.39160 3.45254 3.47352 4.08041 4.53039 4.65031 4.89684 4.94168 5.08144 5.16665 5.24855 5.30713 5.36752 5.40703 5.42412 5.47650 5.50550 5.54704 5.60451 5.65373 5.76796 5.79642 5.87721 6.00616 6.04025 6.13799 6.21281 6.36114 6.42711 6.52687 6.62974 6.74539 6.89165 7.03493 7.52059 7.65122 7.90024 8.34552 8.47092 9.46326 10.01717 10.36806 11.38562 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.035131 B = 0.002916 C = 0.002896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 796.814646 B = 9599.989670 C = 9666.903682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 C -0.203 4.203 3 C -0.180 4.180 4 C -0.008 4.008 5 C -0.098 4.098 6 C -0.137 4.137 7 C 0.525 3.475 8 O -0.548 6.548 9 N -0.609 5.609 10 C 0.105 3.895 11 C -0.160 4.160 12 C 0.171 3.829 13 H 0.069 0.931 14 N -0.713 5.713 15 C -0.243 4.243 16 H 0.072 0.928 17 C -0.011 4.011 18 N -0.930 5.930 19 Si 0.907 3.093 20 H -0.280 1.280 21 H -0.292 1.292 22 H -0.292 1.292 23 C 0.125 3.875 24 H 0.068 0.932 25 C -0.148 4.148 26 H 0.078 0.922 27 H 0.079 0.921 28 H 0.077 0.923 29 H 0.087 0.913 30 H 0.086 0.914 31 H 0.072 0.928 32 H 0.073 0.927 33 H 0.094 0.906 34 H 0.092 0.908 35 H 0.064 0.936 36 H 0.071 0.929 37 H 0.087 0.913 38 H 0.060 0.940 39 H 0.388 0.612 40 H 0.255 0.745 41 H 0.065 0.935 42 H 0.053 0.947 43 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.202 1.592 -13.369 19.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C -0.203 4.203 3 C -0.180 4.180 4 C -0.044 4.044 5 C -0.136 4.136 6 C -0.177 4.177 7 C 0.313 3.687 8 O -0.427 6.427 9 N -0.343 5.343 10 C -0.018 4.018 11 C -0.201 4.201 12 C 0.059 3.941 13 H 0.087 0.913 14 N -0.355 5.355 15 C -0.374 4.374 16 H 0.090 0.910 17 C -0.207 4.207 18 N -0.578 5.578 19 Si 0.738 3.262 20 H -0.205 1.205 21 H -0.219 1.219 22 H -0.219 1.219 23 C 0.021 3.979 24 H 0.086 0.914 25 C -0.206 4.206 26 H 0.096 0.904 27 H 0.097 0.903 28 H 0.096 0.904 29 H 0.105 0.895 30 H 0.104 0.896 31 H 0.091 0.909 32 H 0.092 0.908 33 H 0.112 0.888 34 H 0.110 0.890 35 H 0.083 0.917 36 H 0.089 0.911 37 H 0.105 0.895 38 H 0.079 0.921 39 H 0.225 0.775 40 H 0.065 0.935 41 H 0.083 0.917 42 H 0.072 0.928 43 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -14.510 1.181 -13.004 19.520 hybrid contribution 0.948 0.305 0.420 1.081 sum -13.562 1.487 -12.584 18.560 Atomic orbital electron populations 1.18824 0.84809 1.02787 1.02987 1.22403 0.93977 1.01896 1.01977 1.22366 0.93679 1.01002 1.00996 1.18729 0.84380 1.00240 1.01078 1.21269 0.93163 0.98570 1.00560 1.21653 0.96901 0.98765 1.00355 1.20219 0.80771 0.85271 0.82408 1.90670 1.54612 1.48270 1.49130 1.48697 1.04826 1.34381 1.46401 1.22299 0.87523 0.95448 0.96510 1.23517 0.97465 0.99150 0.99989 1.21201 0.89455 0.95172 0.88262 0.91269 1.42553 1.10297 1.45204 1.37483 1.19288 0.87106 1.17636 1.13337 0.90974 1.24755 0.98125 0.98995 0.98867 1.69674 1.35094 1.26994 1.26053 0.86118 0.84722 0.77199 0.78113 1.20528 1.21908 1.21882 1.21991 0.94047 0.90585 0.91230 0.91362 1.21905 1.00585 1.03261 0.94857 0.90354 0.90268 0.90409 0.89490 0.89611 0.90905 0.90778 0.88770 0.89010 0.91734 0.91055 0.89451 0.92088 0.77547 0.93475 0.91655 0.92819 0.91570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 -0.27 10.32 34.37 0.35 0.09 16 2 C -0.20 -2.24 14.13 -37.12 -0.52 -2.76 16 3 C -0.18 -2.09 13.34 -37.12 -0.50 -2.58 16 4 C -0.01 -0.07 5.70 -29.52 -0.17 -0.24 16 5 C -0.10 -1.10 4.46 -26.74 -0.12 -1.22 16 6 C -0.14 -1.52 4.71 -27.88 -0.13 -1.65 16 7 C 0.52 8.27 7.65 -10.98 -0.08 8.19 16 8 O -0.55 -10.51 15.04 5.56 0.08 -10.43 16 9 N -0.61 -9.74 3.07 -163.01 -0.50 -10.24 16 10 C 0.10 1.50 6.67 -2.53 -0.02 1.49 16 11 C -0.16 -2.51 6.77 -24.57 -0.17 -2.67 16 12 C 0.17 3.21 3.48 -66.09 -0.23 2.98 16 13 H 0.07 1.29 8.09 -51.93 -0.42 0.87 16 14 N -0.71 -16.69 4.55 -51.64 -0.23 -16.92 16 15 C -0.24 -6.35 9.96 -15.06 -0.15 -6.50 16 16 H 0.07 1.83 7.83 -52.48 -0.41 1.42 16 17 C -0.01 -0.31 5.50 -17.43 -0.10 -0.40 16 18 N -0.93 -27.18 13.06 55.49 0.72 -26.45 16 19 Si 0.91 21.70 29.55 -169.99 -5.02 16.68 16 20 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 21 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 22 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 23 C 0.13 2.22 3.42 -66.95 -0.23 1.99 16 24 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 25 C -0.15 -2.86 8.49 37.16 0.32 -2.54 16 26 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.09 0.65 8.14 -51.92 -0.42 0.23 16 31 H 0.07 0.90 8.10 -51.93 -0.42 0.48 16 32 H 0.07 0.96 8.10 -51.93 -0.42 0.54 16 33 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 34 H 0.09 0.82 7.85 -51.93 -0.41 0.41 16 35 H 0.06 0.72 7.48 -51.93 -0.39 0.33 16 36 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 37 H 0.09 1.49 8.14 -51.93 -0.42 1.06 16 38 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 39 H 0.39 9.81 5.70 -40.82 -0.23 9.57 16 40 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 41 H 0.06 1.39 6.24 -51.92 -0.32 1.07 16 42 H 0.05 1.04 6.91 -51.93 -0.36 0.68 16 43 H 0.07 1.30 8.14 -51.93 -0.42 0.87 16 LS Contribution 355.34 15.07 5.35 5.35 Total: -1.00 -31.56 355.34 -8.50 -40.06 By element: Atomic # 1 Polarization: 14.96 SS G_CDS: -7.17 Total: 7.79 kcal Atomic # 6 Polarization: -4.11 SS G_CDS: -1.74 Total: -5.85 kcal Atomic # 7 Polarization: -53.60 SS G_CDS: -0.01 Total: -53.61 kcal Atomic # 8 Polarization: -10.51 SS G_CDS: 0.08 Total: -10.43 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -31.56 -8.50 -40.06 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717797633.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.254 kcal (2) G-P(sol) polarization free energy of solvation -31.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.062 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds