Wall clock time and date at job start Tue Mar 31 2020 00:35:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.46837 * 2 1 4 4 C 1.52996 * 109.47068 * 240.00472 * 2 1 3 5 5 C 1.47193 * 109.47354 * 119.99744 * 2 1 3 6 6 C 2.64598 * 109.47335 * 119.99943 * 2 1 3 7 7 C 4.07793 * 109.47291 * 119.99921 * 2 1 3 8 8 O 1.21615 * 119.99831 * 71.38619 * 7 6 5 9 9 N 1.34772 * 120.00243 * 251.38222 * 7 6 5 10 10 C 1.46500 * 120.00391 * 180.02562 * 9 7 6 11 11 C 1.53003 * 109.47141 * 175.91518 * 10 9 7 12 12 N 1.46503 * 112.85210 * 292.02495 * 11 10 9 13 13 C 1.36929 * 120.00105 * 294.78926 * 12 11 10 14 14 H 1.08000 * 120.00103 * 353.80023 * 13 12 11 15 15 C 1.38813 * 120.00093 * 173.79993 * 13 12 11 16 16 N 1.31621 * 120.00189 * 179.97438 * 15 13 12 17 17 Si 1.86795 * 119.99843 * 359.97438 * 15 13 12 18 18 H 1.48501 * 109.47089 * 90.00211 * 17 15 13 19 19 H 1.48504 * 109.47212 * 209.99662 * 17 15 13 20 20 H 1.48497 * 109.47299 * 330.00037 * 17 15 13 21 21 C 1.53780 * 113.61402 * 160.82983 * 11 10 9 22 22 C 1.53948 * 87.02104 * 220.05107 * 21 11 10 23 23 C 1.53782 * 87.11325 * 25.36297 * 22 21 11 24 24 H 1.09005 * 109.46918 * 299.99959 * 1 2 3 25 25 H 1.08997 * 109.47001 * 59.99604 * 1 2 3 26 26 H 1.08997 * 109.47055 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47364 * 180.02562 * 3 2 1 28 28 H 1.08997 * 109.47648 * 300.00000 * 3 2 1 29 29 H 1.09005 * 109.47333 * 60.00295 * 3 2 1 30 30 H 1.09002 * 109.47140 * 299.99617 * 4 2 1 31 31 H 1.08997 * 109.47672 * 59.99222 * 4 2 1 32 32 H 1.09000 * 109.47302 * 180.02562 * 4 2 1 33 33 H 0.96997 * 119.99743 * 0.02562 * 9 7 6 34 34 H 1.08996 * 109.47252 * 295.91828 * 10 9 7 35 35 H 1.08998 * 109.46898 * 55.92077 * 10 9 7 36 36 H 0.97003 * 119.99723 * 114.78081 * 12 11 10 37 37 H 0.96999 * 120.00145 * 180.02562 * 16 15 13 38 38 H 1.09005 * 113.61386 * 334.57062 * 21 11 10 39 39 H 1.09005 * 113.61790 * 105.46826 * 21 11 10 40 40 H 1.09004 * 113.53542 * 270.81300 * 22 21 11 41 41 H 1.08999 * 113.66814 * 139.93016 * 22 21 11 42 42 H 1.09000 * 113.61619 * 220.09580 * 23 22 21 43 43 H 1.08998 * 113.61453 * 89.18836 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7211 -1.2493 5 6 2.0207 -0.6938 1.2018 6 6 2.4121 -1.2473 2.1604 7 6 2.8895 -1.9223 3.3296 8 8 3.2882 -3.0684 3.2498 9 7 2.8969 -1.2875 4.5184 10 6 3.3858 -1.9778 5.7145 11 6 3.3828 -1.0096 6.8992 12 7 4.3724 0.0618 6.7608 13 6 5.7088 -0.2364 6.7596 14 1 6.0371 -1.2455 6.9604 15 6 6.6417 0.7582 6.5001 16 7 7.9263 0.4716 6.4994 17 14 6.0739 2.5034 6.1520 18 1 5.9899 3.2602 7.4270 19 1 7.0439 3.1680 5.2450 20 1 4.7365 2.4695 5.5074 21 6 3.4210 -1.7103 8.2676 22 6 2.4149 -0.6493 8.7491 23 6 1.9803 -0.5074 7.2808 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0276 0.0005 27 1 3.1300 1.4426 -0.0005 28 1 1.6767 1.9564 -0.8899 29 1 1.6766 1.9564 0.8900 30 1 1.6767 -1.7488 -1.2493 31 1 1.6766 -0.2074 -2.1392 32 1 3.1300 -0.7215 -1.2491 33 1 2.5785 -0.3734 4.5821 34 1 2.7366 -2.8249 5.9359 35 1 4.4008 -2.3340 5.5390 36 1 4.0808 0.9825 6.6700 37 1 8.5782 1.1668 6.3185 38 1 3.0148 -2.7218 8.2516 39 1 4.3906 -1.6503 8.7620 40 1 2.8868 0.2463 9.1532 41 1 1.6356 -1.0481 9.3985 42 1 1.7885 0.5225 6.9798 43 1 1.1795 -1.1892 6.9946 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001724785709.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:35:54 Heat of formation + Delta-G solvation = 34.518247 kcal Electronic energy + Delta-G solvation = -21535.624698 eV Core-core repulsion = 18389.910364 eV Total energy + Delta-G solvation = -3145.714335 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -39.63399 -38.51307 -37.65888 -34.01355 -33.31273 -32.17631 -30.59264 -27.71360 -27.58764 -27.55011 -25.39141 -24.16864 -23.11210 -21.60862 -20.66677 -18.70177 -17.98058 -17.64109 -16.06228 -15.81443 -15.24092 -14.87309 -14.54397 -14.52671 -14.35741 -14.25991 -13.73142 -13.04244 -12.75616 -12.71421 -12.69816 -12.40218 -11.99025 -11.97140 -11.92263 -11.55184 -11.49464 -11.46459 -11.22747 -10.96731 -10.51094 -10.43356 -10.29116 -10.24185 -10.13712 -9.92725 -9.70845 -9.53853 -8.94065 -8.64071 -7.36353 -5.81780 -3.19686 1.77067 2.40811 3.31160 3.32541 3.33347 3.40414 3.76982 4.23168 4.52978 4.65157 4.68276 4.78345 4.96408 5.05942 5.14335 5.24413 5.31493 5.34050 5.38228 5.39730 5.47431 5.56719 5.58076 5.65990 5.76477 5.82204 5.95074 5.99441 6.01086 6.01783 6.08995 6.18674 6.19629 6.48137 6.61744 6.77550 6.80952 6.93032 7.31313 7.80316 7.94796 8.36700 8.45866 9.13529 9.85167 10.03198 11.36062 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.013800 B = 0.004921 C = 0.004232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2028.462143 B = 5688.709977 C = 6615.244393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.039 3.961 3 C -0.143 4.143 4 C -0.142 4.142 5 C -0.087 4.087 6 C -0.207 4.207 7 C 0.626 3.374 8 O -0.533 6.533 9 N -0.694 5.694 10 C 0.119 3.881 11 C 0.178 3.822 12 N -0.724 5.724 13 C -0.243 4.243 14 H 0.093 0.907 15 C 0.010 3.990 16 N -0.929 5.929 17 Si 0.881 3.119 18 H -0.284 1.284 19 H -0.291 1.291 20 H -0.277 1.277 21 C -0.146 4.146 22 C -0.129 4.129 23 C -0.148 4.148 24 H 0.061 0.939 25 H 0.068 0.932 26 H 0.061 0.939 27 H 0.063 0.937 28 H 0.068 0.932 29 H 0.062 0.938 30 H 0.061 0.939 31 H 0.068 0.932 32 H 0.063 0.937 33 H 0.400 0.600 34 H 0.060 0.940 35 H 0.080 0.920 36 H 0.363 0.637 37 H 0.260 0.740 38 H 0.072 0.928 39 H 0.080 0.920 40 H 0.080 0.920 41 H 0.057 0.943 42 H 0.062 0.938 43 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.246 1.202 -8.953 19.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.039 3.961 3 C -0.200 4.200 4 C -0.199 4.199 5 C -0.090 4.090 6 C -0.210 4.210 7 C 0.412 3.588 8 O -0.411 6.411 9 N -0.342 5.342 10 C -0.007 4.007 11 C 0.085 3.915 12 N -0.366 5.366 13 C -0.372 4.372 14 H 0.110 0.890 15 C -0.186 4.186 16 N -0.576 5.576 17 Si 0.711 3.289 18 H -0.211 1.211 19 H -0.218 1.218 20 H -0.204 1.204 21 C -0.186 4.186 22 C -0.167 4.167 23 C -0.186 4.186 24 H 0.081 0.919 25 H 0.087 0.913 26 H 0.080 0.920 27 H 0.082 0.918 28 H 0.087 0.913 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.087 0.913 32 H 0.082 0.918 33 H 0.234 0.766 34 H 0.078 0.922 35 H 0.099 0.901 36 H 0.196 0.804 37 H 0.070 0.930 38 H 0.091 0.909 39 H 0.099 0.901 40 H 0.098 0.902 41 H 0.076 0.924 42 H 0.081 0.919 43 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -16.686 0.275 -8.966 18.945 hybrid contribution -0.233 1.770 -0.204 1.797 sum -16.919 2.045 -9.170 19.353 Atomic orbital electron populations 1.21891 0.92419 1.02738 1.02685 1.17884 0.95805 0.94361 0.88054 1.21913 1.02048 0.93335 1.02682 1.21908 1.01977 1.00590 0.95460 1.22418 0.94966 0.96673 0.94918 1.20959 1.03092 1.00278 0.96698 1.14711 0.78388 0.84991 0.80744 1.90830 1.47595 1.17167 1.85554 1.45637 1.63689 1.17446 1.07433 1.21971 1.00208 0.94661 0.83830 1.20766 0.89077 0.89901 0.91735 1.42402 1.02654 1.02874 1.88700 1.18941 0.80042 0.97425 1.40818 0.88951 1.24663 0.95082 0.97509 1.01366 1.69694 0.99661 1.32669 1.55550 0.86618 0.77724 0.86528 0.78023 1.21114 1.21790 1.20353 1.23301 1.00370 0.97019 0.97922 1.22682 0.98521 1.00090 0.95402 1.23207 0.96817 1.01050 0.97522 0.91945 0.91258 0.91993 0.91773 0.91278 0.91861 0.91941 0.91324 0.91830 0.76564 0.92151 0.90132 0.80354 0.92993 0.90910 0.90144 0.90152 0.92408 0.91878 0.89974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.10 8.43 37.16 0.31 -0.79 16 2 C 0.04 0.39 0.95 -157.30 -0.15 0.24 16 3 C -0.14 -1.27 8.43 37.16 0.31 -0.96 16 4 C -0.14 -1.24 8.43 37.16 0.31 -0.93 16 5 C -0.09 -1.21 11.77 -37.13 -0.44 -1.65 16 6 C -0.21 -3.44 13.61 -38.84 -0.53 -3.96 16 7 C 0.63 11.82 7.65 -14.34 -0.11 11.72 16 8 O -0.53 -11.81 17.09 5.26 0.09 -11.72 16 9 N -0.69 -12.08 5.43 -62.77 -0.34 -12.42 16 10 C 0.12 2.16 5.08 -4.04 -0.02 2.14 16 11 C 0.18 3.15 0.82 -131.00 -0.11 3.04 16 12 N -0.72 -15.79 4.98 -46.48 -0.23 -16.02 16 13 C -0.24 -6.50 9.52 -15.06 -0.14 -6.64 16 14 H 0.09 2.70 8.06 -52.49 -0.42 2.28 16 15 C 0.01 0.29 5.50 -17.43 -0.10 0.19 16 16 N -0.93 -28.74 13.97 55.49 0.78 -27.96 16 17 Si 0.88 21.44 27.67 -169.99 -4.70 16.74 16 18 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 19 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 20 H -0.28 -6.27 6.61 56.52 0.37 -5.90 16 21 C -0.15 -2.39 7.29 -25.83 -0.19 -2.58 16 22 C -0.13 -1.86 8.00 -25.83 -0.21 -2.07 16 23 C -0.15 -2.09 6.98 -25.92 -0.18 -2.27 16 24 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 25 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 26 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 27 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.40 6.32 8.19 -40.82 -0.33 5.99 16 34 H 0.06 1.00 8.01 -51.93 -0.42 0.58 16 35 H 0.08 1.76 7.80 -51.93 -0.41 1.35 16 36 H 0.36 7.79 5.80 -40.82 -0.24 7.56 16 37 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 38 H 0.07 1.05 8.01 -51.93 -0.42 0.63 16 39 H 0.08 1.52 7.86 -51.93 -0.41 1.11 16 40 H 0.08 1.25 8.14 -51.93 -0.42 0.82 16 41 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 42 H 0.06 0.86 8.09 -51.93 -0.42 0.44 16 43 H 0.08 1.02 8.10 -51.93 -0.42 0.60 16 LS Contribution 360.23 15.07 5.43 5.43 Total: -1.00 -32.42 360.23 -7.50 -39.92 By element: Atomic # 1 Polarization: 17.85 SS G_CDS: -7.29 Total: 10.56 kcal Atomic # 6 Polarization: -3.29 SS G_CDS: -1.23 Total: -4.52 kcal Atomic # 7 Polarization: -56.61 SS G_CDS: 0.20 Total: -56.40 kcal Atomic # 8 Polarization: -11.81 SS G_CDS: 0.09 Total: -11.72 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -4.70 Total: 16.74 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -32.42 -7.50 -39.92 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724785709.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.438 kcal (2) G-P(sol) polarization free energy of solvation -32.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.920 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds