Wall clock time and date at job start Tue Mar 31 2020 00:33:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.47202 * 1 3 3 C 1.17395 * 179.97438 * 2 1 4 4 C 1.47203 * 179.97438 * 71.31723 * 3 2 1 5 5 C 1.52992 * 109.47402 * 320.58785 * 4 3 2 6 6 C 1.53000 * 109.47081 * 180.02562 * 5 4 3 7 7 C 1.50706 * 109.46995 * 180.02562 * 6 5 4 8 8 O 1.21281 * 120.00160 * 359.97438 * 7 6 5 9 9 N 1.34777 * 119.99667 * 180.02562 * 7 6 5 10 10 C 1.47425 * 125.65136 * 359.95409 * 9 7 6 11 11 C 1.54915 * 104.83334 * 204.16738 * 10 9 7 12 12 C 1.55165 * 101.57980 * 322.99105 * 11 10 9 13 13 H 1.09002 * 110.71751 * 153.86437 * 12 11 10 14 14 N 1.46504 * 110.71935 * 277.13806 * 12 11 10 15 15 C 1.36930 * 119.99951 * 268.52420 * 14 12 11 16 16 H 1.08004 * 119.99921 * 0.02562 * 15 14 12 17 17 C 1.38811 * 120.00434 * 180.02562 * 15 14 12 18 18 N 1.31625 * 119.99304 * 359.97438 * 17 15 14 19 19 Si 1.86793 * 120.00430 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.47188 * 0.02562 * 19 17 15 21 21 H 1.48503 * 109.47123 * 119.99966 * 19 17 15 22 22 H 1.48498 * 109.47222 * 240.00018 * 19 17 15 23 23 C 1.47022 * 125.64528 * 180.02562 * 9 7 6 24 24 H 1.08997 * 109.88723 * 59.48678 * 23 9 7 25 25 C 1.53002 * 110.01360 * 298.39309 * 23 9 7 26 26 H 1.09006 * 109.46423 * 148.09113 * 1 2 3 27 27 H 1.08997 * 109.47371 * 268.08893 * 1 2 3 28 28 H 1.08998 * 109.47036 * 28.09672 * 1 2 3 29 29 H 1.08998 * 109.46848 * 200.58718 * 4 3 2 30 30 H 1.09009 * 109.47224 * 80.59193 * 4 3 2 31 31 H 1.08998 * 109.47173 * 60.00133 * 5 4 3 32 32 H 1.08998 * 109.47071 * 299.99944 * 5 4 3 33 33 H 1.08997 * 109.47171 * 60.00537 * 6 5 4 34 34 H 1.09002 * 109.47527 * 299.99938 * 6 5 4 35 35 H 1.08997 * 110.36855 * 323.00479 * 10 9 7 36 36 H 1.08999 * 110.36490 * 85.21794 * 10 9 7 37 37 H 1.08995 * 111.00392 * 204.91661 * 11 10 9 38 38 H 1.09001 * 111.00387 * 81.05917 * 11 10 9 39 39 H 0.96996 * 119.99483 * 88.52643 * 14 12 11 40 40 H 0.96998 * 119.99586 * 180.02562 * 18 17 15 41 41 H 1.09011 * 109.46546 * 302.11556 * 25 23 9 42 42 H 1.09000 * 109.47314 * 62.10845 * 25 23 9 43 43 H 1.08994 * 109.47340 * 182.12021 * 25 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.4720 0.0000 0.0000 3 6 2.6460 0.0005 0.0000 4 6 4.1180 0.0010 -0.0006 5 6 4.6288 -1.1133 0.9149 6 6 6.1588 -1.1123 0.9147 7 6 6.6619 -2.2103 1.8161 8 8 5.8743 -2.9231 2.4014 9 7 7.9871 -2.3995 1.9726 10 6 9.0502 -1.6100 1.3245 11 6 10.2831 -2.5477 1.3025 12 6 10.1404 -3.2819 2.6620 13 1 10.6196 -4.2602 2.6241 14 7 10.6967 -2.4724 3.7491 15 6 12.0077 -2.6240 4.1138 16 1 12.6319 -3.3401 3.5999 17 6 12.5347 -1.8575 5.1441 18 7 11.7741 -0.9844 5.7701 19 14 14.3230 -2.0648 5.6422 20 1 14.9574 -3.1019 4.7894 21 1 15.0384 -0.7753 5.4672 22 1 14.3953 -2.4817 7.0656 23 6 8.6120 -3.4284 2.8167 24 1 8.2992 -4.4190 2.4866 25 6 8.2147 -3.2181 4.2792 26 1 -0.3632 -0.8725 -0.5432 27 1 -0.3634 -0.0343 1.0271 28 1 -0.3633 0.9065 -0.4840 29 1 4.4811 0.9631 0.3606 30 1 4.4810 -0.1669 -1.0147 31 1 4.2656 -2.0754 0.5537 32 1 4.2659 -0.9453 1.9289 33 1 6.5216 -0.1502 1.2763 34 1 6.5222 -1.2800 -0.0992 35 1 8.7587 -1.3428 0.3088 36 1 9.2641 -0.7129 1.9055 37 1 11.2093 -1.9745 1.2633 38 1 10.2248 -3.2503 0.4711 39 1 10.1361 -1.8291 4.2103 40 1 12.1424 -0.4485 6.4898 41 1 8.5144 -2.2193 4.5970 42 1 7.1345 -3.3228 4.3810 43 1 8.7122 -3.9619 4.9014 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717797633.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:33:51 Heat of formation + Delta-G solvation = -6.790747 kcal Electronic energy + Delta-G solvation = -21307.551092 eV Core-core repulsion = 18160.045465 eV Total energy + Delta-G solvation = -3147.505627 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.26386 -39.00092 -36.59502 -35.72522 -34.24897 -33.30480 -32.21290 -30.99180 -29.96427 -27.38872 -26.72553 -25.47774 -24.07179 -22.67291 -20.97366 -19.75570 -19.40079 -18.10738 -17.60605 -17.16510 -16.81074 -16.21276 -15.81703 -15.64701 -15.29737 -14.75940 -14.67845 -14.47021 -14.43528 -14.18244 -14.02233 -13.75697 -13.46625 -13.27023 -13.03521 -12.93986 -12.88155 -12.52193 -12.49847 -12.32011 -12.20816 -11.99559 -11.85566 -11.63085 -11.43610 -10.92524 -10.80749 -10.61235 -10.56779 -9.59475 -8.98413 -7.91569 -5.19411 1.49780 1.50937 1.60092 1.68703 1.72259 1.78888 2.10301 2.58339 3.36683 3.40206 3.56508 3.81511 3.89186 4.00219 4.07221 4.12272 4.28970 4.33101 4.41157 4.50435 4.60776 4.64073 4.66692 4.76288 4.79261 4.81585 4.82885 4.85418 4.89111 4.97758 5.08725 5.15083 5.20321 5.25344 5.31675 5.35370 5.42497 5.49329 5.58558 6.30225 6.66339 6.73841 7.22845 7.37432 8.11505 8.35105 9.31977 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.035131 B = 0.002916 C = 0.002896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 796.814646 B = 9599.989670 C = 9666.903682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 C -0.219 4.219 3 C -0.215 4.215 4 C -0.002 4.002 5 C -0.090 4.090 6 C -0.126 4.126 7 C 0.517 3.483 8 O -0.590 6.590 9 N -0.610 5.610 10 C 0.108 3.892 11 C -0.148 4.148 12 C 0.162 3.838 13 H 0.071 0.929 14 N -0.724 5.724 15 C -0.232 4.232 16 H 0.081 0.919 17 C -0.076 4.076 18 N -0.970 5.970 19 Si 0.969 3.031 20 H -0.264 1.264 21 H -0.296 1.296 22 H -0.301 1.301 23 C 0.129 3.871 24 H 0.076 0.924 25 C -0.135 4.135 26 H 0.091 0.909 27 H 0.087 0.913 28 H 0.095 0.905 29 H 0.102 0.898 30 H 0.109 0.891 31 H 0.056 0.944 32 H 0.047 0.953 33 H 0.113 0.887 34 H 0.128 0.872 35 H 0.111 0.889 36 H 0.055 0.945 37 H 0.075 0.925 38 H 0.092 0.908 39 H 0.376 0.624 40 H 0.248 0.752 41 H 0.040 0.960 42 H 0.047 0.953 43 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.166 1.725 -16.069 21.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C -0.219 4.219 3 C -0.215 4.215 4 C -0.038 4.038 5 C -0.128 4.128 6 C -0.165 4.165 7 C 0.308 3.692 8 O -0.471 6.471 9 N -0.343 5.343 10 C -0.014 4.014 11 C -0.188 4.188 12 C 0.052 3.948 13 H 0.089 0.911 14 N -0.365 5.365 15 C -0.363 4.363 16 H 0.099 0.901 17 C -0.268 4.268 18 N -0.621 5.621 19 Si 0.799 3.201 20 H -0.188 1.188 21 H -0.224 1.224 22 H -0.228 1.228 23 C 0.025 3.975 24 H 0.094 0.906 25 C -0.193 4.193 26 H 0.109 0.891 27 H 0.106 0.894 28 H 0.113 0.887 29 H 0.120 0.880 30 H 0.127 0.873 31 H 0.075 0.925 32 H 0.066 0.934 33 H 0.131 0.869 34 H 0.146 0.854 35 H 0.129 0.871 36 H 0.073 0.927 37 H 0.094 0.906 38 H 0.110 0.890 39 H 0.211 0.789 40 H 0.057 0.943 41 H 0.059 0.941 42 H 0.066 0.934 43 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -14.470 1.289 -15.770 21.441 hybrid contribution 0.833 0.183 1.230 1.497 sum -13.636 1.471 -14.540 19.988 Atomic orbital electron populations 1.19055 0.82647 1.04221 1.03950 1.23423 0.95472 1.01383 1.01587 1.23083 0.94909 1.01813 1.01707 1.18774 0.83264 0.99968 1.01810 1.21147 0.93468 0.98667 0.99548 1.21691 0.96339 0.97476 1.01019 1.21127 0.80129 0.85661 0.82302 1.90655 1.55524 1.50024 1.50882 1.48768 1.05437 1.34059 1.46071 1.22379 0.86411 0.94090 0.98508 1.23365 0.97639 0.99342 0.98474 1.21426 0.89776 0.94982 0.88661 0.91091 1.42672 1.09442 1.45560 1.38854 1.19668 0.88196 1.16289 1.12194 0.90132 1.25494 1.01793 0.99697 0.99793 1.69829 1.36665 1.28598 1.26999 0.85124 0.80599 0.77084 0.77244 1.18816 1.22372 1.22833 1.21811 0.93563 0.91785 0.90376 0.90565 1.21739 0.99875 1.01344 0.96353 0.89096 0.89447 0.88673 0.87990 0.87275 0.92488 0.93389 0.86906 0.85448 0.87095 0.92697 0.90643 0.88999 0.78942 0.94272 0.94063 0.93413 0.92603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 -0.54 10.32 70.18 0.72 0.18 16 2 C -0.22 -4.65 14.13 31.13 0.44 -4.21 16 3 C -0.22 -4.77 13.34 31.13 0.42 -4.35 16 4 C 0.00 -0.03 5.70 28.79 0.16 0.13 16 5 C -0.09 -1.92 4.46 30.59 0.14 -1.78 16 6 C -0.13 -2.42 4.71 29.85 0.14 -2.28 16 7 C 0.52 15.52 7.65 87.66 0.67 16.19 16 8 O -0.59 -22.61 15.04 -3.03 -0.05 -22.65 16 9 N -0.61 -18.38 3.07 -788.03 -2.42 -20.80 16 10 C 0.11 2.76 6.67 86.86 0.58 3.34 16 11 C -0.15 -4.20 6.77 31.99 0.22 -3.99 16 12 C 0.16 5.86 3.48 46.18 0.16 6.02 16 13 H 0.07 2.55 8.09 -2.39 -0.02 2.53 16 14 N -0.72 -33.97 4.55 -317.30 -1.44 -35.42 16 15 C -0.23 -12.07 9.96 84.03 0.84 -11.24 16 16 H 0.08 3.99 7.83 -2.91 -0.02 3.97 16 17 C -0.08 -4.19 5.50 84.86 0.47 -3.72 16 18 N -0.97 -58.03 13.06 21.65 0.28 -57.75 16 19 Si 0.97 44.93 29.55 68.60 2.03 46.96 16 20 H -0.26 -11.36 7.11 99.48 0.71 -10.65 16 21 H -0.30 -13.81 7.11 99.48 0.71 -13.10 16 22 H -0.30 -14.24 7.11 99.48 0.71 -13.53 16 23 C 0.13 4.48 3.42 45.34 0.15 4.63 16 24 H 0.08 2.54 8.14 -2.39 -0.02 2.52 16 25 C -0.13 -5.35 8.49 71.98 0.61 -4.74 16 26 H 0.09 0.91 8.14 -2.38 -0.02 0.89 16 27 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 28 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 29 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 30 H 0.11 1.28 8.14 -2.38 -0.02 1.26 16 31 H 0.06 1.38 8.10 -2.39 -0.02 1.36 16 32 H 0.05 1.25 8.10 -2.39 -0.02 1.23 16 33 H 0.11 1.83 8.14 -2.39 -0.02 1.81 16 34 H 0.13 1.61 7.85 -2.39 -0.02 1.59 16 35 H 0.11 1.87 7.48 -2.39 -0.02 1.85 16 36 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 37 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 38 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16 39 H 0.38 19.46 5.70 -92.71 -0.53 18.93 16 40 H 0.25 14.54 8.31 -92.71 -0.77 13.77 16 41 H 0.04 1.82 6.24 -2.38 -0.01 1.80 16 42 H 0.05 1.91 6.91 -2.39 -0.02 1.90 16 43 H 0.05 2.27 8.14 -2.39 -0.02 2.25 16 Total: -1.00 -70.50 355.34 4.58 -65.92 By element: Atomic # 1 Polarization: 29.08 SS G_CDS: 0.46 Total: 29.54 kcal Atomic # 6 Polarization: -11.52 SS G_CDS: 5.72 Total: -5.81 kcal Atomic # 7 Polarization: -110.39 SS G_CDS: -3.58 Total: -113.96 kcal Atomic # 8 Polarization: -22.61 SS G_CDS: -0.05 Total: -22.65 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 2.03 Total: 46.96 kcal Total: -70.50 4.58 -65.92 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717797633.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.132 kcal (2) G-P(sol) polarization free energy of solvation -70.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.923 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds