Wall clock time and date at job start Tue Mar 31 2020 01:00:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50699 * 119.99687 * 2 1 4 4 C 1.53005 * 109.47251 * 124.99836 * 3 2 1 5 5 C 1.50701 * 109.47037 * 179.97438 * 4 3 2 6 6 O 1.21281 * 120.00160 * 0.02562 * 5 4 3 7 7 N 1.34777 * 119.99720 * 179.97438 * 5 4 3 8 8 C 1.44510 * 116.65216 * 353.91433 * 7 5 4 9 9 C 1.51609 * 112.73484 * 154.48257 * 8 7 5 10 10 C 1.51328 * 111.98855 * 42.38219 * 9 8 7 11 11 C 1.51915 * 112.94095 * 303.77784 * 10 9 8 12 12 H 1.08997 * 107.47976 * 170.02398 * 11 10 9 13 13 C 1.51318 * 111.44329 * 289.18387 * 11 10 9 14 14 N 1.46827 * 107.26200 * 140.46662 * 13 11 10 15 15 C 1.36938 * 125.38031 * 181.17454 * 14 13 11 16 16 H 1.08006 * 119.99912 * 0.04630 * 15 14 13 17 17 C 1.38806 * 120.00086 * 180.02562 * 15 14 13 18 18 N 1.31613 * 120.00245 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 120.00020 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.47251 * 59.99628 * 19 17 15 21 21 H 1.48496 * 109.47258 * 180.02562 * 19 17 15 22 22 H 1.48506 * 109.47012 * 300.00000 * 19 17 15 23 23 C 1.46902 * 109.24481 * 1.18816 * 14 13 11 24 24 C 1.44114 * 116.64886 * 173.93287 * 7 5 4 25 25 H 1.08999 * 109.49121 * 75.21896 * 24 7 5 26 26 H 1.07993 * 119.99681 * 180.02562 * 1 2 3 27 27 H 1.08000 * 120.00133 * 0.02562 * 1 2 3 28 28 H 1.08000 * 120.00133 * 179.97438 * 2 1 3 29 29 H 1.08995 * 109.47523 * 4.99782 * 3 2 1 30 30 H 1.09005 * 109.46803 * 244.99669 * 3 2 1 31 31 H 1.09005 * 109.46814 * 59.99666 * 4 3 2 32 32 H 1.08991 * 109.47073 * 299.99848 * 4 3 2 33 33 H 1.09003 * 108.82624 * 33.64199 * 8 7 5 34 34 H 1.08993 * 108.74273 * 275.26490 * 8 7 5 35 35 H 1.08991 * 108.96540 * 163.00625 * 9 8 7 36 36 H 1.09005 * 108.96411 * 281.76726 * 9 8 7 37 37 H 1.08997 * 108.68156 * 65.70612 * 10 9 8 38 38 H 1.08999 * 108.68251 * 183.64130 * 10 9 8 39 39 H 1.08994 * 109.84235 * 21.11958 * 13 11 10 40 40 H 1.09001 * 110.17895 * 259.99574 * 13 11 10 41 41 H 0.97003 * 120.00247 * 179.97438 * 18 17 15 42 42 H 1.08998 * 110.08890 * 222.86990 * 23 14 13 43 43 H 1.08998 * 110.08499 * 101.28951 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0350 1.3332 1.1817 5 6 3.7889 2.6381 1.1813 6 8 3.5703 3.4645 0.3209 7 7 4.7053 2.8872 2.1377 8 6 4.8112 1.9161 3.2026 9 6 6.1809 1.9063 3.8525 10 6 6.7123 3.3055 4.0755 11 6 6.7710 4.1271 2.7990 12 1 6.9898 5.1566 3.0820 13 6 7.8608 3.6330 1.8727 14 7 7.3331 3.7001 0.5042 15 6 8.0067 3.3175 -0.6250 16 1 9.0111 2.9278 -0.5486 17 6 7.3985 3.4299 -1.8676 18 7 6.1742 3.9039 -1.9606 19 14 8.3176 2.9086 -3.4080 20 1 8.6710 1.4696 -3.3104 21 1 7.4553 3.1276 -4.5970 22 1 9.5576 3.7149 -3.5412 23 6 5.9684 4.2429 0.5376 24 6 5.4784 4.0948 1.9932 25 1 4.8632 4.9545 2.2586 26 1 -0.5399 -0.9353 0.0004 27 1 -0.5400 0.9353 -0.0004 28 1 1.8501 -0.9353 0.0004 29 1 1.3586 2.1316 0.0895 30 1 2.6213 1.4026 -0.9314 31 1 3.7400 0.5066 1.0921 32 1 2.4773 1.2357 2.1130 33 1 4.6072 0.9253 2.7967 34 1 4.0633 2.1457 3.9615 35 1 6.1135 1.3957 4.8130 36 1 6.8738 1.3624 3.2103 37 1 6.0780 3.8076 4.8060 38 1 7.7209 3.2352 4.4827 39 1 8.1179 2.6031 2.1201 40 1 8.7440 4.2658 1.9601 41 1 5.7492 3.9828 -2.8290 42 1 5.3235 3.6760 -0.1339 43 1 5.9767 5.2943 0.2506 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001724649270.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:00:15 Heat of formation + Delta-G solvation = 19.064944 kcal Electronic energy + Delta-G solvation = -23222.922785 eV Core-core repulsion = 20076.538345 eV Total energy + Delta-G solvation = -3146.384440 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.44191 -37.79997 -35.38318 -35.14577 -33.07730 -32.03670 -30.62664 -29.42094 -27.16433 -25.61182 -24.51411 -23.56484 -21.89430 -20.64228 -19.64791 -19.06462 -17.77920 -16.96947 -16.32630 -15.74293 -15.41008 -15.21707 -14.49805 -14.35012 -14.01453 -13.80078 -13.58304 -13.47834 -12.75002 -12.56749 -12.23329 -12.06797 -11.78518 -11.61866 -11.47804 -11.04645 -10.93184 -10.90345 -10.80461 -10.68542 -10.49255 -10.30124 -10.14899 -9.95663 -9.82524 -9.53601 -9.29168 -8.83404 -8.37798 -7.79641 -6.65573 -5.48015 -2.91149 2.32998 3.27417 3.46605 3.50645 3.52977 3.63465 4.59187 4.78809 4.95959 4.99937 5.07531 5.14875 5.30666 5.32019 5.41687 5.47988 5.48517 5.58355 5.66298 5.76625 5.77807 5.91220 5.94337 6.01009 6.08711 6.13795 6.18338 6.26902 6.31154 6.41732 6.53031 6.70001 6.70544 6.79842 6.85989 6.86342 7.24755 7.66447 7.79593 7.93877 8.20980 8.63421 8.92182 9.36705 9.98392 10.62189 11.53796 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.012043 B = 0.007860 C = 0.005292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2324.501637 B = 3561.573541 C = 5289.597379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.144 4.144 3 C -0.082 4.082 4 C -0.132 4.132 5 C 0.498 3.502 6 O -0.503 6.503 7 N -0.590 5.590 8 C 0.119 3.881 9 C -0.128 4.128 10 C -0.103 4.103 11 C -0.098 4.098 12 H 0.073 0.927 13 C 0.142 3.858 14 N -0.602 5.602 15 C -0.233 4.233 16 H 0.073 0.927 17 C -0.007 4.007 18 N -0.905 5.905 19 Si 0.908 3.092 20 H -0.287 1.287 21 H -0.290 1.290 22 H -0.286 1.286 23 C 0.137 3.863 24 C 0.131 3.869 25 H 0.057 0.943 26 H 0.093 0.907 27 H 0.095 0.905 28 H 0.107 0.893 29 H 0.073 0.927 30 H 0.086 0.914 31 H 0.090 0.910 32 H 0.084 0.916 33 H 0.072 0.928 34 H 0.050 0.950 35 H 0.070 0.930 36 H 0.070 0.930 37 H 0.057 0.943 38 H 0.063 0.937 39 H 0.020 0.980 40 H 0.019 0.981 41 H 0.252 0.748 42 H 0.140 0.860 43 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.731 -6.568 12.445 15.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.162 4.162 3 C -0.120 4.120 4 C -0.172 4.172 5 C 0.285 3.715 6 O -0.378 6.378 7 N -0.324 5.324 8 C -0.005 4.005 9 C -0.166 4.166 10 C -0.141 4.141 11 C -0.118 4.118 12 H 0.091 0.909 13 C 0.016 3.984 14 N -0.329 5.329 15 C -0.361 4.361 16 H 0.091 0.909 17 C -0.204 4.204 18 N -0.552 5.552 19 Si 0.738 3.262 20 H -0.214 1.214 21 H -0.216 1.216 22 H -0.213 1.213 23 C 0.013 3.987 24 C 0.027 3.973 25 H 0.075 0.925 26 H 0.111 0.889 27 H 0.114 0.886 28 H 0.125 0.875 29 H 0.091 0.909 30 H 0.104 0.896 31 H 0.108 0.892 32 H 0.103 0.897 33 H 0.090 0.910 34 H 0.068 0.932 35 H 0.089 0.911 36 H 0.088 0.912 37 H 0.076 0.924 38 H 0.082 0.918 39 H 0.038 0.962 40 H 0.036 0.964 41 H 0.063 0.937 42 H 0.157 0.843 43 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges -6.854 -6.085 11.786 14.930 hybrid contribution 0.726 -0.293 -0.630 1.005 sum -6.127 -6.378 11.157 14.237 Atomic orbital electron populations 1.23807 0.95972 1.01542 1.02742 1.23051 0.96014 0.98650 0.98520 1.20535 0.97800 0.94749 0.98881 1.21648 0.98710 0.96704 1.00164 1.20582 0.80566 0.88985 0.81355 1.90739 1.63800 1.47412 1.35828 1.46610 1.37528 1.23502 1.24769 1.20733 0.97457 0.92474 0.89845 1.21112 0.96750 0.98115 1.00648 1.20780 1.01035 0.95366 0.96933 1.21018 0.95976 0.99965 0.94822 0.90900 1.20750 0.94052 0.97298 0.86313 1.44381 1.13253 1.74990 1.00265 1.18924 0.97192 1.36189 0.83841 0.90867 1.24827 0.96698 1.01469 0.97359 1.69922 1.12196 1.50272 1.22823 0.86279 0.78592 0.78197 0.83120 1.21359 1.21615 1.21319 1.22385 0.86902 0.98689 0.90764 1.21186 0.90739 0.84861 1.00493 0.92463 0.88860 0.88633 0.87535 0.90874 0.89602 0.89213 0.89749 0.91021 0.93212 0.91093 0.91154 0.92422 0.91843 0.96188 0.96351 0.93701 0.84255 0.96358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.19 14.32 29.01 0.42 -1.78 16 2 C -0.14 -1.72 9.52 -36.03 -0.34 -2.07 16 3 C -0.08 -1.21 4.95 -27.88 -0.14 -1.35 16 4 C -0.13 -1.90 4.03 -27.88 -0.11 -2.01 16 5 C 0.50 9.59 6.89 -10.98 -0.08 9.51 16 6 O -0.50 -11.96 13.12 5.56 0.07 -11.88 16 7 N -0.59 -10.63 3.09 -169.83 -0.52 -11.15 16 8 C 0.12 1.58 5.70 -5.81 -0.03 1.55 16 9 C -0.13 -1.62 5.84 -28.28 -0.17 -1.78 16 10 C -0.10 -1.39 5.18 -28.13 -0.15 -1.54 16 11 C -0.10 -1.76 2.81 -92.35 -0.26 -2.02 16 12 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 13 C 0.14 3.05 6.70 -4.71 -0.03 3.02 16 14 N -0.60 -16.15 3.39 -172.86 -0.59 -16.74 16 15 C -0.23 -6.77 10.25 -15.06 -0.15 -6.92 16 16 H 0.07 2.05 7.83 -52.48 -0.41 1.64 16 17 C -0.01 -0.19 5.48 -17.44 -0.10 -0.29 16 18 N -0.91 -27.94 10.18 55.49 0.56 -27.37 16 19 Si 0.91 22.91 29.55 -169.99 -5.02 17.88 16 20 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 21 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 22 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 23 C 0.14 3.60 4.64 -3.14 -0.01 3.59 16 24 C 0.13 2.69 3.26 -68.85 -0.22 2.47 16 25 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 26 H 0.09 0.84 8.06 -52.49 -0.42 0.42 16 27 H 0.10 1.01 7.84 -52.49 -0.41 0.60 16 28 H 0.11 1.14 8.06 -52.49 -0.42 0.72 16 29 H 0.07 1.11 7.75 -51.93 -0.40 0.70 16 30 H 0.09 1.49 8.10 -51.93 -0.42 1.07 16 31 H 0.09 1.21 7.40 -51.93 -0.38 0.83 16 32 H 0.08 0.98 7.90 -51.93 -0.41 0.57 16 33 H 0.07 0.85 6.07 -51.93 -0.32 0.54 16 34 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.07 1.01 7.10 -51.93 -0.37 0.64 16 37 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.06 0.78 8.10 -51.93 -0.42 0.36 16 39 H 0.02 0.43 6.70 -51.93 -0.35 0.08 16 40 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 41 H 0.25 7.65 8.31 -40.82 -0.34 7.31 16 42 H 0.14 4.02 3.07 -51.93 -0.16 3.86 16 43 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 LS Contribution 329.50 15.07 4.97 4.97 Total: -1.00 -33.77 329.50 -8.90 -42.67 By element: Atomic # 1 Polarization: 8.24 SS G_CDS: -6.99 Total: 1.24 kcal Atomic # 6 Polarization: 1.76 SS G_CDS: -1.38 Total: 0.39 kcal Atomic # 7 Polarization: -54.72 SS G_CDS: -0.54 Total: -55.27 kcal Atomic # 8 Polarization: -11.96 SS G_CDS: 0.07 Total: -11.88 kcal Atomic # 14 Polarization: 22.91 SS G_CDS: -5.02 Total: 17.88 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -33.77 -8.90 -42.67 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724649270.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.737 kcal (2) G-P(sol) polarization free energy of solvation -33.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.672 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds