Wall clock time and date at job start Tue Mar 31 2020 00:49:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.46768 * 2 1 4 4 C 1.47200 * 109.47438 * 120.00039 * 2 1 3 5 5 C 2.64598 * 109.47211 * 120.00073 * 2 1 3 6 6 C 4.07799 * 109.47186 * 119.99983 * 2 1 3 7 7 O 1.21613 * 120.00075 * 127.38433 * 6 5 4 8 8 N 1.34777 * 119.99674 * 307.37874 * 6 5 4 9 9 C 1.46499 * 119.99665 * 179.72650 * 8 6 5 10 10 H 1.09000 * 110.02169 * 33.88698 * 9 8 6 11 11 C 1.54272 * 110.03485 * 272.44411 * 9 8 6 12 12 C 1.54889 * 104.19819 * 217.10629 * 11 9 8 13 13 C 1.54887 * 102.74865 * 37.94293 * 12 11 9 14 14 H 1.08996 * 110.49072 * 80.73104 * 13 12 11 15 15 C 1.52999 * 110.48817 * 203.38244 * 13 12 11 16 16 N 1.46498 * 109.46734 * 289.77154 * 15 13 12 17 17 C 1.36935 * 120.00198 * 179.97438 * 16 15 13 18 18 H 1.08008 * 119.99895 * 0.02562 * 17 16 15 19 19 C 1.38807 * 120.00401 * 180.02562 * 17 16 15 20 20 N 1.31621 * 120.00320 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 120.00258 * 180.02562 * 19 17 16 22 22 H 1.48510 * 109.47081 * 60.00048 * 21 19 17 23 23 H 1.48498 * 109.47540 * 179.97438 * 21 19 17 24 24 H 1.48504 * 109.47309 * 300.00171 * 21 19 17 25 25 C 1.53878 * 110.03156 * 155.27874 * 9 8 6 26 26 H 1.09001 * 109.47054 * 300.00089 * 1 2 3 27 27 H 1.09003 * 109.47160 * 59.99924 * 1 2 3 28 28 H 1.09000 * 109.47527 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47054 * 239.99911 * 2 1 3 30 30 H 1.09008 * 109.46412 * 180.02562 * 3 2 1 31 31 H 1.08995 * 109.47475 * 299.99715 * 3 2 1 32 32 H 1.09001 * 109.47371 * 60.00682 * 3 2 1 33 33 H 0.97001 * 120.00485 * 0.02562 * 8 6 5 34 34 H 1.09006 * 110.48347 * 335.78754 * 11 9 8 35 35 H 1.09003 * 110.48577 * 98.42799 * 11 9 8 36 36 H 1.09000 * 110.75187 * 279.62806 * 12 11 9 37 37 H 1.09001 * 110.91044 * 156.33070 * 12 11 9 38 38 H 1.08994 * 109.47221 * 49.76906 * 15 13 12 39 39 H 1.08999 * 109.47211 * 169.77545 * 15 13 12 40 40 H 0.97001 * 120.00078 * 0.02562 * 16 15 13 41 41 H 0.97000 * 120.00565 * 180.02562 * 20 19 17 42 42 H 1.09003 * 110.03007 * 238.56318 * 25 9 8 43 43 H 1.08995 * 110.02953 * 359.95428 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0207 -0.6939 1.2019 5 6 2.4120 -1.2473 2.1604 6 6 2.8894 -1.9224 3.3297 7 8 4.0087 -2.3977 3.3430 8 7 2.0981 -2.0308 4.4153 9 6 2.5843 -2.7266 5.6094 10 1 3.6563 -2.5662 5.7242 11 6 2.2833 -4.2357 5.5009 12 6 1.9163 -4.6548 6.9462 13 6 1.1108 -3.4362 7.4613 14 1 0.0816 -3.4811 7.1053 15 6 1.1481 -3.3769 8.9897 16 7 0.3511 -4.4757 9.5405 17 6 0.2377 -4.6264 10.8968 18 1 0.7356 -3.9349 11.5605 19 6 -0.5171 -5.6679 11.4188 20 7 -1.1235 -6.5109 10.6101 21 14 -0.6723 -5.8730 13.2690 22 1 -1.2902 -4.6549 13.8520 23 1 -1.5259 -7.0512 13.5666 24 1 0.6752 -6.0756 13.8594 25 6 1.8388 -2.2182 6.8558 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 1.8933 -0.5139 -0.8900 30 1 3.1300 1.4425 -0.0005 31 1 1.6766 1.9564 -0.8899 32 1 1.6767 1.9564 0.8900 33 1 1.2052 -1.6519 4.4046 34 1 1.4434 -4.4098 4.8283 35 1 3.1655 -4.7771 5.1592 36 1 2.8149 -4.8048 7.5447 37 1 1.2995 -5.5534 6.9460 38 1 2.1789 -3.4687 9.3318 39 1 0.7368 -2.4253 9.3265 40 1 -0.0958 -5.0970 8.9445 41 1 -1.6512 -7.2385 10.9748 42 1 2.5491 -1.8119 7.5759 43 1 1.1159 -1.4532 6.5724 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717871103.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:49:33 Heat of formation + Delta-G solvation = -21.268362 kcal Electronic energy + Delta-G solvation = -20486.688375 eV Core-core repulsion = 17338.554951 eV Total energy + Delta-G solvation = -3148.133423 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.12994 -39.24606 -37.33193 -36.49153 -34.88514 -33.23717 -32.61483 -30.17062 -29.13968 -28.05248 -26.39335 -24.96407 -23.90730 -22.64689 -21.47098 -21.01421 -19.78340 -19.06049 -17.66721 -17.02130 -16.75768 -16.39489 -15.88561 -15.87294 -15.53964 -15.19321 -15.07607 -14.55382 -14.44527 -14.34746 -13.60841 -13.18845 -13.09221 -13.02980 -12.92554 -12.76404 -12.49633 -12.41335 -12.31712 -12.21360 -12.08413 -11.84314 -11.64215 -11.56294 -11.55174 -11.44727 -11.34450 -11.18663 -10.89150 -10.20757 -8.96972 -7.93785 -5.21984 0.45878 1.22795 1.47538 1.50669 1.56744 2.01345 2.42239 2.57165 3.14285 3.39316 3.55118 3.59223 3.87648 4.04305 4.12101 4.17380 4.17531 4.38672 4.47711 4.48750 4.51945 4.60654 4.66140 4.76896 4.79888 4.84538 4.93753 4.95374 5.04516 5.06113 5.12028 5.13801 5.22094 5.32686 5.35757 5.36670 5.46605 5.49775 5.56263 6.17159 6.28831 6.35909 7.00634 7.35035 8.12869 8.35652 9.29640 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.034567 B = 0.002459 C = 0.002398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 809.824755 B =11381.890434 C =11671.715714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.002 3.998 3 C -0.145 4.145 4 C -0.043 4.043 5 C -0.273 4.273 6 C 0.633 3.367 7 O -0.571 6.571 8 N -0.694 5.694 9 C 0.147 3.853 10 H 0.086 0.914 11 C -0.125 4.125 12 C -0.109 4.109 13 C -0.089 4.089 14 H 0.073 0.927 15 C 0.157 3.843 16 N -0.745 5.745 17 C -0.245 4.245 18 H 0.075 0.925 19 C -0.078 4.078 20 N -0.970 5.970 21 Si 0.974 3.026 22 H -0.277 1.277 23 H -0.296 1.296 24 H -0.279 1.279 25 C -0.109 4.109 26 H 0.059 0.941 27 H 0.091 0.909 28 H 0.057 0.943 29 H 0.118 0.882 30 H 0.055 0.945 31 H 0.093 0.907 32 H 0.058 0.942 33 H 0.416 0.584 34 H 0.073 0.927 35 H 0.064 0.936 36 H 0.062 0.938 37 H 0.054 0.946 38 H 0.020 0.980 39 H 0.022 0.978 40 H 0.374 0.626 41 H 0.251 0.749 42 H 0.085 0.915 43 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.675 16.367 -22.742 28.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.015 4.015 3 C -0.202 4.202 4 C -0.045 4.045 5 C -0.276 4.276 6 C 0.420 3.580 7 O -0.452 6.452 8 N -0.345 5.345 9 C 0.043 3.957 10 H 0.104 0.896 11 C -0.164 4.164 12 C -0.147 4.147 13 C -0.108 4.108 14 H 0.091 0.909 15 C 0.031 3.969 16 N -0.387 5.387 17 C -0.377 4.377 18 H 0.093 0.907 19 C -0.270 4.270 20 N -0.621 5.621 21 Si 0.803 3.197 22 H -0.203 1.203 23 H -0.222 1.222 24 H -0.205 1.205 25 C -0.148 4.148 26 H 0.078 0.922 27 H 0.110 0.890 28 H 0.076 0.924 29 H 0.136 0.864 30 H 0.074 0.926 31 H 0.112 0.888 32 H 0.077 0.923 33 H 0.254 0.746 34 H 0.091 0.909 35 H 0.083 0.917 36 H 0.080 0.920 37 H 0.073 0.927 38 H 0.038 0.962 39 H 0.040 0.960 40 H 0.206 0.794 41 H 0.060 0.940 42 H 0.104 0.896 43 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 4.496 16.097 -22.504 28.032 hybrid contribution -0.604 -0.765 1.068 1.446 sum 3.892 15.332 -21.436 26.641 Atomic orbital electron populations 1.21868 0.91482 1.02937 1.03926 1.18869 0.97230 0.95710 0.89731 1.21860 1.01420 0.92994 1.03926 1.23477 0.94707 0.92027 0.94337 1.20652 1.04477 1.04562 0.97939 1.14921 0.83927 0.77945 0.81158 1.90825 1.21142 1.49963 1.83249 1.45982 1.18657 1.56825 1.13021 1.21653 0.99420 0.91248 0.83394 0.89584 1.22710 1.01570 0.95170 0.96939 1.22384 0.99530 0.97632 0.95118 1.22030 0.99494 0.95267 0.93970 0.90854 1.20877 0.93656 0.90195 0.92151 1.42564 1.59710 1.32876 1.03579 1.19619 1.24280 1.09014 0.84817 0.90738 1.25576 1.00986 0.98279 1.02158 1.69808 1.38337 1.18896 1.35040 0.85208 0.77460 0.76886 0.80180 1.20312 1.22181 1.20493 1.22333 0.99804 0.97335 0.95293 0.92154 0.88978 0.92377 0.86420 0.92602 0.88789 0.92279 0.74589 0.90856 0.91696 0.91962 0.92744 0.96227 0.96023 0.79403 0.94040 0.89605 0.88905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.98 9.15 71.98 0.66 -0.32 16 2 C 0.00 0.02 3.30 -12.60 -0.04 -0.02 16 3 C -0.14 -1.03 9.15 71.98 0.66 -0.37 16 4 C -0.04 -0.75 12.56 31.13 0.39 -0.36 16 5 C -0.27 -6.24 13.61 30.02 0.41 -5.83 16 6 C 0.63 16.87 7.65 85.49 0.65 17.53 16 7 O -0.57 -19.78 16.74 -4.07 -0.07 -19.85 16 8 N -0.69 -14.81 5.03 -446.66 -2.25 -17.06 16 9 C 0.15 3.48 3.24 45.72 0.15 3.63 16 10 H 0.09 2.25 7.57 -2.39 -0.02 2.23 16 11 C -0.13 -3.28 6.53 31.67 0.21 -3.07 16 12 C -0.11 -3.35 6.19 31.88 0.20 -3.15 16 13 C -0.09 -2.68 2.89 -9.72 -0.03 -2.71 16 14 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 15 C 0.16 6.16 5.54 86.38 0.48 6.64 16 16 N -0.74 -37.99 5.49 -343.46 -1.89 -39.87 16 17 C -0.25 -13.85 9.99 84.03 0.84 -13.01 16 18 H 0.07 4.03 7.83 -2.91 -0.02 4.01 16 19 C -0.08 -4.52 5.50 84.86 0.47 -4.05 16 20 N -0.97 -59.87 13.06 21.65 0.28 -59.59 16 21 Si 0.97 46.50 29.55 68.60 2.03 48.52 16 22 H -0.28 -12.68 7.11 99.48 0.71 -11.98 16 23 H -0.30 -14.20 7.11 99.48 0.71 -13.49 16 24 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 25 C -0.11 -2.47 6.14 31.32 0.19 -2.27 16 26 H 0.06 0.45 8.14 -2.39 -0.02 0.44 16 27 H 0.09 0.26 8.14 -2.39 -0.02 0.24 16 28 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16 29 H 0.12 0.76 8.14 -2.39 -0.02 0.74 16 30 H 0.05 0.49 8.14 -2.38 -0.02 0.47 16 31 H 0.09 0.26 8.14 -2.39 -0.02 0.24 16 32 H 0.06 0.47 8.14 -2.39 -0.02 0.46 16 33 H 0.42 6.63 8.29 -92.71 -0.77 5.86 16 34 H 0.07 1.84 8.05 -2.38 -0.02 1.82 16 35 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 36 H 0.06 2.01 7.97 -2.39 -0.02 1.99 16 37 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 38 H 0.02 0.78 8.02 -2.39 -0.02 0.76 16 39 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 40 H 0.37 20.25 7.64 -92.71 -0.71 19.54 16 41 H 0.25 15.03 8.31 -92.71 -0.77 14.26 16 42 H 0.09 1.88 7.84 -2.39 -0.02 1.86 16 43 H 0.09 1.69 7.62 -2.39 -0.02 1.68 16 Total: -1.00 -71.95 361.31 2.87 -69.09 By element: Atomic # 1 Polarization: 26.60 SS G_CDS: -0.47 Total: 26.13 kcal Atomic # 6 Polarization: -12.60 SS G_CDS: 5.23 Total: -7.37 kcal Atomic # 7 Polarization: -112.67 SS G_CDS: -3.85 Total: -116.52 kcal Atomic # 8 Polarization: -19.78 SS G_CDS: -0.07 Total: -19.85 kcal Atomic # 14 Polarization: 46.50 SS G_CDS: 2.03 Total: 48.52 kcal Total: -71.95 2.87 -69.09 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717871103.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.820 kcal (2) G-P(sol) polarization free energy of solvation -71.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.088 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds