Wall clock time and date at job start Tue Mar 31 2020 01:00:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50699 * 119.99687 * 2 1 4 4 C 1.53005 * 109.47251 * 124.99836 * 3 2 1 5 5 C 1.50701 * 109.47037 * 179.97438 * 4 3 2 6 6 O 1.21281 * 120.00160 * 0.02562 * 5 4 3 7 7 N 1.34777 * 119.99720 * 179.97438 * 5 4 3 8 8 C 1.44510 * 116.65216 * 353.91433 * 7 5 4 9 9 C 1.51609 * 112.73484 * 154.48257 * 8 7 5 10 10 C 1.51328 * 111.98855 * 42.38219 * 9 8 7 11 11 C 1.51915 * 112.94095 * 303.77784 * 10 9 8 12 12 H 1.08997 * 107.47976 * 170.02398 * 11 10 9 13 13 C 1.51318 * 111.44329 * 289.18387 * 11 10 9 14 14 N 1.46827 * 107.26200 * 140.46662 * 13 11 10 15 15 C 1.36938 * 125.38031 * 181.17454 * 14 13 11 16 16 H 1.08006 * 119.99912 * 0.04630 * 15 14 13 17 17 C 1.38806 * 120.00086 * 180.02562 * 15 14 13 18 18 N 1.31613 * 120.00245 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 120.00020 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.47251 * 59.99628 * 19 17 15 21 21 H 1.48496 * 109.47258 * 180.02562 * 19 17 15 22 22 H 1.48506 * 109.47012 * 300.00000 * 19 17 15 23 23 C 1.46902 * 109.24481 * 1.18816 * 14 13 11 24 24 C 1.44114 * 116.64886 * 173.93287 * 7 5 4 25 25 H 1.08999 * 109.49121 * 75.21896 * 24 7 5 26 26 H 1.07993 * 119.99681 * 180.02562 * 1 2 3 27 27 H 1.08000 * 120.00133 * 0.02562 * 1 2 3 28 28 H 1.08000 * 120.00133 * 179.97438 * 2 1 3 29 29 H 1.08995 * 109.47523 * 4.99782 * 3 2 1 30 30 H 1.09005 * 109.46803 * 244.99669 * 3 2 1 31 31 H 1.09005 * 109.46814 * 59.99666 * 4 3 2 32 32 H 1.08991 * 109.47073 * 299.99848 * 4 3 2 33 33 H 1.09003 * 108.82624 * 33.64199 * 8 7 5 34 34 H 1.08993 * 108.74273 * 275.26490 * 8 7 5 35 35 H 1.08991 * 108.96540 * 163.00625 * 9 8 7 36 36 H 1.09005 * 108.96411 * 281.76726 * 9 8 7 37 37 H 1.08997 * 108.68156 * 65.70612 * 10 9 8 38 38 H 1.08999 * 108.68251 * 183.64130 * 10 9 8 39 39 H 1.08994 * 109.84235 * 21.11958 * 13 11 10 40 40 H 1.09001 * 110.17895 * 259.99574 * 13 11 10 41 41 H 0.97003 * 120.00247 * 179.97438 * 18 17 15 42 42 H 1.08998 * 110.08890 * 222.86990 * 23 14 13 43 43 H 1.08998 * 110.08499 * 101.28951 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0350 1.3332 1.1817 5 6 3.7889 2.6381 1.1813 6 8 3.5703 3.4645 0.3209 7 7 4.7053 2.8872 2.1377 8 6 4.8112 1.9161 3.2026 9 6 6.1809 1.9063 3.8525 10 6 6.7123 3.3055 4.0755 11 6 6.7710 4.1271 2.7990 12 1 6.9898 5.1566 3.0820 13 6 7.8608 3.6330 1.8727 14 7 7.3331 3.7001 0.5042 15 6 8.0067 3.3175 -0.6250 16 1 9.0111 2.9278 -0.5486 17 6 7.3985 3.4299 -1.8676 18 7 6.1742 3.9039 -1.9606 19 14 8.3176 2.9086 -3.4080 20 1 8.6710 1.4696 -3.3104 21 1 7.4553 3.1276 -4.5970 22 1 9.5576 3.7149 -3.5412 23 6 5.9684 4.2429 0.5376 24 6 5.4784 4.0948 1.9932 25 1 4.8632 4.9545 2.2586 26 1 -0.5399 -0.9353 0.0004 27 1 -0.5400 0.9353 -0.0004 28 1 1.8501 -0.9353 0.0004 29 1 1.3586 2.1316 0.0895 30 1 2.6213 1.4026 -0.9314 31 1 3.7400 0.5066 1.0921 32 1 2.4773 1.2357 2.1130 33 1 4.6072 0.9253 2.7967 34 1 4.0633 2.1457 3.9615 35 1 6.1135 1.3957 4.8130 36 1 6.8738 1.3624 3.2103 37 1 6.0780 3.8076 4.8060 38 1 7.7209 3.2352 4.4827 39 1 8.1179 2.6031 2.1201 40 1 8.7440 4.2658 1.9601 41 1 5.7492 3.9828 -2.8290 42 1 5.3235 3.6760 -0.1339 43 1 5.9767 5.2943 0.2506 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001724649270.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:00:15 Heat of formation + Delta-G solvation = -2.792426 kcal Electronic energy + Delta-G solvation = -23223.870591 eV Core-core repulsion = 20076.538345 eV Total energy + Delta-G solvation = -3147.332247 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.91917 -39.32739 -36.99102 -36.26249 -34.69108 -33.72510 -31.99822 -31.04129 -28.80233 -27.35285 -25.94724 -24.98948 -23.26204 -22.44767 -20.63326 -20.52912 -19.28614 -18.77026 -17.80043 -17.22068 -17.05247 -16.47492 -16.22505 -15.73193 -15.57935 -15.06595 -15.03499 -14.69721 -14.22924 -13.86297 -13.72545 -13.58472 -13.34955 -13.08068 -13.03623 -12.98510 -12.67683 -12.35455 -12.17346 -11.99313 -11.92882 -11.80523 -11.68947 -11.55183 -11.36965 -11.33222 -10.76961 -10.32963 -10.11992 -9.30373 -8.82902 -7.71064 -5.18398 1.40757 1.42768 1.45240 1.52161 1.81762 2.28465 2.48852 3.34662 3.53935 3.71032 3.81906 3.86600 4.01993 4.04557 4.11128 4.12464 4.20288 4.39956 4.48215 4.52797 4.63578 4.67182 4.74853 4.78810 4.89167 4.95362 4.96496 5.01772 5.11950 5.16333 5.21832 5.26848 5.36029 5.42607 5.49450 5.51246 5.76711 5.88265 5.95032 6.07179 6.47049 6.65593 7.11974 7.45595 7.83843 8.45583 9.27290 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.012043 B = 0.007860 C = 0.005292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2324.501637 B = 3561.573541 C = 5289.597379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.157 4.157 3 C -0.078 4.078 4 C -0.119 4.119 5 C 0.482 3.518 6 O -0.564 6.564 7 N -0.590 5.590 8 C 0.104 3.896 9 C -0.126 4.126 10 C -0.098 4.098 11 C -0.091 4.091 12 H 0.080 0.920 13 C 0.138 3.862 14 N -0.624 5.624 15 C -0.247 4.247 16 H 0.080 0.920 17 C -0.067 4.067 18 N -0.936 5.936 19 Si 0.977 3.023 20 H -0.273 1.273 21 H -0.297 1.297 22 H -0.277 1.277 23 C 0.137 3.863 24 C 0.143 3.857 25 H 0.053 0.947 26 H 0.118 0.882 27 H 0.093 0.907 28 H 0.123 0.877 29 H 0.060 0.940 30 H 0.044 0.956 31 H 0.103 0.897 32 H 0.125 0.875 33 H 0.089 0.911 34 H 0.084 0.916 35 H 0.116 0.884 36 H 0.048 0.952 37 H 0.083 0.917 38 H 0.082 0.918 39 H 0.031 0.969 40 H 0.019 0.981 41 H 0.241 0.759 42 H 0.117 0.883 43 H -0.037 1.037 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.757 -9.153 15.402 19.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.175 4.175 3 C -0.116 4.116 4 C -0.158 4.158 5 C 0.271 3.729 6 O -0.443 6.443 7 N -0.323 5.323 8 C -0.017 4.017 9 C -0.164 4.164 10 C -0.136 4.136 11 C -0.110 4.110 12 H 0.098 0.902 13 C 0.013 3.987 14 N -0.350 5.350 15 C -0.377 4.377 16 H 0.098 0.902 17 C -0.261 4.261 18 N -0.584 5.584 19 Si 0.805 3.195 20 H -0.199 1.199 21 H -0.223 1.223 22 H -0.203 1.203 23 C 0.012 3.988 24 C 0.037 3.963 25 H 0.071 0.929 26 H 0.136 0.864 27 H 0.111 0.889 28 H 0.141 0.859 29 H 0.078 0.922 30 H 0.062 0.938 31 H 0.121 0.879 32 H 0.143 0.857 33 H 0.108 0.892 34 H 0.102 0.898 35 H 0.134 0.866 36 H 0.067 0.933 37 H 0.102 0.898 38 H 0.100 0.900 39 H 0.049 0.951 40 H 0.037 0.963 41 H 0.051 0.949 42 H 0.134 0.866 43 H -0.019 1.019 Dipole moment (debyes) X Y Z Total from point charges -6.845 -8.707 14.819 18.501 hybrid contribution 0.731 0.558 -1.536 1.790 sum -6.114 -8.149 13.284 16.740 Atomic orbital electron populations 1.24027 0.95577 1.02633 1.00247 1.22927 0.96359 0.97499 1.00680 1.20420 0.97549 0.96316 0.97329 1.21651 0.98573 0.93855 1.01733 1.21586 0.80639 0.90080 0.80558 1.90718 1.65800 1.49631 1.38102 1.46746 1.36291 1.23416 1.25820 1.21202 0.99286 0.91966 0.89247 1.21170 0.95380 0.97514 1.02315 1.20794 1.03029 0.95386 0.94410 1.21010 0.92615 1.01563 0.95848 0.90198 1.20977 0.95257 0.97932 0.84555 1.44688 1.13759 1.74643 1.01921 1.19359 0.97640 1.35580 0.85072 0.90170 1.25729 0.97608 1.02074 1.00656 1.70250 1.13893 1.51755 1.22540 0.85181 0.77273 0.78370 0.78666 1.19926 1.22329 1.20283 1.22136 0.86995 0.94973 0.94708 1.20763 0.92160 0.86418 0.96911 0.92937 0.86377 0.88888 0.85889 0.92158 0.93765 0.87864 0.85733 0.89244 0.89756 0.86608 0.93315 0.89825 0.89959 0.95131 0.96324 0.94913 0.86593 1.01874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.62 14.32 67.78 0.97 -2.65 16 2 C -0.16 -3.50 9.52 25.64 0.24 -3.25 16 3 C -0.08 -2.35 4.95 29.85 0.15 -2.21 16 4 C -0.12 -3.27 4.03 29.85 0.12 -3.15 16 5 C 0.48 18.91 6.89 87.66 0.60 19.52 16 6 O -0.56 -28.73 13.12 -3.03 -0.04 -28.77 16 7 N -0.59 -20.74 3.09 -809.61 -2.50 -23.24 16 8 C 0.10 2.37 5.70 86.29 0.49 2.86 16 9 C -0.13 -2.59 5.84 29.59 0.17 -2.42 16 10 C -0.10 -2.24 5.18 29.69 0.15 -2.09 16 11 C -0.09 -3.13 2.81 -11.92 -0.03 -3.17 16 12 H 0.08 2.61 8.14 -2.39 -0.02 2.59 16 13 C 0.14 5.89 6.70 85.77 0.57 6.46 16 14 N -0.62 -34.64 3.39 -700.80 -2.37 -37.02 16 15 C -0.25 -14.80 10.25 84.03 0.86 -13.94 16 16 H 0.08 4.54 7.83 -2.91 -0.02 4.52 16 17 C -0.07 -4.10 5.48 84.86 0.47 -3.64 16 18 N -0.94 -61.41 10.18 21.65 0.22 -61.19 16 19 Si 0.98 48.58 29.55 68.60 2.03 50.61 16 20 H -0.27 -12.89 7.11 99.48 0.71 -12.19 16 21 H -0.30 -14.95 7.11 99.48 0.71 -14.24 16 22 H -0.28 -13.21 7.11 99.48 0.71 -12.50 16 23 C 0.14 7.66 4.64 86.74 0.40 8.06 16 24 C 0.14 5.95 3.26 45.66 0.15 6.10 16 25 H 0.05 2.21 8.14 -2.39 -0.02 2.19 16 26 H 0.12 1.72 8.06 -2.91 -0.02 1.70 16 27 H 0.09 1.83 7.84 -2.91 -0.02 1.81 16 28 H 0.12 2.34 8.06 -2.91 -0.02 2.32 16 29 H 0.06 1.91 7.75 -2.39 -0.02 1.89 16 30 H 0.04 1.67 8.10 -2.38 -0.02 1.65 16 31 H 0.10 2.59 7.40 -2.38 -0.02 2.57 16 32 H 0.12 2.43 7.90 -2.39 -0.02 2.41 16 33 H 0.09 1.74 6.07 -2.39 -0.01 1.73 16 34 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 35 H 0.12 1.44 8.14 -2.39 -0.02 1.42 16 36 H 0.05 1.22 7.10 -2.38 -0.02 1.21 16 37 H 0.08 1.55 8.14 -2.39 -0.02 1.54 16 38 H 0.08 1.63 8.10 -2.39 -0.02 1.61 16 39 H 0.03 1.26 6.70 -2.39 -0.02 1.24 16 40 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 41 H 0.24 15.63 8.31 -92.71 -0.77 14.86 16 42 H 0.12 7.18 3.07 -2.39 -0.01 7.17 16 43 H -0.04 -2.36 8.14 -2.39 -0.02 -2.38 16 Total: -1.00 -81.46 329.50 3.63 -77.82 By element: Atomic # 1 Polarization: 14.33 SS G_CDS: 0.97 Total: 15.30 kcal Atomic # 6 Polarization: 1.17 SS G_CDS: 5.32 Total: 6.49 kcal Atomic # 7 Polarization: -116.80 SS G_CDS: -4.65 Total: -121.45 kcal Atomic # 8 Polarization: -28.73 SS G_CDS: -0.04 Total: -28.77 kcal Atomic # 14 Polarization: 48.58 SS G_CDS: 2.03 Total: 50.61 kcal Total: -81.46 3.63 -77.82 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724649270.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.032 kcal (2) G-P(sol) polarization free energy of solvation -81.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.825 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds