Wall clock time and date at job start Tue Mar 31 2020 00:33:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.47201 * 1 3 3 C 1.17400 * 179.97438 * 2 1 4 4 C 1.47202 * 179.97438 * 143.85027 * 3 2 1 5 5 C 1.52997 * 109.47060 * 271.36945 * 4 3 2 6 6 C 1.53000 * 109.47006 * 180.02562 * 5 4 3 7 7 C 1.50703 * 109.47365 * 180.02562 * 6 5 4 8 8 O 1.21281 * 119.99536 * 359.97438 * 7 6 5 9 9 N 1.34773 * 120.00147 * 180.02562 * 7 6 5 10 10 C 1.47422 * 125.65048 * 359.96005 * 9 7 6 11 11 C 1.55114 * 104.94616 * 156.02941 * 10 9 7 12 12 C 1.55157 * 101.48646 * 36.77762 * 11 10 9 13 13 H 1.08998 * 110.71978 * 83.16656 * 12 11 10 14 14 N 1.46499 * 110.72389 * 206.26780 * 12 11 10 15 15 C 1.36939 * 119.99547 * 271.15719 * 14 12 11 16 16 H 1.07993 * 120.00716 * 359.97438 * 15 14 12 17 17 C 1.38817 * 119.99459 * 179.97438 * 15 14 12 18 18 N 1.31619 * 120.00154 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 119.99635 * 179.97438 * 17 15 14 20 20 H 1.48506 * 109.47297 * 269.99668 * 19 17 15 21 21 H 1.48503 * 109.47261 * 149.99848 * 19 17 15 22 22 H 1.48500 * 109.47454 * 29.99841 * 19 17 15 23 23 C 1.47025 * 125.64628 * 179.97438 * 9 7 6 24 24 H 1.09001 * 110.01178 * 300.51084 * 23 9 7 25 25 C 1.52996 * 109.87962 * 61.60868 * 23 9 7 26 26 H 1.09006 * 109.46795 * 124.77494 * 1 2 3 27 27 H 1.08998 * 109.47445 * 244.77548 * 1 2 3 28 28 H 1.08996 * 109.47234 * 4.77992 * 1 2 3 29 29 H 1.09006 * 109.46877 * 151.37196 * 4 3 2 30 30 H 1.08996 * 109.47306 * 31.37116 * 4 3 2 31 31 H 1.09004 * 109.47096 * 60.00913 * 5 4 3 32 32 H 1.08994 * 109.47649 * 300.00505 * 5 4 3 33 33 H 1.08998 * 109.47255 * 60.00360 * 6 5 4 34 34 H 1.09003 * 109.47552 * 300.00146 * 6 5 4 35 35 H 1.09003 * 110.36796 * 274.74644 * 10 9 7 36 36 H 1.09000 * 110.36693 * 36.95529 * 10 9 7 37 37 H 1.09002 * 110.94187 * 278.78897 * 11 10 9 38 38 H 1.09000 * 111.16500 * 154.86846 * 11 10 9 39 39 H 0.96998 * 120.00185 * 91.15103 * 14 12 11 40 40 H 0.96993 * 120.00007 * 0.02562 * 18 17 15 41 41 H 1.09003 * 109.46933 * 177.80457 * 25 23 9 42 42 H 1.09001 * 109.47278 * 297.80576 * 25 23 9 43 43 H 1.08998 * 109.47243 * 57.81101 * 25 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.4720 0.0000 0.0000 3 6 2.6460 0.0005 0.0000 4 6 4.1180 0.0017 -0.0004 5 6 4.6284 -0.0323 1.4415 6 6 6.1584 -0.0305 1.4411 7 6 6.6612 -0.0646 2.8614 8 8 5.8734 -0.0877 3.7831 9 7 7.9864 -0.0685 3.1072 10 6 9.0497 -0.0425 2.0865 11 6 10.2858 0.5511 2.8116 12 6 10.1394 -0.0662 4.2275 13 1 10.5548 -1.0736 4.2539 14 7 10.7820 0.7840 5.2327 15 6 12.1062 0.6071 5.5335 16 1 12.6767 -0.1593 5.0301 17 6 12.7153 1.4131 6.4855 18 7 12.0202 2.3475 7.0987 19 14 14.5214 1.1713 6.8964 20 1 14.6501 0.1913 8.0047 21 1 15.1125 2.4688 7.3118 22 1 15.2375 0.6618 5.6994 23 6 8.6109 -0.0998 4.4379 24 1 8.2972 0.7683 5.0176 25 6 8.2145 -1.3842 5.1686 26 1 -0.3633 -0.5862 -0.8442 27 1 -0.3634 -0.4379 0.9296 28 1 -0.3633 1.0240 -0.0856 29 1 4.4805 0.9041 -0.4929 30 1 4.4820 -0.8754 -0.5354 31 1 4.2661 -0.9348 1.9340 32 1 4.2645 0.8447 1.9767 33 1 6.5205 0.8721 0.9488 34 1 6.5228 -0.9074 0.9059 35 1 9.2663 -1.0524 1.7384 36 1 8.7568 0.5917 1.2497 37 1 10.2288 1.6389 2.8519 38 1 11.2128 0.2273 2.3382 39 1 10.2696 1.4722 5.6851 40 1 11.0823 2.4728 6.8857 41 1 8.7118 -1.4190 6.1380 42 1 7.1343 -1.4012 5.3136 43 1 8.5151 -2.2475 4.5750 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717797635.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:33:57 Heat of formation + Delta-G solvation = 6.088522 kcal Electronic energy + Delta-G solvation = -21066.462330 eV Core-core repulsion = 17919.515190 eV Total energy + Delta-G solvation = -3146.947140 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.06854 -37.69358 -35.82326 -34.42065 -33.50061 -31.78666 -30.97704 -29.85807 -28.76397 -26.64542 -25.05250 -23.26448 -22.97807 -21.68951 -20.20547 -18.81015 -17.50652 -17.13075 -16.49415 -16.23330 -15.63184 -15.00338 -14.67084 -14.27571 -14.10721 -13.80572 -13.74362 -13.64042 -13.48509 -13.07525 -12.85641 -12.62396 -12.46757 -12.23836 -11.95579 -11.72687 -11.57935 -11.24570 -11.09269 -10.96787 -10.63969 -10.55008 -10.23353 -10.05074 -9.99072 -9.90496 -9.61941 -9.23068 -8.96738 -8.45153 -7.12291 -6.16212 -3.17998 2.47361 2.51764 2.76779 3.12086 3.48725 3.53269 3.67234 4.00628 4.50327 4.61816 4.79049 4.83068 4.94027 5.06410 5.15955 5.23387 5.24926 5.29624 5.34572 5.35474 5.39447 5.43326 5.44311 5.55429 5.63736 5.69701 5.73222 5.87557 5.93086 5.95577 6.01083 6.11359 6.21474 6.36802 6.50536 6.53340 6.66028 6.82509 7.45443 7.72132 7.75426 8.32013 8.68830 9.13529 10.00054 10.13890 11.31689 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.045828 B = 0.002687 C = 0.002641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 610.838672 B =10418.505126 C =10599.851150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 C -0.200 4.200 3 C -0.183 4.183 4 C -0.007 4.007 5 C -0.099 4.099 6 C -0.136 4.136 7 C 0.524 3.476 8 O -0.544 6.544 9 N -0.611 5.611 10 C 0.099 3.901 11 C -0.155 4.155 12 C 0.181 3.819 13 H 0.067 0.933 14 N -0.726 5.726 15 C -0.335 4.335 16 H 0.067 0.933 17 C -0.043 4.043 18 N -0.941 5.941 19 Si 1.084 2.916 20 H -0.295 1.295 21 H -0.288 1.288 22 H -0.294 1.294 23 C 0.125 3.875 24 H 0.073 0.927 25 C -0.153 4.153 26 H 0.078 0.922 27 H 0.079 0.921 28 H 0.078 0.922 29 H 0.086 0.914 30 H 0.086 0.914 31 H 0.073 0.927 32 H 0.074 0.926 33 H 0.093 0.907 34 H 0.093 0.907 35 H 0.065 0.935 36 H 0.070 0.930 37 H 0.073 0.927 38 H 0.077 0.923 39 H 0.368 0.632 40 H 0.256 0.744 41 H 0.068 0.932 42 H 0.061 0.939 43 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.819 -6.246 -16.593 23.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C -0.200 4.200 3 C -0.183 4.183 4 C -0.043 4.043 5 C -0.137 4.137 6 C -0.176 4.176 7 C 0.313 3.687 8 O -0.422 6.422 9 N -0.345 5.345 10 C -0.025 4.025 11 C -0.196 4.196 12 C 0.070 3.930 13 H 0.085 0.915 14 N -0.368 5.368 15 C -0.466 4.466 16 H 0.085 0.915 17 C -0.241 4.241 18 N -0.585 5.585 19 Si 0.914 3.086 20 H -0.223 1.223 21 H -0.214 1.214 22 H -0.221 1.221 23 C 0.021 3.979 24 H 0.091 0.909 25 C -0.212 4.212 26 H 0.096 0.904 27 H 0.098 0.902 28 H 0.097 0.903 29 H 0.104 0.896 30 H 0.104 0.896 31 H 0.092 0.908 32 H 0.092 0.908 33 H 0.112 0.888 34 H 0.111 0.889 35 H 0.083 0.917 36 H 0.088 0.912 37 H 0.091 0.909 38 H 0.095 0.905 39 H 0.202 0.798 40 H 0.067 0.933 41 H 0.087 0.913 42 H 0.080 0.920 43 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -13.901 -5.865 -15.236 21.442 hybrid contribution -1.313 -0.346 -0.969 1.668 sum -15.214 -6.212 -16.205 23.079 Atomic orbital electron populations 1.18835 0.84771 1.02919 1.02954 1.22419 0.93987 1.02075 1.01509 1.22339 0.93664 1.01044 1.01236 1.18712 0.84449 1.03206 0.97964 1.21281 0.93032 1.04341 0.95007 1.21652 0.97046 1.04411 0.94485 1.20274 0.80666 0.76307 0.91450 1.90688 1.54490 1.50413 1.46619 1.48612 1.04849 1.72452 1.08580 1.22408 0.88176 1.00583 0.91305 1.23577 0.95708 1.01414 0.98942 1.21183 0.88358 0.95039 0.88465 0.91547 1.42364 1.09492 1.39553 1.45380 1.20036 0.86594 1.18025 1.21917 0.91519 1.25812 1.06516 0.95842 0.95907 1.70847 1.09508 1.33900 1.44291 0.83188 0.74152 0.75807 0.75434 1.22252 1.21370 1.22095 1.21907 0.94175 0.98692 0.83093 0.90863 1.22033 1.02052 0.96437 1.00636 0.90372 0.90212 0.90315 0.89555 0.89582 0.90802 0.90772 0.88830 0.88872 0.91679 0.91206 0.90852 0.90464 0.79766 0.93256 0.91309 0.91957 0.93067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 -0.26 10.32 34.37 0.35 0.10 16 2 C -0.20 -2.10 14.13 -37.12 -0.52 -2.63 16 3 C -0.18 -2.00 13.34 -37.12 -0.50 -2.49 16 4 C -0.01 -0.06 5.70 -29.52 -0.17 -0.23 16 5 C -0.10 -1.03 4.46 -26.73 -0.12 -1.15 16 6 C -0.14 -1.36 4.71 -27.88 -0.13 -1.49 16 7 C 0.52 7.82 7.64 -10.99 -0.08 7.74 16 8 O -0.54 -10.15 15.03 5.56 0.08 -10.07 16 9 N -0.61 -9.23 3.07 -162.89 -0.50 -9.73 16 10 C 0.10 1.23 6.70 -2.42 -0.02 1.22 16 11 C -0.16 -2.50 6.79 -24.47 -0.17 -2.67 16 12 C 0.18 3.48 3.12 -66.09 -0.21 3.27 16 13 H 0.07 1.30 7.81 -51.93 -0.41 0.89 16 14 N -0.73 -17.62 5.23 -51.65 -0.27 -17.89 16 15 C -0.33 -9.09 9.97 -15.06 -0.15 -9.24 16 16 H 0.07 1.77 7.83 -52.49 -0.41 1.36 16 17 C -0.04 -1.22 5.50 -17.43 -0.10 -1.31 16 18 N -0.94 -28.75 13.70 55.49 0.76 -27.99 16 19 Si 1.08 25.46 29.92 -169.99 -5.09 20.37 16 20 H -0.29 -6.77 7.11 56.52 0.40 -6.36 16 21 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 22 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 23 C 0.13 2.23 3.21 -66.95 -0.22 2.01 16 24 H 0.07 1.47 7.70 -51.93 -0.40 1.07 16 25 C -0.15 -2.61 9.09 37.16 0.34 -2.28 16 26 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 28 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.07 0.87 8.10 -51.93 -0.42 0.45 16 32 H 0.07 0.90 8.10 -51.93 -0.42 0.48 16 33 H 0.09 0.77 7.85 -51.93 -0.41 0.37 16 34 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.07 0.70 7.47 -51.93 -0.39 0.31 16 37 H 0.07 1.30 8.14 -51.93 -0.42 0.87 16 38 H 0.08 1.20 8.14 -51.93 -0.42 0.77 16 39 H 0.37 9.41 6.36 -40.82 -0.26 9.15 16 40 H 0.26 7.74 6.77 -40.82 -0.28 7.46 16 41 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 42 H 0.06 1.10 6.90 -51.93 -0.36 0.74 16 43 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 LS Contribution 357.41 15.07 5.39 5.39 Total: -1.00 -33.41 357.41 -8.50 -41.91 By element: Atomic # 1 Polarization: 14.34 SS G_CDS: -7.19 Total: 7.15 kcal Atomic # 6 Polarization: -7.46 SS G_CDS: -1.68 Total: -9.14 kcal Atomic # 7 Polarization: -55.60 SS G_CDS: -0.01 Total: -55.61 kcal Atomic # 8 Polarization: -10.15 SS G_CDS: 0.08 Total: -10.07 kcal Atomic # 14 Polarization: 25.46 SS G_CDS: -5.09 Total: 20.37 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -33.41 -8.50 -41.91 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717797635.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.998 kcal (2) G-P(sol) polarization free energy of solvation -33.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.910 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds