Wall clock time and date at job start Tue Mar 31 2020 00:33:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.47201 * 1 3 3 C 1.17400 * 179.97438 * 2 1 4 4 C 1.47202 * 179.97438 * 143.85027 * 3 2 1 5 5 C 1.52997 * 109.47060 * 271.36945 * 4 3 2 6 6 C 1.53000 * 109.47006 * 180.02562 * 5 4 3 7 7 C 1.50703 * 109.47365 * 180.02562 * 6 5 4 8 8 O 1.21281 * 119.99536 * 359.97438 * 7 6 5 9 9 N 1.34773 * 120.00147 * 180.02562 * 7 6 5 10 10 C 1.47422 * 125.65048 * 359.96005 * 9 7 6 11 11 C 1.55114 * 104.94616 * 156.02941 * 10 9 7 12 12 C 1.55157 * 101.48646 * 36.77762 * 11 10 9 13 13 H 1.08998 * 110.71978 * 83.16656 * 12 11 10 14 14 N 1.46499 * 110.72389 * 206.26780 * 12 11 10 15 15 C 1.36939 * 119.99547 * 271.15719 * 14 12 11 16 16 H 1.07993 * 120.00716 * 359.97438 * 15 14 12 17 17 C 1.38817 * 119.99459 * 179.97438 * 15 14 12 18 18 N 1.31619 * 120.00154 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 119.99635 * 179.97438 * 17 15 14 20 20 H 1.48506 * 109.47297 * 269.99668 * 19 17 15 21 21 H 1.48503 * 109.47261 * 149.99848 * 19 17 15 22 22 H 1.48500 * 109.47454 * 29.99841 * 19 17 15 23 23 C 1.47025 * 125.64628 * 179.97438 * 9 7 6 24 24 H 1.09001 * 110.01178 * 300.51084 * 23 9 7 25 25 C 1.52996 * 109.87962 * 61.60868 * 23 9 7 26 26 H 1.09006 * 109.46795 * 124.77494 * 1 2 3 27 27 H 1.08998 * 109.47445 * 244.77548 * 1 2 3 28 28 H 1.08996 * 109.47234 * 4.77992 * 1 2 3 29 29 H 1.09006 * 109.46877 * 151.37196 * 4 3 2 30 30 H 1.08996 * 109.47306 * 31.37116 * 4 3 2 31 31 H 1.09004 * 109.47096 * 60.00913 * 5 4 3 32 32 H 1.08994 * 109.47649 * 300.00505 * 5 4 3 33 33 H 1.08998 * 109.47255 * 60.00360 * 6 5 4 34 34 H 1.09003 * 109.47552 * 300.00146 * 6 5 4 35 35 H 1.09003 * 110.36796 * 274.74644 * 10 9 7 36 36 H 1.09000 * 110.36693 * 36.95529 * 10 9 7 37 37 H 1.09002 * 110.94187 * 278.78897 * 11 10 9 38 38 H 1.09000 * 111.16500 * 154.86846 * 11 10 9 39 39 H 0.96998 * 120.00185 * 91.15103 * 14 12 11 40 40 H 0.96993 * 120.00007 * 0.02562 * 18 17 15 41 41 H 1.09003 * 109.46933 * 177.80457 * 25 23 9 42 42 H 1.09001 * 109.47278 * 297.80576 * 25 23 9 43 43 H 1.08998 * 109.47243 * 57.81101 * 25 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.4720 0.0000 0.0000 3 6 2.6460 0.0005 0.0000 4 6 4.1180 0.0017 -0.0004 5 6 4.6284 -0.0323 1.4415 6 6 6.1584 -0.0305 1.4411 7 6 6.6612 -0.0646 2.8614 8 8 5.8734 -0.0877 3.7831 9 7 7.9864 -0.0685 3.1072 10 6 9.0497 -0.0425 2.0865 11 6 10.2858 0.5511 2.8116 12 6 10.1394 -0.0662 4.2275 13 1 10.5548 -1.0736 4.2539 14 7 10.7820 0.7840 5.2327 15 6 12.1062 0.6071 5.5335 16 1 12.6767 -0.1593 5.0301 17 6 12.7153 1.4131 6.4855 18 7 12.0202 2.3475 7.0987 19 14 14.5214 1.1713 6.8964 20 1 14.6501 0.1913 8.0047 21 1 15.1125 2.4688 7.3118 22 1 15.2375 0.6618 5.6994 23 6 8.6109 -0.0998 4.4379 24 1 8.2972 0.7683 5.0176 25 6 8.2145 -1.3842 5.1686 26 1 -0.3633 -0.5862 -0.8442 27 1 -0.3634 -0.4379 0.9296 28 1 -0.3633 1.0240 -0.0856 29 1 4.4805 0.9041 -0.4929 30 1 4.4820 -0.8754 -0.5354 31 1 4.2661 -0.9348 1.9340 32 1 4.2645 0.8447 1.9767 33 1 6.5205 0.8721 0.9488 34 1 6.5228 -0.9074 0.9059 35 1 9.2663 -1.0524 1.7384 36 1 8.7568 0.5917 1.2497 37 1 10.2288 1.6389 2.8519 38 1 11.2128 0.2273 2.3382 39 1 10.2696 1.4722 5.6851 40 1 11.0823 2.4728 6.8857 41 1 8.7118 -1.4190 6.1380 42 1 7.1343 -1.4012 5.3136 43 1 8.5151 -2.2475 4.5750 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717797635.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:33:56 Heat of formation + Delta-G solvation = -14.190456 kcal Electronic energy + Delta-G solvation = -21067.341693 eV Core-core repulsion = 17919.515190 eV Total energy + Delta-G solvation = -3147.826502 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.31435 -39.02805 -36.63422 -36.23557 -34.29085 -33.37507 -32.34463 -31.00208 -30.01127 -27.41221 -26.68376 -24.98971 -24.16574 -22.73964 -21.62741 -20.05905 -19.35897 -18.20440 -17.58901 -17.19054 -16.83573 -16.55897 -15.87662 -15.68223 -15.34590 -14.87417 -14.75534 -14.62417 -14.44976 -14.31024 -13.97465 -13.77176 -13.56788 -13.31079 -13.21433 -13.01079 -12.76408 -12.66469 -12.51863 -12.32929 -12.15452 -11.89209 -11.85030 -11.69390 -11.28834 -10.95733 -10.84520 -10.64643 -10.58138 -9.70011 -9.14496 -8.39151 -5.34759 1.59757 1.62898 1.68356 1.70475 1.77338 1.83997 1.97387 2.72429 3.33660 3.38176 3.48053 3.64030 3.73025 3.92751 4.05054 4.06783 4.10107 4.28399 4.33105 4.41659 4.46830 4.58108 4.60789 4.63107 4.73738 4.74941 4.79768 4.82975 4.85894 4.88598 4.95924 5.12532 5.13352 5.17212 5.19110 5.27194 5.32537 5.40146 5.61560 6.46854 6.57610 6.72312 7.05061 7.15684 7.94186 8.08071 9.12107 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.045828 B = 0.002687 C = 0.002641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 610.838672 B =10418.505126 C =10599.851150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 C -0.220 4.220 3 C -0.215 4.215 4 C -0.001 4.001 5 C -0.092 4.092 6 C -0.123 4.123 7 C 0.516 3.484 8 O -0.592 6.592 9 N -0.612 5.612 10 C 0.106 3.894 11 C -0.148 4.148 12 C 0.174 3.826 13 H 0.068 0.932 14 N -0.742 5.742 15 C -0.324 4.324 16 H 0.075 0.925 17 C -0.108 4.108 18 N -0.978 5.978 19 Si 1.131 2.869 20 H -0.287 1.287 21 H -0.297 1.297 22 H -0.267 1.267 23 C 0.130 3.870 24 H 0.038 0.962 25 C -0.143 4.143 26 H 0.095 0.905 27 H 0.086 0.914 28 H 0.090 0.910 29 H 0.106 0.894 30 H 0.109 0.891 31 H 0.053 0.947 32 H 0.048 0.952 33 H 0.122 0.878 34 H 0.129 0.871 35 H 0.096 0.904 36 H 0.108 0.892 37 H 0.053 0.947 38 H 0.088 0.912 39 H 0.356 0.644 40 H 0.242 0.758 41 H 0.053 0.947 42 H 0.051 0.949 43 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.419 -7.610 -19.856 25.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C -0.220 4.220 3 C -0.215 4.215 4 C -0.037 4.037 5 C -0.131 4.131 6 C -0.162 4.162 7 C 0.307 3.693 8 O -0.473 6.473 9 N -0.345 5.345 10 C -0.015 4.015 11 C -0.189 4.189 12 C 0.064 3.936 13 H 0.086 0.914 14 N -0.383 5.383 15 C -0.455 4.455 16 H 0.093 0.907 17 C -0.299 4.299 18 N -0.626 5.626 19 Si 0.956 3.044 20 H -0.214 1.214 21 H -0.224 1.224 22 H -0.192 1.192 23 C 0.025 3.975 24 H 0.057 0.943 25 C -0.201 4.201 26 H 0.113 0.887 27 H 0.105 0.895 28 H 0.109 0.891 29 H 0.124 0.876 30 H 0.127 0.873 31 H 0.072 0.928 32 H 0.067 0.933 33 H 0.140 0.860 34 H 0.147 0.853 35 H 0.114 0.886 36 H 0.126 0.874 37 H 0.072 0.928 38 H 0.107 0.893 39 H 0.188 0.812 40 H 0.052 0.948 41 H 0.072 0.928 42 H 0.070 0.930 43 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -13.517 -7.273 -18.579 24.100 hybrid contribution -1.546 0.036 0.023 1.546 sum -15.063 -7.237 -18.556 24.972 Atomic orbital electron populations 1.19052 0.82744 1.04104 1.04033 1.23425 0.95490 1.01966 1.01085 1.23119 0.94971 1.01553 1.01888 1.18780 0.83129 1.05203 0.96588 1.21167 0.93659 1.02158 0.96084 1.21699 0.96165 1.07347 0.90995 1.21287 0.79929 0.74857 0.93196 1.90674 1.55592 1.52387 1.48612 1.48698 1.05682 1.72386 1.07773 1.22585 0.85244 1.02874 0.90843 1.23395 0.98414 1.00162 0.96915 1.21395 0.88696 0.94402 0.89096 0.91420 1.42565 1.08911 1.40128 1.46739 1.20390 0.87731 1.16876 1.20550 0.90700 1.27239 1.10137 0.95897 0.96602 1.70967 1.09056 1.36180 1.46402 0.82581 0.69998 0.75449 0.76384 1.21447 1.22362 1.19191 1.21584 0.93541 0.97557 0.84784 0.94334 1.21917 1.01104 0.96908 1.00179 0.88678 0.89507 0.89116 0.87618 0.87271 0.92845 0.93341 0.85983 0.85326 0.88612 0.87354 0.92840 0.89323 0.81179 0.94767 0.92844 0.92989 0.91097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 -0.52 10.32 70.18 0.72 0.20 16 2 C -0.22 -4.45 14.13 31.13 0.44 -4.01 16 3 C -0.22 -4.47 13.34 31.13 0.42 -4.05 16 4 C 0.00 -0.01 5.70 28.79 0.16 0.15 16 5 C -0.09 -1.79 4.46 30.59 0.14 -1.65 16 6 C -0.12 -2.00 4.71 29.85 0.14 -1.86 16 7 C 0.52 14.57 7.64 87.66 0.67 15.24 16 8 O -0.59 -22.40 15.03 -3.03 -0.05 -22.44 16 9 N -0.61 -17.27 3.07 -787.64 -2.41 -19.69 16 10 C 0.11 2.21 6.70 86.93 0.58 2.79 16 11 C -0.15 -4.45 6.79 32.06 0.22 -4.23 16 12 C 0.17 6.57 3.12 46.18 0.14 6.72 16 13 H 0.07 2.55 7.81 -2.39 -0.02 2.53 16 14 N -0.74 -36.76 5.23 -317.33 -1.66 -38.42 16 15 C -0.32 -17.64 9.97 84.03 0.84 -16.80 16 16 H 0.08 3.88 7.83 -2.91 -0.02 3.86 16 17 C -0.11 -6.20 5.50 84.86 0.47 -5.73 16 18 N -0.98 -61.63 13.70 21.65 0.30 -61.33 16 19 Si 1.13 51.23 29.92 68.60 2.05 53.28 16 20 H -0.29 -12.55 7.11 99.48 0.71 -11.84 16 21 H -0.30 -13.80 7.11 99.48 0.71 -13.09 16 22 H -0.27 -10.77 7.11 99.48 0.71 -10.06 16 23 C 0.13 4.67 3.21 45.34 0.15 4.82 16 24 H 0.04 1.64 7.70 -2.39 -0.02 1.62 16 25 C -0.14 -4.91 9.09 71.98 0.65 -4.26 16 26 H 0.09 0.79 8.14 -2.38 -0.02 0.77 16 27 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 28 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 29 H 0.11 1.11 8.14 -2.38 -0.02 1.09 16 30 H 0.11 1.07 8.14 -2.39 -0.02 1.05 16 31 H 0.05 1.24 8.10 -2.38 -0.02 1.22 16 32 H 0.05 1.17 8.10 -2.39 -0.02 1.15 16 33 H 0.12 1.38 7.85 -2.39 -0.02 1.37 16 34 H 0.13 1.28 8.14 -2.39 -0.02 1.26 16 35 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16 36 H 0.11 1.52 7.47 -2.39 -0.02 1.51 16 37 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 38 H 0.09 2.47 8.14 -2.39 -0.02 2.45 16 39 H 0.36 19.13 6.36 -92.71 -0.59 18.54 16 40 H 0.24 15.35 6.77 -92.71 -0.63 14.72 16 41 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 42 H 0.05 1.88 6.90 -2.39 -0.02 1.86 16 43 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 Total: -1.00 -76.72 357.41 4.50 -72.22 By element: Atomic # 1 Polarization: 28.53 SS G_CDS: 0.54 Total: 29.06 kcal Atomic # 6 Polarization: -18.41 SS G_CDS: 5.74 Total: -12.67 kcal Atomic # 7 Polarization: -115.66 SS G_CDS: -3.78 Total: -119.44 kcal Atomic # 8 Polarization: -22.40 SS G_CDS: -0.05 Total: -22.44 kcal Atomic # 14 Polarization: 51.23 SS G_CDS: 2.05 Total: 53.28 kcal Total: -76.72 4.50 -72.22 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717797635.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.027 kcal (2) G-P(sol) polarization free energy of solvation -76.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.218 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds