Wall clock time and date at job start Tue Mar 31 2020 00:35:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.46837 * 2 1 4 4 C 1.52996 * 109.47068 * 240.00472 * 2 1 3 5 5 C 1.47193 * 109.47354 * 119.99744 * 2 1 3 6 6 C 2.64598 * 109.47335 * 119.99943 * 2 1 3 7 7 C 4.07793 * 109.47291 * 119.99921 * 2 1 3 8 8 O 1.21615 * 119.99831 * 71.38619 * 7 6 5 9 9 N 1.34772 * 120.00243 * 251.38222 * 7 6 5 10 10 C 1.46500 * 120.00391 * 180.02562 * 9 7 6 11 11 C 1.53003 * 109.47141 * 175.91518 * 10 9 7 12 12 N 1.46503 * 112.85210 * 292.02495 * 11 10 9 13 13 C 1.36929 * 120.00105 * 294.78926 * 12 11 10 14 14 H 1.08000 * 120.00103 * 353.80023 * 13 12 11 15 15 C 1.38813 * 120.00093 * 173.79993 * 13 12 11 16 16 N 1.31621 * 120.00189 * 179.97438 * 15 13 12 17 17 Si 1.86795 * 119.99843 * 359.97438 * 15 13 12 18 18 H 1.48501 * 109.47089 * 90.00211 * 17 15 13 19 19 H 1.48504 * 109.47212 * 209.99662 * 17 15 13 20 20 H 1.48497 * 109.47299 * 330.00037 * 17 15 13 21 21 C 1.53780 * 113.61402 * 160.82983 * 11 10 9 22 22 C 1.53948 * 87.02104 * 220.05107 * 21 11 10 23 23 C 1.53782 * 87.11325 * 25.36297 * 22 21 11 24 24 H 1.09005 * 109.46918 * 299.99959 * 1 2 3 25 25 H 1.08997 * 109.47001 * 59.99604 * 1 2 3 26 26 H 1.08997 * 109.47055 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47364 * 180.02562 * 3 2 1 28 28 H 1.08997 * 109.47648 * 300.00000 * 3 2 1 29 29 H 1.09005 * 109.47333 * 60.00295 * 3 2 1 30 30 H 1.09002 * 109.47140 * 299.99617 * 4 2 1 31 31 H 1.08997 * 109.47672 * 59.99222 * 4 2 1 32 32 H 1.09000 * 109.47302 * 180.02562 * 4 2 1 33 33 H 0.96997 * 119.99743 * 0.02562 * 9 7 6 34 34 H 1.08996 * 109.47252 * 295.91828 * 10 9 7 35 35 H 1.08998 * 109.46898 * 55.92077 * 10 9 7 36 36 H 0.97003 * 119.99723 * 114.78081 * 12 11 10 37 37 H 0.96999 * 120.00145 * 180.02562 * 16 15 13 38 38 H 1.09005 * 113.61386 * 334.57062 * 21 11 10 39 39 H 1.09005 * 113.61790 * 105.46826 * 21 11 10 40 40 H 1.09004 * 113.53542 * 270.81300 * 22 21 11 41 41 H 1.08999 * 113.66814 * 139.93016 * 22 21 11 42 42 H 1.09000 * 113.61619 * 220.09580 * 23 22 21 43 43 H 1.08998 * 113.61453 * 89.18836 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7211 -1.2493 5 6 2.0207 -0.6938 1.2018 6 6 2.4121 -1.2473 2.1604 7 6 2.8895 -1.9223 3.3296 8 8 3.2882 -3.0684 3.2498 9 7 2.8969 -1.2875 4.5184 10 6 3.3858 -1.9778 5.7145 11 6 3.3828 -1.0096 6.8992 12 7 4.3724 0.0618 6.7608 13 6 5.7088 -0.2364 6.7596 14 1 6.0371 -1.2455 6.9604 15 6 6.6417 0.7582 6.5001 16 7 7.9263 0.4716 6.4994 17 14 6.0739 2.5034 6.1520 18 1 5.9899 3.2602 7.4270 19 1 7.0439 3.1680 5.2450 20 1 4.7365 2.4695 5.5074 21 6 3.4210 -1.7103 8.2676 22 6 2.4149 -0.6493 8.7491 23 6 1.9803 -0.5074 7.2808 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0276 0.0005 27 1 3.1300 1.4426 -0.0005 28 1 1.6767 1.9564 -0.8899 29 1 1.6766 1.9564 0.8900 30 1 1.6767 -1.7488 -1.2493 31 1 1.6766 -0.2074 -2.1392 32 1 3.1300 -0.7215 -1.2491 33 1 2.5785 -0.3734 4.5821 34 1 2.7366 -2.8249 5.9359 35 1 4.4008 -2.3340 5.5390 36 1 4.0808 0.9825 6.6700 37 1 8.5782 1.1668 6.3185 38 1 3.0148 -2.7218 8.2516 39 1 4.3906 -1.6503 8.7620 40 1 2.8868 0.2463 9.1532 41 1 1.6356 -1.0481 9.3985 42 1 1.7885 0.5225 6.9798 43 1 1.1795 -1.1892 6.9946 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001724785709.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:35:54 Heat of formation + Delta-G solvation = 12.741791 kcal Electronic energy + Delta-G solvation = -21536.568996 eV Core-core repulsion = 18389.910364 eV Total energy + Delta-G solvation = -3146.658633 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.10037 -39.94975 -38.48555 -35.50848 -35.27885 -33.34665 -32.57519 -29.19298 -28.22611 -28.20077 -26.72281 -25.82422 -24.63428 -22.92045 -21.84327 -20.09834 -19.78944 -19.30417 -17.35594 -16.98584 -16.68391 -16.39809 -16.09937 -15.83214 -15.23702 -15.21440 -15.17500 -14.75752 -14.56678 -14.07720 -13.37207 -13.33475 -13.23164 -13.12079 -13.00198 -12.76946 -12.63439 -12.61164 -12.30551 -12.27745 -12.23557 -11.81898 -11.71343 -11.63529 -11.51955 -11.33338 -11.25489 -10.98010 -10.84328 -10.16679 -9.32780 -8.01671 -5.36638 0.46318 1.21110 1.34565 1.39384 1.46223 2.02700 2.43966 2.47608 3.10074 3.28315 3.42271 3.72371 3.91660 3.93055 3.94114 3.94950 4.03142 4.15190 4.30380 4.59652 4.69035 4.72279 4.74105 4.82327 4.83753 4.90208 4.94503 4.94893 4.97422 5.05948 5.11524 5.17968 5.23941 5.33775 5.34571 5.36050 5.41356 5.62765 5.83038 6.14091 6.22052 6.38450 7.02029 7.08326 7.81957 8.01192 9.20079 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.013800 B = 0.004921 C = 0.004232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2028.462143 B = 5688.709977 C = 6615.244393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.031 3.969 3 C -0.142 4.142 4 C -0.143 4.143 5 C -0.042 4.042 6 C -0.268 4.268 7 C 0.625 3.375 8 O -0.579 6.579 9 N -0.684 5.684 10 C 0.126 3.874 11 C 0.158 3.842 12 N -0.723 5.723 13 C -0.217 4.217 14 H 0.052 0.948 15 C -0.065 4.065 16 N -0.986 5.986 17 Si 0.952 3.048 18 H -0.277 1.277 19 H -0.304 1.304 20 H -0.245 1.245 21 C -0.149 4.149 22 C -0.119 4.119 23 C -0.127 4.127 24 H 0.062 0.938 25 H 0.098 0.902 26 H 0.058 0.942 27 H 0.049 0.951 28 H 0.099 0.901 29 H 0.061 0.939 30 H 0.057 0.943 31 H 0.100 0.900 32 H 0.050 0.950 33 H 0.411 0.589 34 H 0.081 0.919 35 H 0.032 0.968 36 H 0.369 0.631 37 H 0.255 0.745 38 H 0.096 0.904 39 H 0.044 0.956 40 H 0.067 0.933 41 H 0.089 0.911 42 H 0.076 0.924 43 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.270 3.235 -10.142 23.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.031 3.969 3 C -0.199 4.199 4 C -0.200 4.200 5 C -0.045 4.045 6 C -0.271 4.271 7 C 0.413 3.587 8 O -0.461 6.461 9 N -0.332 5.332 10 C 0.001 3.999 11 C 0.067 3.933 12 N -0.366 5.366 13 C -0.348 4.348 14 H 0.070 0.930 15 C -0.256 4.256 16 N -0.637 5.637 17 Si 0.779 3.221 18 H -0.203 1.203 19 H -0.231 1.231 20 H -0.170 1.170 21 C -0.189 4.189 22 C -0.156 4.156 23 C -0.164 4.164 24 H 0.081 0.919 25 H 0.116 0.884 26 H 0.077 0.923 27 H 0.068 0.932 28 H 0.118 0.882 29 H 0.080 0.920 30 H 0.076 0.924 31 H 0.118 0.882 32 H 0.069 0.931 33 H 0.246 0.754 34 H 0.099 0.901 35 H 0.050 0.950 36 H 0.203 0.797 37 H 0.064 0.936 38 H 0.114 0.886 39 H 0.063 0.937 40 H 0.086 0.914 41 H 0.108 0.892 42 H 0.095 0.905 43 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -20.794 2.318 -10.135 23.248 hybrid contribution 0.989 1.025 0.125 1.430 sum -19.805 3.343 -10.010 22.441 Atomic orbital electron populations 1.21910 0.90240 1.03064 1.04199 1.18332 0.97461 0.94677 0.86455 1.21948 1.01208 0.92568 1.04204 1.21948 1.01245 1.00729 0.96033 1.23441 0.92073 0.94574 0.94372 1.20671 1.06012 1.02763 0.97689 1.14996 0.77537 0.84553 0.81647 1.90789 1.49781 1.19175 1.86321 1.45561 1.63007 1.17750 1.06921 1.21841 0.98045 0.95661 0.84393 1.21144 0.90913 0.89437 0.91802 1.42292 1.01401 1.04298 1.88596 1.18803 0.82513 0.95437 1.38027 0.93034 1.25499 0.95034 1.02449 1.02586 1.69900 1.01311 1.34041 1.58418 0.85455 0.78279 0.80380 0.77942 1.20293 1.23121 1.16951 1.23349 0.99695 0.99211 0.96657 1.22625 0.98214 0.98560 0.96239 1.23168 0.94375 1.02347 0.96526 0.91886 0.88363 0.92314 0.93182 0.88222 0.91962 0.92357 0.88174 0.93097 0.75352 0.90071 0.94952 0.79693 0.93576 0.88595 0.93732 0.91415 0.89212 0.90530 0.87196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.65 8.43 71.98 0.61 -1.04 16 2 C 0.03 0.52 0.95 -53.99 -0.05 0.47 16 3 C -0.14 -2.07 8.43 71.98 0.61 -1.47 16 4 C -0.14 -2.10 8.43 71.98 0.61 -1.50 16 5 C -0.04 -1.11 11.77 31.12 0.37 -0.75 16 6 C -0.27 -8.89 13.61 30.01 0.41 -8.48 16 7 C 0.62 24.18 7.65 85.49 0.65 24.84 16 8 O -0.58 -26.81 17.09 -4.08 -0.07 -26.88 16 9 N -0.68 -23.74 5.43 -470.75 -2.56 -26.29 16 10 C 0.13 4.65 5.08 86.38 0.44 5.09 16 11 C 0.16 5.45 0.82 4.13 0.00 5.46 16 12 N -0.72 -31.33 4.98 -300.96 -1.50 -32.83 16 13 C -0.22 -12.05 9.52 84.04 0.80 -11.25 16 14 H 0.05 3.24 8.06 -2.91 -0.02 3.21 16 15 C -0.06 -3.78 5.50 84.86 0.47 -3.32 16 16 N -0.99 -63.96 13.97 21.65 0.30 -63.65 16 17 Si 0.95 44.63 27.67 68.60 1.90 46.52 16 18 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 19 H -0.30 -14.82 7.11 99.48 0.71 -14.11 16 20 H -0.25 -10.05 6.61 99.48 0.66 -9.39 16 21 C -0.15 -4.77 7.29 31.18 0.23 -4.54 16 22 C -0.12 -3.05 8.00 31.18 0.25 -2.80 16 23 C -0.13 -3.10 6.98 31.12 0.22 -2.88 16 24 H 0.06 0.77 8.14 -2.38 -0.02 0.75 16 25 H 0.10 0.66 8.14 -2.39 -0.02 0.64 16 26 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 27 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 28 H 0.10 0.87 8.14 -2.39 -0.02 0.85 16 29 H 0.06 0.93 8.14 -2.38 -0.02 0.91 16 30 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 31 H 0.10 0.87 8.14 -2.39 -0.02 0.85 16 32 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 33 H 0.41 12.39 8.19 -92.71 -0.76 11.63 16 34 H 0.08 2.65 8.01 -2.39 -0.02 2.63 16 35 H 0.03 1.50 7.80 -2.39 -0.02 1.48 16 36 H 0.37 15.10 5.80 -92.71 -0.54 14.56 16 37 H 0.26 15.87 8.31 -92.71 -0.77 15.10 16 38 H 0.10 2.60 8.01 -2.38 -0.02 2.58 16 39 H 0.04 1.73 7.86 -2.38 -0.02 1.71 16 40 H 0.07 1.93 8.14 -2.38 -0.02 1.91 16 41 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 42 H 0.08 1.74 8.09 -2.39 -0.02 1.72 16 43 H 0.11 2.18 8.10 -2.39 -0.02 2.16 16 Total: -1.00 -76.18 360.23 3.33 -72.85 By element: Atomic # 1 Polarization: 32.81 SS G_CDS: -0.35 Total: 32.46 kcal Atomic # 6 Polarization: -7.78 SS G_CDS: 5.60 Total: -2.18 kcal Atomic # 7 Polarization: -119.02 SS G_CDS: -3.75 Total: -122.77 kcal Atomic # 8 Polarization: -26.81 SS G_CDS: -0.07 Total: -26.88 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 1.90 Total: 46.52 kcal Total: -76.18 3.33 -72.85 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724785709.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.588 kcal (2) G-P(sol) polarization free energy of solvation -76.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.846 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds