Wall clock time and date at job start Tue Mar 31 2020 00:03:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17395 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 C 1.53001 * 109.47017 * 46.67935 * 3 2 1 5 5 C 1.53003 * 109.47154 * 180.02562 * 4 3 2 6 6 C 1.50701 * 109.47040 * 180.02562 * 5 4 3 7 7 O 1.21275 * 120.00481 * 359.97438 * 6 5 4 8 8 N 1.34777 * 119.99480 * 179.97438 * 6 5 4 9 9 C 1.46500 * 119.99896 * 179.97438 * 8 6 5 10 10 H 1.09008 * 110.88563 * 34.29767 * 9 8 6 11 11 C 1.54907 * 111.00596 * 270.41968 * 9 8 6 12 12 N 1.47426 * 104.83164 * 278.93241 * 11 9 8 13 13 C 1.36938 * 125.64880 * 155.90395 * 12 11 9 14 14 H 1.07994 * 119.99848 * 342.04639 * 13 12 11 15 15 C 1.38807 * 119.99800 * 162.03502 * 13 12 11 16 16 N 1.31627 * 119.99920 * 156.34947 * 15 13 12 17 17 Si 1.86803 * 120.00317 * 336.35047 * 15 13 12 18 18 H 1.48496 * 109.46903 * 84.68613 * 17 15 13 19 19 H 1.48498 * 109.47033 * 204.68462 * 17 15 13 20 20 H 1.48492 * 109.47012 * 324.68391 * 17 15 13 21 21 C 1.47022 * 108.70240 * 335.87166 * 12 11 9 22 22 C 1.54428 * 107.28324 * 1.05883 * 21 12 11 23 23 C 1.53001 * 110.72726 * 263.85117 * 22 21 12 24 24 C 1.52995 * 110.76254 * 140.54053 * 22 21 12 25 25 H 4.44648 * 5.63439 * 180.02562 * 4 1 2 26 26 H 1.09003 * 109.47198 * 286.68633 * 3 2 1 27 27 H 1.08999 * 109.47169 * 166.67959 * 3 2 1 28 28 H 1.08999 * 109.47581 * 299.99676 * 4 3 2 29 29 H 1.09003 * 109.47300 * 60.00185 * 4 3 2 30 30 H 1.09008 * 109.46992 * 300.00204 * 5 4 3 31 31 H 1.08993 * 109.47129 * 59.99777 * 5 4 3 32 32 H 0.97002 * 120.00422 * 359.97438 * 8 6 5 33 33 H 1.08995 * 110.36915 * 37.77514 * 11 9 8 34 34 H 1.09007 * 110.36815 * 159.98590 * 11 9 8 35 35 H 0.96991 * 120.00063 * 180.02562 * 16 15 13 36 36 H 1.09000 * 109.88558 * 120.47453 * 21 12 11 37 37 H 1.09001 * 109.88116 * 241.48622 * 21 12 11 38 38 H 1.08991 * 109.47475 * 173.46532 * 23 22 21 39 39 H 1.09001 * 109.46401 * 293.46626 * 23 22 21 40 40 H 1.08998 * 109.47323 * 53.46148 * 23 22 21 41 41 H 1.09001 * 109.47703 * 306.51362 * 24 22 21 42 42 H 1.09002 * 109.46861 * 66.51356 * 24 22 21 43 43 H 1.09004 * 109.47457 * 186.51356 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 6 3.1564 -0.9888 -1.0495 5 6 4.6864 -0.9886 -1.0491 6 6 5.1891 -1.9627 -2.0832 7 8 4.4014 -2.5952 -2.7541 8 7 6.5143 -2.1310 -2.2624 9 6 7.0031 -3.0783 -3.2673 10 1 6.3394 -3.1049 -4.1316 11 6 7.1790 -4.4919 -2.6586 12 7 8.4795 -4.4454 -1.9659 13 6 8.8582 -5.2498 -0.9244 14 1 8.1117 -5.7844 -0.3559 15 6 10.2017 -5.3781 -0.5996 16 7 10.5532 -5.7369 0.6171 17 14 11.5107 -5.0415 -1.8890 18 1 11.8000 -3.5857 -1.9324 19 1 12.7499 -5.7823 -1.5413 20 1 11.0229 -5.4892 -3.2181 21 6 9.3028 -3.3929 -2.5790 22 6 8.4561 -2.7381 -3.6922 23 6 8.7806 -3.3559 -5.0537 24 6 8.6719 -1.2237 -3.7179 25 1 -1.0499 -0.0001 -0.0004 26 1 3.0094 -0.2943 0.9844 27 1 3.0088 1.0008 -0.2368 28 1 2.7936 -1.9890 -0.8127 29 1 2.7929 -0.6940 -2.0339 30 1 5.0497 0.0116 -1.2856 31 1 5.0495 -1.2836 -0.0646 32 1 7.1444 -1.6248 -1.7260 33 1 6.3785 -4.7018 -1.9492 34 1 7.1936 -5.2451 -3.4465 35 1 11.4919 -5.8262 0.8442 36 1 9.5700 -2.6476 -1.8299 37 1 10.2057 -3.8298 -3.0055 38 1 8.0937 -2.9640 -5.8037 39 1 9.8042 -3.1047 -5.3319 40 1 8.6754 -4.4393 -4.9955 41 1 8.4905 -0.8137 -2.7244 42 1 9.6972 -1.0079 -4.0183 43 1 7.9817 -0.7703 -4.4295 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001725282455.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:03:27 Heat of formation + Delta-G solvation = 30.881520 kcal Electronic energy + Delta-G solvation = -22089.475964 eV Core-core repulsion = 18943.603929 eV Total energy + Delta-G solvation = -3145.872035 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.03874 -38.34222 -35.66930 -33.97405 -33.11285 -32.35083 -31.40632 -28.92064 -27.78640 -26.79128 -25.95017 -23.76830 -22.30769 -20.66699 -19.87420 -19.03630 -18.31873 -17.16583 -16.60537 -16.06081 -15.84059 -15.21868 -14.57693 -14.37728 -14.09375 -13.84057 -13.56924 -13.28178 -13.10850 -12.83864 -12.59757 -12.40312 -12.25712 -12.04943 -11.67050 -11.60070 -11.50284 -11.18437 -11.06893 -10.86040 -10.76753 -10.46496 -10.36360 -10.26712 -10.23474 -9.80073 -9.62081 -9.31845 -8.84206 -8.52566 -7.05653 -5.96354 -3.24617 2.65022 2.69690 2.87130 3.31826 3.42785 3.46065 3.49329 4.21858 4.52999 4.70521 4.78771 4.89191 4.91108 4.99218 5.11201 5.15323 5.34282 5.37215 5.42036 5.48015 5.54689 5.55570 5.66993 5.78230 5.86754 5.90137 5.96957 6.02184 6.05432 6.16309 6.18927 6.23508 6.37234 6.39929 6.54411 6.61471 6.73298 6.92418 7.47430 7.67960 7.80260 8.29842 8.47845 8.82787 9.67952 10.16500 11.20200 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.021923 B = 0.004214 C = 0.003809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1276.893700 B = 6642.592135 C = 7349.067960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.181 4.181 3 C -0.015 4.015 4 C -0.097 4.097 5 C -0.142 4.142 6 C 0.513 3.487 7 O -0.549 6.549 8 N -0.707 5.707 9 C 0.140 3.860 10 H 0.095 0.905 11 C 0.125 3.875 12 N -0.606 5.606 13 C -0.239 4.239 14 H 0.092 0.908 15 C 0.021 3.979 16 N -0.907 5.907 17 Si 0.886 3.114 18 H -0.287 1.287 19 H -0.305 1.305 20 H -0.279 1.279 21 C 0.127 3.873 22 C -0.087 4.087 23 C -0.132 4.132 24 C -0.131 4.131 25 H 0.215 0.785 26 H 0.089 0.911 27 H 0.086 0.914 28 H 0.075 0.925 29 H 0.072 0.928 30 H 0.092 0.908 31 H 0.097 0.903 32 H 0.401 0.599 33 H 0.052 0.948 34 H 0.033 0.967 35 H 0.263 0.737 36 H 0.039 0.961 37 H 0.029 0.971 38 H 0.055 0.945 39 H 0.057 0.943 40 H 0.063 0.937 41 H 0.055 0.945 42 H 0.057 0.943 43 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.483 13.908 -5.859 18.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.181 4.181 3 C -0.052 4.052 4 C -0.135 4.135 5 C -0.182 4.182 6 C 0.300 3.700 7 O -0.427 6.427 8 N -0.358 5.358 9 C 0.034 3.966 10 H 0.112 0.888 11 C -0.002 4.002 12 N -0.333 5.333 13 C -0.366 4.366 14 H 0.109 0.891 15 C -0.177 4.177 16 N -0.551 5.551 17 Si 0.719 3.281 18 H -0.215 1.215 19 H -0.234 1.234 20 H -0.206 1.206 21 C 0.002 3.998 22 C -0.088 4.088 23 C -0.190 4.190 24 C -0.189 4.189 25 H 0.232 0.768 26 H 0.107 0.893 27 H 0.105 0.895 28 H 0.093 0.907 29 H 0.091 0.909 30 H 0.111 0.889 31 H 0.116 0.884 32 H 0.237 0.763 33 H 0.070 0.930 34 H 0.051 0.949 35 H 0.072 0.928 36 H 0.057 0.943 37 H 0.046 0.954 38 H 0.074 0.926 39 H 0.076 0.924 40 H 0.082 0.918 41 H 0.074 0.926 42 H 0.076 0.924 43 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -10.882 13.337 -6.142 18.276 hybrid contribution 1.137 0.242 -0.331 1.208 sum -9.745 13.579 -6.473 17.924 Atomic orbital electron populations 1.24883 0.95990 1.01278 1.01269 1.23154 0.94622 1.00170 1.00171 1.18802 0.84766 1.00830 1.00808 1.21256 0.93154 0.99994 0.99137 1.21675 0.97165 0.99683 0.99676 1.20562 0.82262 0.83194 0.84023 1.90681 1.55372 1.48536 1.48083 1.45895 1.06756 1.43366 1.39768 1.22142 0.93752 0.89821 0.90891 0.88755 1.22004 0.89562 0.93212 0.95407 1.44755 1.12666 1.37808 1.38078 1.18645 0.92406 1.22211 1.03346 0.89077 1.24947 0.96692 0.99692 0.96382 1.69857 1.16837 1.51444 1.16985 0.86916 0.81369 0.76971 0.82893 1.21457 1.23369 1.20560 1.21804 0.93758 0.91288 0.92907 1.21877 0.94842 0.95734 0.96379 1.21731 1.01146 1.01493 0.94641 1.21716 1.01571 0.94100 1.01532 0.76775 0.89318 0.89530 0.90665 0.90887 0.88923 0.88441 0.76307 0.93008 0.94937 0.92753 0.94322 0.95359 0.92620 0.92413 0.91816 0.92576 0.92424 0.92520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -2.11 19.25 29.55 0.57 -1.54 16 2 C -0.18 -1.93 13.34 -37.12 -0.50 -2.43 16 3 C -0.02 -0.14 5.70 -29.52 -0.17 -0.30 16 4 C -0.10 -1.03 4.46 -26.73 -0.12 -1.15 16 5 C -0.14 -1.44 5.70 -27.88 -0.16 -1.60 16 6 C 0.51 7.43 7.83 -10.98 -0.09 7.34 16 7 O -0.55 -9.90 15.67 5.56 0.09 -9.82 16 8 N -0.71 -10.30 4.62 -51.73 -0.24 -10.54 16 9 C 0.14 2.29 2.61 -65.78 -0.17 2.11 16 10 H 0.09 1.53 7.53 -51.92 -0.39 1.14 16 11 C 0.12 2.53 6.62 -2.53 -0.02 2.51 16 12 N -0.61 -14.30 3.21 -170.01 -0.55 -14.84 16 13 C -0.24 -6.72 10.56 -15.06 -0.16 -6.88 16 14 H 0.09 2.75 8.06 -52.49 -0.42 2.32 16 15 C 0.02 0.62 5.43 -17.43 -0.09 0.52 16 16 N -0.91 -27.81 13.97 55.49 0.78 -27.04 16 17 Si 0.89 22.57 24.39 -169.99 -4.15 18.42 16 18 H -0.29 -6.99 6.84 56.52 0.39 -6.61 16 19 H -0.31 -7.92 7.11 56.52 0.40 -7.52 16 20 H -0.28 -7.01 6.87 56.52 0.39 -6.62 16 21 C 0.13 2.64 4.33 -3.01 -0.01 2.63 16 22 C -0.09 -1.37 0.81 -152.62 -0.12 -1.50 16 23 C -0.13 -1.92 8.41 37.16 0.31 -1.61 16 24 C -0.13 -1.65 8.08 37.15 0.30 -1.35 16 25 H 0.22 1.34 7.80 -54.09 -0.42 0.92 16 26 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.07 0.93 8.10 -51.93 -0.42 0.51 16 29 H 0.07 0.84 8.10 -51.93 -0.42 0.42 16 30 H 0.09 0.70 8.14 -51.92 -0.42 0.28 16 31 H 0.10 0.91 8.14 -51.93 -0.42 0.48 16 32 H 0.40 5.32 7.03 -40.82 -0.29 5.03 16 33 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 34 H 0.03 0.66 7.81 -51.93 -0.41 0.25 16 35 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 36 H 0.04 0.82 7.77 -51.93 -0.40 0.42 16 37 H 0.03 0.65 3.22 -51.93 -0.17 0.49 16 38 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 39 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 40 H 0.06 1.02 7.58 -51.93 -0.39 0.63 16 41 H 0.06 0.66 6.42 -51.93 -0.33 0.33 16 42 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 43 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 LS Contribution 346.82 15.07 5.23 5.23 Total: -1.00 -33.50 346.82 -6.30 -39.80 By element: Atomic # 1 Polarization: 9.06 SS G_CDS: -7.04 Total: 2.02 kcal Atomic # 6 Polarization: -2.82 SS G_CDS: -0.42 Total: -3.24 kcal Atomic # 7 Polarization: -52.40 SS G_CDS: -0.01 Total: -52.41 kcal Atomic # 8 Polarization: -9.90 SS G_CDS: 0.09 Total: -9.82 kcal Atomic # 14 Polarization: 22.57 SS G_CDS: -4.15 Total: 18.42 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -33.50 -6.30 -39.80 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725282455.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.686 kcal (2) G-P(sol) polarization free energy of solvation -33.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.805 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds