Wall clock time and date at job start Tue Mar 31 2020 00:49:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53003 * 109.47543 * 2 1 4 4 C 1.47204 * 109.47127 * 120.00169 * 2 1 3 5 5 C 2.64600 * 109.47130 * 119.99991 * 2 1 3 6 6 C 4.07800 * 109.47003 * 119.99930 * 2 1 3 7 7 O 1.21623 * 119.99738 * 112.65746 * 6 5 4 8 8 N 1.34772 * 120.00276 * 292.65478 * 6 5 4 9 9 C 1.46501 * 119.99892 * 180.02562 * 8 6 5 10 10 H 1.09001 * 110.05492 * 326.41091 * 9 8 6 11 11 C 1.53871 * 110.03656 * 87.83042 * 9 8 6 12 12 C 1.54269 * 106.59813 * 119.28218 * 11 9 8 13 13 C 1.54885 * 104.19677 * 23.61322 * 12 11 9 14 14 H 1.09002 * 110.75709 * 80.37016 * 13 12 11 15 15 C 1.53001 * 110.91553 * 203.66819 * 13 12 11 16 16 N 1.46497 * 109.46919 * 290.95640 * 15 13 12 17 17 C 1.36939 * 119.99984 * 179.97438 * 16 15 13 18 18 H 1.08007 * 120.00143 * 359.97438 * 17 16 15 19 19 C 1.38811 * 120.00330 * 179.97438 * 17 16 15 20 20 N 1.31622 * 120.00102 * 180.02562 * 19 17 16 21 21 Si 1.86792 * 119.99949 * 359.97438 * 19 17 16 22 22 H 1.48500 * 109.47343 * 89.99982 * 21 19 17 23 23 H 1.48499 * 109.47584 * 210.00307 * 21 19 17 24 24 H 1.48506 * 109.47180 * 330.00424 * 21 19 17 25 25 C 1.54271 * 110.03085 * 204.99742 * 9 8 6 26 26 H 1.09001 * 109.46957 * 300.00199 * 1 2 3 27 27 H 1.09000 * 109.47259 * 59.99624 * 1 2 3 28 28 H 1.09003 * 109.47844 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46957 * 239.99801 * 2 1 3 30 30 H 1.08990 * 109.47164 * 180.02562 * 3 2 1 31 31 H 1.08998 * 109.46441 * 300.00245 * 3 2 1 32 32 H 1.08995 * 109.46939 * 59.99546 * 3 2 1 33 33 H 0.96996 * 120.00043 * 359.97438 * 8 6 5 34 34 H 1.09000 * 110.03307 * 238.56970 * 11 9 8 35 35 H 1.09002 * 110.03084 * 0.02562 * 11 9 8 36 36 H 1.09002 * 110.48538 * 264.93327 * 12 11 9 37 37 H 1.08996 * 110.48433 * 142.29362 * 12 11 9 38 38 H 1.09002 * 109.46817 * 50.94835 * 15 13 12 39 39 H 1.08995 * 109.47253 * 170.95439 * 15 13 12 40 40 H 0.96997 * 120.00565 * 359.97438 * 16 15 13 41 41 H 0.96996 * 120.00136 * 179.97438 * 20 19 17 42 42 H 1.09002 * 110.48367 * 98.42685 * 25 9 8 43 43 H 1.09002 * 110.59675 * 335.83799 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0206 -0.6940 1.2019 5 6 2.4119 -1.2473 2.1605 6 6 2.8892 -1.9224 3.3297 7 8 3.8813 -2.6228 3.2651 8 7 2.2390 -1.7815 4.5018 9 6 2.7276 -2.4716 5.6981 10 1 3.1679 -3.4301 5.4230 11 6 3.7703 -1.6005 6.4204 12 6 3.2089 -1.3184 7.8293 13 6 2.2192 -2.4822 8.0840 14 1 2.7514 -3.3800 8.3985 15 6 1.1665 -2.0869 9.1215 16 7 1.8008 -1.9567 10.4355 17 6 1.0504 -1.6076 11.5265 18 1 -0.0091 -1.4278 11.4181 19 6 1.6513 -1.4847 12.7718 20 7 0.9299 -1.1496 13.8204 21 14 3.4835 -1.7962 12.9595 22 1 4.2253 -0.5266 12.7522 23 1 3.7604 -2.3142 14.3234 24 1 3.9215 -2.7955 11.9521 25 6 1.5690 -2.6885 6.6934 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3635 -1.0276 0.0005 29 1 1.8932 -0.5139 -0.8900 30 1 3.1299 1.4424 -0.0005 31 1 1.6766 1.9562 -0.8900 32 1 1.6767 1.9563 0.8899 33 1 1.4480 -1.2225 4.5535 34 1 4.7166 -2.1362 6.4958 35 1 3.9125 -0.6640 5.8811 36 1 2.6860 -0.3621 7.8471 37 1 4.0099 -1.3300 8.5684 38 1 0.7175 -1.1347 8.8388 39 1 0.3937 -2.8543 9.1655 40 1 2.7524 -2.1177 10.5329 41 1 1.3497 -1.0641 14.6907 42 1 1.1733 -3.7001 6.6035 43 1 0.7797 -1.9549 6.5287 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717871104.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:49:37 Heat of formation + Delta-G solvation = 3.366982 kcal Electronic energy + Delta-G solvation = -20578.909218 eV Core-core repulsion = 17431.844063 eV Total energy + Delta-G solvation = -3147.065155 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.14165 -38.13784 -36.82070 -35.01945 -33.55593 -32.24257 -31.24605 -29.07452 -28.11894 -27.72722 -24.96540 -23.97484 -22.05501 -21.84197 -20.52332 -19.72753 -18.82025 -17.54661 -16.60718 -16.42304 -15.74975 -15.22337 -14.94917 -14.70395 -14.45004 -14.00172 -13.89371 -13.45644 -13.14346 -12.78144 -12.74115 -12.54044 -12.22349 -12.10287 -11.96584 -11.92680 -11.79043 -11.37649 -10.92865 -10.89270 -10.71663 -10.63634 -10.51598 -10.38638 -10.36129 -10.35282 -10.04698 -9.58005 -9.26424 -8.88065 -7.21237 -5.75948 -3.10998 1.30590 1.99426 2.85184 3.28368 3.38421 3.41395 3.46263 3.84253 4.42329 4.52375 4.57131 4.60160 4.63143 4.67737 4.92974 5.02176 5.08724 5.26751 5.29219 5.31796 5.44337 5.47973 5.51471 5.53881 5.58584 5.66975 5.67690 5.71939 5.80582 5.88749 5.97690 6.02882 6.17823 6.31302 6.43128 6.45750 6.69472 6.81323 6.91368 7.22189 7.90750 8.00681 8.43416 9.22973 9.95479 10.15657 11.42598 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.030102 B = 0.002677 C = 0.002592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 929.945309 B =10456.043113 C =10798.652333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.007 3.993 3 C -0.147 4.147 4 C -0.076 4.076 5 C -0.224 4.224 6 C 0.632 3.368 7 O -0.526 6.526 8 N -0.708 5.708 9 C 0.141 3.859 10 H 0.094 0.906 11 C -0.135 4.135 12 C -0.115 4.115 13 C -0.101 4.101 14 H 0.079 0.921 15 C 0.166 3.834 16 N -0.756 5.756 17 C -0.243 4.243 18 H 0.089 0.911 19 C 0.003 3.997 20 N -0.935 5.935 21 Si 0.884 3.116 22 H -0.284 1.284 23 H -0.291 1.291 24 H -0.277 1.277 25 C -0.120 4.120 26 H 0.063 0.937 27 H 0.070 0.930 28 H 0.061 0.939 29 H 0.100 0.900 30 H 0.062 0.938 31 H 0.070 0.930 32 H 0.063 0.937 33 H 0.404 0.596 34 H 0.070 0.930 35 H 0.066 0.934 36 H 0.070 0.930 37 H 0.067 0.933 38 H 0.027 0.973 39 H 0.026 0.974 40 H 0.361 0.639 41 H 0.259 0.741 42 H 0.074 0.926 43 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.679 2.384 -28.683 28.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.011 4.011 3 C -0.204 4.204 4 C -0.078 4.078 5 C -0.227 4.227 6 C 0.418 3.582 7 O -0.403 6.403 8 N -0.359 5.359 9 C 0.037 3.963 10 H 0.112 0.888 11 C -0.173 4.173 12 C -0.153 4.153 13 C -0.120 4.120 14 H 0.097 0.903 15 C 0.039 3.961 16 N -0.401 5.401 17 C -0.373 4.373 18 H 0.107 0.893 19 C -0.193 4.193 20 N -0.583 5.583 21 Si 0.715 3.285 22 H -0.211 1.211 23 H -0.217 1.217 24 H -0.203 1.203 25 C -0.159 4.159 26 H 0.082 0.918 27 H 0.089 0.911 28 H 0.081 0.919 29 H 0.118 0.882 30 H 0.081 0.919 31 H 0.089 0.911 32 H 0.082 0.918 33 H 0.239 0.761 34 H 0.089 0.911 35 H 0.085 0.915 36 H 0.089 0.911 37 H 0.086 0.914 38 H 0.045 0.955 39 H 0.044 0.956 40 H 0.194 0.806 41 H 0.069 0.931 42 H 0.093 0.907 43 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 1.195 1.926 -28.550 28.640 hybrid contribution 0.954 0.068 0.346 1.017 sum 2.149 1.994 -28.205 28.357 Atomic orbital electron populations 1.21853 0.92654 1.02871 1.03017 1.18524 0.96338 0.95298 0.90907 1.21845 1.01817 0.93732 1.02998 1.22645 0.95944 0.94217 0.95028 1.20778 1.02673 1.02254 0.96965 1.14723 0.82804 0.80010 0.80655 1.90862 1.25182 1.39013 1.85250 1.46091 1.31140 1.50294 1.08379 1.21804 0.95105 0.96163 0.83256 0.88780 1.22606 0.98454 0.99822 0.96456 1.22384 0.98827 0.98894 0.95157 1.22326 0.97001 0.98716 0.93935 0.90286 1.20603 0.93244 0.97870 0.84379 1.42697 1.07577 1.85306 1.04521 1.19066 0.93843 1.38634 0.85742 0.89281 1.24678 0.97399 1.01693 0.95530 1.69703 1.34726 1.54621 0.99292 0.86543 0.86937 0.78072 0.76976 1.21082 1.21747 1.20288 1.22622 0.96792 1.02490 0.93969 0.91816 0.91106 0.91947 0.88182 0.91936 0.91078 0.91835 0.76121 0.91146 0.91543 0.91094 0.91436 0.95502 0.95593 0.80638 0.93087 0.90686 0.90598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.65 9.15 37.15 0.34 -0.31 16 2 C 0.01 0.04 3.30 -93.41 -0.31 -0.27 16 3 C -0.15 -0.69 9.15 37.16 0.34 -0.35 16 4 C -0.08 -0.69 12.56 -37.12 -0.47 -1.16 16 5 C -0.22 -2.53 13.61 -38.84 -0.53 -3.06 16 6 C 0.63 8.15 7.65 -14.34 -0.11 8.04 16 7 O -0.53 -8.68 16.74 5.26 0.09 -8.59 16 8 N -0.71 -7.50 4.97 -55.15 -0.27 -7.77 16 9 C 0.14 1.62 3.25 -66.81 -0.22 1.40 16 10 H 0.09 1.18 7.56 -51.93 -0.39 0.79 16 11 C -0.13 -1.66 6.59 -25.61 -0.17 -1.82 16 12 C -0.11 -1.60 6.11 -25.07 -0.15 -1.75 16 13 C -0.10 -1.46 2.92 -88.63 -0.26 -1.71 16 14 H 0.08 1.18 8.14 -51.93 -0.42 0.75 16 15 C 0.17 3.10 5.70 -4.04 -0.02 3.08 16 16 N -0.76 -17.87 5.29 -59.91 -0.32 -18.19 16 17 C -0.24 -6.91 10.47 -15.06 -0.16 -7.07 16 18 H 0.09 2.70 8.06 -52.48 -0.42 2.28 16 19 C 0.00 0.08 5.50 -17.43 -0.10 -0.02 16 20 N -0.94 -29.57 13.97 55.49 0.78 -28.79 16 21 Si 0.88 22.27 27.73 -169.99 -4.71 17.55 16 22 H -0.28 -7.09 7.11 56.52 0.40 -6.69 16 23 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 24 H -0.28 -6.55 6.52 56.52 0.37 -6.18 16 25 C -0.12 -1.36 5.97 -25.07 -0.15 -1.51 16 26 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 27 H 0.07 0.20 8.14 -51.93 -0.42 -0.22 16 28 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 29 H 0.10 0.45 8.14 -51.93 -0.42 0.02 16 30 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 31 H 0.07 0.22 8.14 -51.93 -0.42 -0.21 16 32 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 33 H 0.40 3.34 8.33 -40.82 -0.34 3.00 16 34 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.07 0.81 7.92 -51.93 -0.41 0.40 16 36 H 0.07 1.01 7.99 -51.93 -0.41 0.60 16 37 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 38 H 0.03 0.51 8.05 -51.93 -0.42 0.09 16 39 H 0.03 0.50 8.14 -51.93 -0.42 0.07 16 40 H 0.36 8.35 5.47 -40.82 -0.22 8.13 16 41 H 0.26 7.79 8.31 -40.82 -0.34 7.45 16 42 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 43 H 0.08 0.78 7.65 -51.93 -0.40 0.39 16 LS Contribution 358.40 15.07 5.40 5.40 Total: -1.00 -34.04 358.40 -8.26 -42.30 By element: Atomic # 1 Polarization: 11.86 SS G_CDS: -7.26 Total: 4.60 kcal Atomic # 6 Polarization: -4.55 SS G_CDS: -1.96 Total: -6.51 kcal Atomic # 7 Polarization: -54.93 SS G_CDS: 0.18 Total: -54.75 kcal Atomic # 8 Polarization: -8.68 SS G_CDS: 0.09 Total: -8.59 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -4.71 Total: 17.55 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -34.04 -8.26 -42.30 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717871104.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.665 kcal (2) G-P(sol) polarization free energy of solvation -34.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.298 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds