Wall clock time and date at job start Tue Mar 31 2020 00:49:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.46768 * 2 1 4 4 C 1.47200 * 109.47438 * 120.00039 * 2 1 3 5 5 C 2.64598 * 109.47211 * 120.00073 * 2 1 3 6 6 C 4.07799 * 109.47186 * 119.99983 * 2 1 3 7 7 O 1.21613 * 120.00075 * 127.38433 * 6 5 4 8 8 N 1.34777 * 119.99674 * 307.37874 * 6 5 4 9 9 C 1.46499 * 119.99665 * 179.72650 * 8 6 5 10 10 H 1.09000 * 110.02169 * 33.88698 * 9 8 6 11 11 C 1.54272 * 110.03485 * 272.44411 * 9 8 6 12 12 C 1.54889 * 104.19819 * 217.10629 * 11 9 8 13 13 C 1.54887 * 102.74865 * 37.94293 * 12 11 9 14 14 H 1.08996 * 110.49072 * 80.73104 * 13 12 11 15 15 C 1.52999 * 110.48817 * 203.38244 * 13 12 11 16 16 N 1.46498 * 109.46734 * 289.77154 * 15 13 12 17 17 C 1.36935 * 120.00198 * 179.97438 * 16 15 13 18 18 H 1.08008 * 119.99895 * 0.02562 * 17 16 15 19 19 C 1.38807 * 120.00401 * 180.02562 * 17 16 15 20 20 N 1.31621 * 120.00320 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 120.00258 * 180.02562 * 19 17 16 22 22 H 1.48510 * 109.47081 * 60.00048 * 21 19 17 23 23 H 1.48498 * 109.47540 * 179.97438 * 21 19 17 24 24 H 1.48504 * 109.47309 * 300.00171 * 21 19 17 25 25 C 1.53878 * 110.03156 * 155.27874 * 9 8 6 26 26 H 1.09001 * 109.47054 * 300.00089 * 1 2 3 27 27 H 1.09003 * 109.47160 * 59.99924 * 1 2 3 28 28 H 1.09000 * 109.47527 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47054 * 239.99911 * 2 1 3 30 30 H 1.09008 * 109.46412 * 180.02562 * 3 2 1 31 31 H 1.08995 * 109.47475 * 299.99715 * 3 2 1 32 32 H 1.09001 * 109.47371 * 60.00682 * 3 2 1 33 33 H 0.97001 * 120.00485 * 0.02562 * 8 6 5 34 34 H 1.09006 * 110.48347 * 335.78754 * 11 9 8 35 35 H 1.09003 * 110.48577 * 98.42799 * 11 9 8 36 36 H 1.09000 * 110.75187 * 279.62806 * 12 11 9 37 37 H 1.09001 * 110.91044 * 156.33070 * 12 11 9 38 38 H 1.08994 * 109.47221 * 49.76906 * 15 13 12 39 39 H 1.08999 * 109.47211 * 169.77545 * 15 13 12 40 40 H 0.97001 * 120.00078 * 0.02562 * 16 15 13 41 41 H 0.97000 * 120.00565 * 180.02562 * 20 19 17 42 42 H 1.09003 * 110.03007 * 238.56318 * 25 9 8 43 43 H 1.08995 * 110.02953 * 359.95428 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0207 -0.6939 1.2019 5 6 2.4120 -1.2473 2.1604 6 6 2.8894 -1.9224 3.3297 7 8 4.0087 -2.3977 3.3430 8 7 2.0981 -2.0308 4.4153 9 6 2.5843 -2.7266 5.6094 10 1 3.6563 -2.5662 5.7242 11 6 2.2833 -4.2357 5.5009 12 6 1.9163 -4.6548 6.9462 13 6 1.1108 -3.4362 7.4613 14 1 0.0816 -3.4811 7.1053 15 6 1.1481 -3.3769 8.9897 16 7 0.3511 -4.4757 9.5405 17 6 0.2377 -4.6264 10.8968 18 1 0.7356 -3.9349 11.5605 19 6 -0.5171 -5.6679 11.4188 20 7 -1.1235 -6.5109 10.6101 21 14 -0.6723 -5.8730 13.2690 22 1 -1.2902 -4.6549 13.8520 23 1 -1.5259 -7.0512 13.5666 24 1 0.6752 -6.0756 13.8594 25 6 1.8388 -2.2182 6.8558 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 1.8933 -0.5139 -0.8900 30 1 3.1300 1.4425 -0.0005 31 1 1.6766 1.9564 -0.8899 32 1 1.6767 1.9564 0.8900 33 1 1.2052 -1.6519 4.4046 34 1 1.4434 -4.4098 4.8283 35 1 3.1655 -4.7771 5.1592 36 1 2.8149 -4.8048 7.5447 37 1 1.2995 -5.5534 6.9460 38 1 2.1789 -3.4687 9.3318 39 1 0.7368 -2.4253 9.3265 40 1 -0.0958 -5.0970 8.9445 41 1 -1.6512 -7.2385 10.9748 42 1 2.5491 -1.8119 7.5759 43 1 1.1159 -1.4532 6.5724 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717871103.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:49:34 Heat of formation + Delta-G solvation = -0.490789 kcal Electronic energy + Delta-G solvation = -20485.787392 eV Core-core repulsion = 17338.554951 eV Total energy + Delta-G solvation = -3147.232440 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.06374 -38.03044 -36.78791 -34.84766 -33.47383 -32.20298 -30.99900 -28.78827 -27.87305 -27.70219 -24.80911 -23.90862 -22.16224 -21.93927 -20.36831 -19.69063 -18.83648 -17.02011 -16.60474 -16.40246 -15.38605 -15.05192 -14.93729 -14.73270 -14.24951 -13.99778 -13.83097 -13.41946 -13.02966 -12.79427 -12.75769 -12.50471 -12.24766 -11.99715 -11.91551 -11.81031 -11.34123 -11.09977 -10.83529 -10.76923 -10.63974 -10.60451 -10.55900 -10.33349 -10.28502 -10.20987 -9.95446 -9.65100 -9.17130 -8.83742 -6.88593 -5.74001 -3.02169 1.35639 2.03561 2.90948 3.33624 3.45646 3.49826 3.50969 3.89475 4.45249 4.58714 4.60174 4.61899 4.73368 4.78979 5.04767 5.06431 5.10764 5.28851 5.34352 5.47690 5.52498 5.55795 5.61512 5.64608 5.67575 5.69050 5.70188 5.88721 5.89509 6.09556 6.14345 6.27083 6.31734 6.48941 6.57060 6.61568 6.82322 6.95401 6.95715 7.28886 7.71703 7.96951 8.45330 9.56230 10.15318 10.49940 11.48938 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.034567 B = 0.002459 C = 0.002398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 809.824755 B =11381.890434 C =11671.715714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.008 3.992 3 C -0.146 4.146 4 C -0.078 4.078 5 C -0.222 4.222 6 C 0.631 3.369 7 O -0.525 6.525 8 N -0.709 5.709 9 C 0.140 3.860 10 H 0.094 0.906 11 C -0.135 4.135 12 C -0.111 4.111 13 C -0.097 4.097 14 H 0.075 0.925 15 C 0.160 3.840 16 N -0.732 5.732 17 C -0.238 4.238 18 H 0.069 0.931 19 C -0.015 4.015 20 N -0.935 5.935 21 Si 0.907 3.093 22 H -0.286 1.286 23 H -0.291 1.291 24 H -0.286 1.286 25 C -0.122 4.122 26 H 0.062 0.938 27 H 0.070 0.930 28 H 0.062 0.938 29 H 0.101 0.899 30 H 0.062 0.938 31 H 0.070 0.930 32 H 0.062 0.938 33 H 0.403 0.597 34 H 0.067 0.933 35 H 0.068 0.932 36 H 0.070 0.930 37 H 0.073 0.927 38 H 0.020 0.980 39 H 0.017 0.983 40 H 0.384 0.616 41 H 0.255 0.745 42 H 0.078 0.922 43 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.051 14.404 -21.708 26.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.010 4.010 3 C -0.204 4.204 4 C -0.080 4.080 5 C -0.225 4.225 6 C 0.417 3.583 7 O -0.403 6.403 8 N -0.359 5.359 9 C 0.037 3.963 10 H 0.112 0.888 11 C -0.173 4.173 12 C -0.149 4.149 13 C -0.116 4.116 14 H 0.094 0.906 15 C 0.032 3.968 16 N -0.376 5.376 17 C -0.370 4.370 18 H 0.087 0.913 19 C -0.211 4.211 20 N -0.583 5.583 21 Si 0.738 3.262 22 H -0.213 1.213 23 H -0.217 1.217 24 H -0.213 1.213 25 C -0.161 4.161 26 H 0.081 0.919 27 H 0.089 0.911 28 H 0.081 0.919 29 H 0.118 0.882 30 H 0.081 0.919 31 H 0.089 0.911 32 H 0.081 0.919 33 H 0.238 0.762 34 H 0.086 0.914 35 H 0.087 0.913 36 H 0.089 0.911 37 H 0.092 0.908 38 H 0.038 0.962 39 H 0.035 0.965 40 H 0.217 0.783 41 H 0.065 0.935 42 H 0.097 0.903 43 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 4.880 14.080 -21.472 26.136 hybrid contribution -0.721 -0.224 0.836 1.127 sum 4.159 13.856 -20.635 25.201 Atomic orbital electron populations 1.21857 0.92681 1.02926 1.02953 1.18516 0.96324 0.95267 0.90932 1.21845 1.01816 0.93780 1.02919 1.22632 0.96745 0.93936 0.94737 1.20811 1.02150 1.02502 0.97042 1.14729 0.84484 0.78571 0.80481 1.90858 1.19247 1.47825 1.82355 1.46133 1.18292 1.57599 1.13890 1.21829 0.99738 0.91862 0.82895 0.88834 1.22812 1.01590 0.94485 0.98427 1.22471 1.00320 0.98312 0.93764 1.22158 0.99085 0.93537 0.96813 0.90631 1.20696 0.94760 0.91872 0.89442 1.42342 1.59158 1.31704 1.04387 1.19195 1.25142 1.09328 0.83303 0.91303 1.24737 1.00565 0.98128 0.97688 1.69647 1.37184 1.18237 1.33272 0.86266 0.77447 0.77049 0.85407 1.21326 1.21721 1.21289 1.22443 0.99535 0.98463 0.95653 0.91862 0.91141 0.91890 0.88150 0.91931 0.91109 0.91907 0.76196 0.91405 0.91297 0.91092 0.90801 0.96209 0.96545 0.78271 0.93510 0.90301 0.91296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.70 9.15 37.16 0.34 -0.36 16 2 C 0.01 0.04 3.30 -93.41 -0.31 -0.26 16 3 C -0.15 -0.71 9.15 37.16 0.34 -0.37 16 4 C -0.08 -0.74 12.56 -37.12 -0.47 -1.21 16 5 C -0.22 -2.60 13.61 -38.84 -0.53 -3.13 16 6 C 0.63 8.47 7.65 -14.33 -0.11 8.36 16 7 O -0.53 -8.95 16.74 5.27 0.09 -8.86 16 8 N -0.71 -7.95 5.03 -55.15 -0.28 -8.22 16 9 C 0.14 1.73 3.24 -66.81 -0.22 1.52 16 10 H 0.09 1.25 7.57 -51.93 -0.39 0.86 16 11 C -0.13 -1.78 6.53 -25.07 -0.16 -1.95 16 12 C -0.11 -1.70 6.19 -24.74 -0.15 -1.85 16 13 C -0.10 -1.50 2.89 -88.96 -0.26 -1.76 16 14 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 15 C 0.16 3.17 5.54 -4.04 -0.02 3.15 16 16 N -0.73 -18.54 5.49 -59.91 -0.33 -18.87 16 17 C -0.24 -6.73 9.99 -15.06 -0.15 -6.88 16 18 H 0.07 1.88 7.83 -52.48 -0.41 1.47 16 19 C -0.02 -0.45 5.50 -17.43 -0.10 -0.54 16 20 N -0.93 -28.42 13.06 55.49 0.72 -27.70 16 21 Si 0.91 22.57 29.55 -169.99 -5.02 17.55 16 22 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 23 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 24 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 25 C -0.12 -1.50 6.14 -25.61 -0.16 -1.65 16 26 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 27 H 0.07 0.22 8.14 -51.93 -0.42 -0.20 16 28 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.10 0.48 8.14 -51.93 -0.42 0.05 16 30 H 0.06 0.33 8.14 -51.92 -0.42 -0.09 16 31 H 0.07 0.22 8.14 -51.93 -0.42 -0.20 16 32 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 33 H 0.40 3.58 8.29 -40.82 -0.34 3.24 16 34 H 0.07 0.88 8.05 -51.93 -0.42 0.46 16 35 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.07 1.13 7.97 -51.93 -0.41 0.72 16 37 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 38 H 0.02 0.40 8.02 -51.93 -0.42 -0.01 16 39 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 40 H 0.38 10.17 7.64 -40.82 -0.31 9.86 16 41 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 42 H 0.08 0.95 7.84 -51.93 -0.41 0.54 16 43 H 0.07 0.73 7.62 -51.93 -0.40 0.34 16 LS Contribution 361.31 15.07 5.44 5.44 Total: -1.00 -33.14 361.31 -8.61 -41.75 By element: Atomic # 1 Polarization: 13.12 SS G_CDS: -7.29 Total: 5.83 kcal Atomic # 6 Polarization: -4.98 SS G_CDS: -1.95 Total: -6.93 kcal Atomic # 7 Polarization: -54.91 SS G_CDS: 0.12 Total: -54.79 kcal Atomic # 8 Polarization: -8.95 SS G_CDS: 0.09 Total: -8.86 kcal Atomic # 14 Polarization: 22.57 SS G_CDS: -5.02 Total: 17.55 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -33.14 -8.61 -41.75 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717871103.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.259 kcal (2) G-P(sol) polarization free energy of solvation -33.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.750 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds