Wall clock time and date at job start Tue Mar 31 2020 00:49:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53003 * 109.47543 * 2 1 4 4 C 1.47204 * 109.47127 * 120.00169 * 2 1 3 5 5 C 2.64600 * 109.47130 * 119.99991 * 2 1 3 6 6 C 4.07800 * 109.47003 * 119.99930 * 2 1 3 7 7 O 1.21623 * 119.99738 * 112.65746 * 6 5 4 8 8 N 1.34772 * 120.00276 * 292.65478 * 6 5 4 9 9 C 1.46501 * 119.99892 * 180.02562 * 8 6 5 10 10 H 1.09001 * 110.05492 * 326.41091 * 9 8 6 11 11 C 1.53871 * 110.03656 * 87.83042 * 9 8 6 12 12 C 1.54269 * 106.59813 * 119.28218 * 11 9 8 13 13 C 1.54885 * 104.19677 * 23.61322 * 12 11 9 14 14 H 1.09002 * 110.75709 * 80.37016 * 13 12 11 15 15 C 1.53001 * 110.91553 * 203.66819 * 13 12 11 16 16 N 1.46497 * 109.46919 * 290.95640 * 15 13 12 17 17 C 1.36939 * 119.99984 * 179.97438 * 16 15 13 18 18 H 1.08007 * 120.00143 * 359.97438 * 17 16 15 19 19 C 1.38811 * 120.00330 * 179.97438 * 17 16 15 20 20 N 1.31622 * 120.00102 * 180.02562 * 19 17 16 21 21 Si 1.86792 * 119.99949 * 359.97438 * 19 17 16 22 22 H 1.48500 * 109.47343 * 89.99982 * 21 19 17 23 23 H 1.48499 * 109.47584 * 210.00307 * 21 19 17 24 24 H 1.48506 * 109.47180 * 330.00424 * 21 19 17 25 25 C 1.54271 * 110.03085 * 204.99742 * 9 8 6 26 26 H 1.09001 * 109.46957 * 300.00199 * 1 2 3 27 27 H 1.09000 * 109.47259 * 59.99624 * 1 2 3 28 28 H 1.09003 * 109.47844 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46957 * 239.99801 * 2 1 3 30 30 H 1.08990 * 109.47164 * 180.02562 * 3 2 1 31 31 H 1.08998 * 109.46441 * 300.00245 * 3 2 1 32 32 H 1.08995 * 109.46939 * 59.99546 * 3 2 1 33 33 H 0.96996 * 120.00043 * 359.97438 * 8 6 5 34 34 H 1.09000 * 110.03307 * 238.56970 * 11 9 8 35 35 H 1.09002 * 110.03084 * 0.02562 * 11 9 8 36 36 H 1.09002 * 110.48538 * 264.93327 * 12 11 9 37 37 H 1.08996 * 110.48433 * 142.29362 * 12 11 9 38 38 H 1.09002 * 109.46817 * 50.94835 * 15 13 12 39 39 H 1.08995 * 109.47253 * 170.95439 * 15 13 12 40 40 H 0.96997 * 120.00565 * 359.97438 * 16 15 13 41 41 H 0.96996 * 120.00136 * 179.97438 * 20 19 17 42 42 H 1.09002 * 110.48367 * 98.42685 * 25 9 8 43 43 H 1.09002 * 110.59675 * 335.83799 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0206 -0.6940 1.2019 5 6 2.4119 -1.2473 2.1605 6 6 2.8892 -1.9224 3.3297 7 8 3.8813 -2.6228 3.2651 8 7 2.2390 -1.7815 4.5018 9 6 2.7276 -2.4716 5.6981 10 1 3.1679 -3.4301 5.4230 11 6 3.7703 -1.6005 6.4204 12 6 3.2089 -1.3184 7.8293 13 6 2.2192 -2.4822 8.0840 14 1 2.7514 -3.3800 8.3985 15 6 1.1665 -2.0869 9.1215 16 7 1.8008 -1.9567 10.4355 17 6 1.0504 -1.6076 11.5265 18 1 -0.0091 -1.4278 11.4181 19 6 1.6513 -1.4847 12.7718 20 7 0.9299 -1.1496 13.8204 21 14 3.4835 -1.7962 12.9595 22 1 4.2253 -0.5266 12.7522 23 1 3.7604 -2.3142 14.3234 24 1 3.9215 -2.7955 11.9521 25 6 1.5690 -2.6885 6.6934 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3635 -1.0276 0.0005 29 1 1.8932 -0.5139 -0.8900 30 1 3.1299 1.4424 -0.0005 31 1 1.6766 1.9562 -0.8900 32 1 1.6767 1.9563 0.8899 33 1 1.4480 -1.2225 4.5535 34 1 4.7166 -2.1362 6.4958 35 1 3.9125 -0.6640 5.8811 36 1 2.6860 -0.3621 7.8471 37 1 4.0099 -1.3300 8.5684 38 1 0.7175 -1.1347 8.8388 39 1 0.3937 -2.8543 9.1655 40 1 2.7524 -2.1177 10.5329 41 1 1.3497 -1.0641 14.6907 42 1 1.1733 -3.7001 6.6035 43 1 0.7797 -1.9549 6.5287 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717871104.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:49:36 Heat of formation + Delta-G solvation = -18.633019 kcal Electronic energy + Delta-G solvation = -20579.863210 eV Core-core repulsion = 17431.844063 eV Total energy + Delta-G solvation = -3148.019146 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.14171 -39.27338 -37.33992 -36.63189 -34.89497 -33.42689 -32.77853 -30.39746 -29.24997 -28.06122 -26.41871 -24.93988 -23.70481 -22.68245 -21.60503 -20.89712 -19.82825 -19.45251 -17.64476 -17.02620 -16.87086 -16.48374 -16.05299 -16.00025 -15.51799 -15.28033 -14.94808 -14.66346 -14.38083 -14.25031 -13.78369 -13.55373 -13.10587 -13.02559 -12.95311 -12.80985 -12.68534 -12.42100 -12.32990 -12.21017 -11.98395 -11.84461 -11.66674 -11.58469 -11.53541 -11.47999 -11.36246 -11.18405 -10.95398 -10.22644 -9.27549 -8.02584 -5.35255 0.44893 1.22264 1.37918 1.40847 1.48311 2.00451 2.41299 2.48511 3.12764 3.28969 3.47886 3.54155 3.80688 3.97331 4.03430 4.12117 4.16933 4.35601 4.44890 4.46916 4.50655 4.57189 4.61339 4.70392 4.79224 4.89360 4.92749 4.94727 4.98637 5.08094 5.11475 5.11720 5.18365 5.30990 5.32229 5.34977 5.47814 5.52071 5.76588 6.16524 6.21997 6.34789 6.99630 7.09054 7.86407 8.04952 9.19072 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.030102 B = 0.002677 C = 0.002592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 929.945309 B =10456.043113 C =10798.652333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.002 3.998 3 C -0.145 4.145 4 C -0.043 4.043 5 C -0.274 4.274 6 C 0.633 3.367 7 O -0.571 6.571 8 N -0.694 5.694 9 C 0.145 3.855 10 H 0.087 0.913 11 C -0.127 4.127 12 C -0.113 4.113 13 C -0.095 4.095 14 H 0.079 0.921 15 C 0.163 3.837 16 N -0.758 5.758 17 C -0.233 4.233 18 H 0.057 0.943 19 C -0.067 4.067 20 N -0.985 5.985 21 Si 0.954 3.046 22 H -0.278 1.278 23 H -0.296 1.296 24 H -0.251 1.251 25 C -0.108 4.108 26 H 0.059 0.941 27 H 0.091 0.909 28 H 0.058 0.942 29 H 0.118 0.882 30 H 0.055 0.945 31 H 0.093 0.907 32 H 0.058 0.942 33 H 0.416 0.584 34 H 0.069 0.931 35 H 0.067 0.933 36 H 0.067 0.933 37 H 0.058 0.942 38 H 0.028 0.972 39 H 0.025 0.975 40 H 0.366 0.634 41 H 0.258 0.742 42 H 0.088 0.912 43 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.158 2.584 -31.249 31.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.015 4.015 3 C -0.203 4.203 4 C -0.046 4.046 5 C -0.277 4.277 6 C 0.421 3.579 7 O -0.452 6.452 8 N -0.345 5.345 9 C 0.041 3.959 10 H 0.105 0.895 11 C -0.166 4.166 12 C -0.150 4.150 13 C -0.114 4.114 14 H 0.097 0.903 15 C 0.037 3.963 16 N -0.404 5.404 17 C -0.364 4.364 18 H 0.075 0.925 19 C -0.258 4.258 20 N -0.636 5.636 21 Si 0.781 3.219 22 H -0.204 1.204 23 H -0.223 1.223 24 H -0.176 1.176 25 C -0.146 4.146 26 H 0.078 0.922 27 H 0.110 0.890 28 H 0.077 0.923 29 H 0.136 0.864 30 H 0.074 0.926 31 H 0.112 0.888 32 H 0.077 0.923 33 H 0.254 0.746 34 H 0.088 0.912 35 H 0.086 0.914 36 H 0.085 0.915 37 H 0.076 0.924 38 H 0.046 0.954 39 H 0.043 0.957 40 H 0.199 0.801 41 H 0.066 0.934 42 H 0.106 0.894 43 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 1.645 2.133 -31.166 31.282 hybrid contribution 0.664 0.071 1.042 1.237 sum 2.310 2.203 -30.124 30.293 Atomic orbital electron populations 1.21863 0.91436 1.02960 1.03922 1.18865 0.97258 0.95637 0.89774 1.21861 1.01409 0.93072 1.03919 1.23476 0.93940 0.92461 0.94682 1.20669 1.04916 1.04231 0.97866 1.14903 0.82189 0.79373 0.81438 1.90828 1.27184 1.41152 1.86004 1.45957 1.31150 1.49812 1.07568 1.21673 0.94969 0.95790 0.83439 0.89502 1.22522 0.98566 1.00018 0.95467 1.22338 0.98385 0.98459 0.95857 1.22207 0.96118 0.98790 0.94254 0.90289 1.20786 0.94381 0.97870 0.83272 1.42730 1.07615 1.84977 1.05085 1.19064 0.92918 1.37074 0.87312 0.92500 1.25519 1.02591 1.02457 0.95215 1.69884 1.37004 1.56796 0.99876 0.85418 0.80716 0.78648 0.77096 1.20388 1.22304 1.17597 1.22534 0.96736 1.03807 0.91569 0.92186 0.88996 0.92283 0.86434 0.92623 0.88828 0.92309 0.74620 0.91218 0.91385 0.91459 0.92353 0.95380 0.95698 0.80123 0.93370 0.89375 0.89205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.89 9.15 71.98 0.66 -0.23 16 2 C 0.00 0.02 3.30 -12.60 -0.04 -0.02 16 3 C -0.15 -1.01 9.15 71.98 0.66 -0.35 16 4 C -0.04 -0.72 12.56 31.13 0.39 -0.33 16 5 C -0.27 -6.00 13.61 30.02 0.41 -5.59 16 6 C 0.63 16.07 7.65 85.49 0.65 16.72 16 7 O -0.57 -18.97 16.74 -4.10 -0.07 -19.04 16 8 N -0.69 -13.78 4.97 -446.66 -2.22 -16.00 16 9 C 0.15 3.12 3.25 45.72 0.15 3.27 16 10 H 0.09 2.07 7.56 -2.39 -0.02 2.05 16 11 C -0.13 -2.93 6.59 31.32 0.21 -2.73 16 12 C -0.11 -2.95 6.11 31.67 0.19 -2.76 16 13 C -0.09 -2.56 2.92 -9.50 -0.03 -2.58 16 14 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 15 C 0.16 5.88 5.70 86.38 0.49 6.37 16 16 N -0.76 -35.15 5.29 -343.45 -1.82 -36.97 16 17 C -0.23 -13.34 10.47 84.03 0.88 -12.46 16 18 H 0.06 3.56 8.06 -2.91 -0.02 3.54 16 19 C -0.07 -3.96 5.50 84.86 0.47 -3.49 16 20 N -0.98 -63.63 13.97 21.65 0.30 -63.33 16 21 Si 0.95 45.82 27.73 68.60 1.90 47.73 16 22 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 23 H -0.30 -14.42 7.11 99.48 0.71 -13.71 16 24 H -0.25 -10.89 6.52 99.48 0.65 -10.24 16 25 C -0.11 -2.19 5.97 31.67 0.19 -2.00 16 26 H 0.06 0.42 8.14 -2.39 -0.02 0.41 16 27 H 0.09 0.21 8.14 -2.39 -0.02 0.19 16 28 H 0.06 0.42 8.14 -2.39 -0.02 0.40 16 29 H 0.12 0.69 8.14 -2.39 -0.02 0.67 16 30 H 0.05 0.48 8.14 -2.39 -0.02 0.46 16 31 H 0.09 0.26 8.14 -2.39 -0.02 0.24 16 32 H 0.06 0.47 8.14 -2.39 -0.02 0.45 16 33 H 0.42 6.13 8.33 -92.71 -0.77 5.36 16 34 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 35 H 0.07 1.56 7.92 -2.39 -0.02 1.54 16 36 H 0.07 1.82 7.99 -2.39 -0.02 1.80 16 37 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 38 H 0.03 1.02 8.05 -2.39 -0.02 1.00 16 39 H 0.02 0.92 8.14 -2.39 -0.02 0.90 16 40 H 0.37 16.22 5.47 -92.71 -0.51 15.71 16 41 H 0.26 15.84 8.31 -92.71 -0.77 15.07 16 42 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 43 H 0.09 1.60 7.65 -2.39 -0.02 1.58 16 Total: -1.00 -74.72 358.40 3.04 -71.68 By element: Atomic # 1 Polarization: 22.46 SS G_CDS: -0.34 Total: 22.12 kcal Atomic # 6 Polarization: -11.47 SS G_CDS: 5.28 Total: -6.19 kcal Atomic # 7 Polarization: -112.56 SS G_CDS: -3.74 Total: -116.30 kcal Atomic # 8 Polarization: -18.97 SS G_CDS: -0.07 Total: -19.04 kcal Atomic # 14 Polarization: 45.82 SS G_CDS: 1.90 Total: 47.73 kcal Total: -74.72 3.04 -71.68 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717871104.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.049 kcal (2) G-P(sol) polarization free energy of solvation -74.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.682 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds