Wall clock time and date at job start Tue Mar 31 2020 00:03:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17395 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 C 1.53001 * 109.47017 * 46.67935 * 3 2 1 5 5 C 1.53003 * 109.47154 * 180.02562 * 4 3 2 6 6 C 1.50701 * 109.47040 * 180.02562 * 5 4 3 7 7 O 1.21275 * 120.00481 * 359.97438 * 6 5 4 8 8 N 1.34777 * 119.99480 * 179.97438 * 6 5 4 9 9 C 1.46500 * 119.99896 * 179.97438 * 8 6 5 10 10 H 1.09008 * 110.88563 * 34.29767 * 9 8 6 11 11 C 1.54907 * 111.00596 * 270.41968 * 9 8 6 12 12 N 1.47426 * 104.83164 * 278.93241 * 11 9 8 13 13 C 1.36938 * 125.64880 * 155.90395 * 12 11 9 14 14 H 1.07994 * 119.99848 * 342.04639 * 13 12 11 15 15 C 1.38807 * 119.99800 * 162.03502 * 13 12 11 16 16 N 1.31627 * 119.99920 * 156.34947 * 15 13 12 17 17 Si 1.86803 * 120.00317 * 336.35047 * 15 13 12 18 18 H 1.48496 * 109.46903 * 84.68613 * 17 15 13 19 19 H 1.48498 * 109.47033 * 204.68462 * 17 15 13 20 20 H 1.48492 * 109.47012 * 324.68391 * 17 15 13 21 21 C 1.47022 * 108.70240 * 335.87166 * 12 11 9 22 22 C 1.54428 * 107.28324 * 1.05883 * 21 12 11 23 23 C 1.53001 * 110.72726 * 263.85117 * 22 21 12 24 24 C 1.52995 * 110.76254 * 140.54053 * 22 21 12 25 25 H 4.44648 * 5.63439 * 180.02562 * 4 1 2 26 26 H 1.09003 * 109.47198 * 286.68633 * 3 2 1 27 27 H 1.08999 * 109.47169 * 166.67959 * 3 2 1 28 28 H 1.08999 * 109.47581 * 299.99676 * 4 3 2 29 29 H 1.09003 * 109.47300 * 60.00185 * 4 3 2 30 30 H 1.09008 * 109.46992 * 300.00204 * 5 4 3 31 31 H 1.08993 * 109.47129 * 59.99777 * 5 4 3 32 32 H 0.97002 * 120.00422 * 359.97438 * 8 6 5 33 33 H 1.08995 * 110.36915 * 37.77514 * 11 9 8 34 34 H 1.09007 * 110.36815 * 159.98590 * 11 9 8 35 35 H 0.96991 * 120.00063 * 180.02562 * 16 15 13 36 36 H 1.09000 * 109.88558 * 120.47453 * 21 12 11 37 37 H 1.09001 * 109.88116 * 241.48622 * 21 12 11 38 38 H 1.08991 * 109.47475 * 173.46532 * 23 22 21 39 39 H 1.09001 * 109.46401 * 293.46626 * 23 22 21 40 40 H 1.08998 * 109.47323 * 53.46148 * 23 22 21 41 41 H 1.09001 * 109.47703 * 306.51362 * 24 22 21 42 42 H 1.09002 * 109.46861 * 66.51356 * 24 22 21 43 43 H 1.09004 * 109.47457 * 186.51356 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 6 3.1564 -0.9888 -1.0495 5 6 4.6864 -0.9886 -1.0491 6 6 5.1891 -1.9627 -2.0832 7 8 4.4014 -2.5952 -2.7541 8 7 6.5143 -2.1310 -2.2624 9 6 7.0031 -3.0783 -3.2673 10 1 6.3394 -3.1049 -4.1316 11 6 7.1790 -4.4919 -2.6586 12 7 8.4795 -4.4454 -1.9659 13 6 8.8582 -5.2498 -0.9244 14 1 8.1117 -5.7844 -0.3559 15 6 10.2017 -5.3781 -0.5996 16 7 10.5532 -5.7369 0.6171 17 14 11.5107 -5.0415 -1.8890 18 1 11.8000 -3.5857 -1.9324 19 1 12.7499 -5.7823 -1.5413 20 1 11.0229 -5.4892 -3.2181 21 6 9.3028 -3.3929 -2.5790 22 6 8.4561 -2.7381 -3.6922 23 6 8.7806 -3.3559 -5.0537 24 6 8.6719 -1.2237 -3.7179 25 1 -1.0499 -0.0001 -0.0004 26 1 3.0094 -0.2943 0.9844 27 1 3.0088 1.0008 -0.2368 28 1 2.7936 -1.9890 -0.8127 29 1 2.7929 -0.6940 -2.0339 30 1 5.0497 0.0116 -1.2856 31 1 5.0495 -1.2836 -0.0646 32 1 7.1444 -1.6248 -1.7260 33 1 6.3785 -4.7018 -1.9492 34 1 7.1936 -5.2451 -3.4465 35 1 11.4919 -5.8262 0.8442 36 1 9.5700 -2.6476 -1.8299 37 1 10.2057 -3.8298 -3.0055 38 1 8.0937 -2.9640 -5.8037 39 1 9.8042 -3.1047 -5.3319 40 1 8.6754 -4.4393 -4.9955 41 1 8.4905 -0.8137 -2.7244 42 1 9.6972 -1.0079 -4.0183 43 1 7.9817 -0.7703 -4.4295 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725282455.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:03:27 Heat of formation + Delta-G solvation = 8.521320 kcal Electronic energy + Delta-G solvation = -22090.445575 eV Core-core repulsion = 18943.603929 eV Total energy + Delta-G solvation = -3146.841646 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.34008 -39.67792 -36.48541 -35.69857 -34.44627 -33.38058 -33.15426 -30.30998 -28.80095 -27.91885 -27.62813 -25.30568 -23.42204 -22.23206 -21.10806 -20.33740 -19.20453 -18.94462 -17.78218 -17.44352 -16.99263 -16.82521 -15.78160 -15.53740 -15.44425 -15.29366 -14.91388 -14.65454 -14.40243 -14.17646 -13.74637 -13.61033 -13.38420 -13.34970 -13.18562 -12.94535 -12.88698 -12.53847 -12.45394 -12.32387 -11.90547 -11.83462 -11.74680 -11.65239 -11.18050 -11.14901 -10.94901 -10.78067 -10.76839 -10.01762 -9.05388 -8.20027 -5.44911 1.27609 1.38008 1.47808 1.72567 1.87348 1.94914 2.32144 2.39210 3.00884 3.30149 3.42993 3.54830 3.74695 3.82714 3.94469 4.11745 4.20531 4.26727 4.34149 4.51528 4.54161 4.68061 4.70512 4.73686 4.77116 4.83180 4.83644 4.85419 4.93818 5.02211 5.04314 5.18329 5.22901 5.23442 5.29968 5.35173 5.44393 5.61073 5.65410 6.07699 6.63683 6.74320 6.74780 7.33881 7.51825 8.07945 9.00334 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.021923 B = 0.004214 C = 0.003809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1276.893700 B = 6642.592135 C = 7349.067960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.217 4.217 3 C -0.011 4.011 4 C -0.091 4.091 5 C -0.133 4.133 6 C 0.508 3.492 7 O -0.589 6.589 8 N -0.704 5.704 9 C 0.153 3.847 10 H 0.103 0.897 11 C 0.121 3.879 12 N -0.619 5.619 13 C -0.234 4.234 14 H 0.052 0.948 15 C -0.034 4.034 16 N -0.954 5.954 17 Si 0.952 3.048 18 H -0.265 1.265 19 H -0.313 1.313 20 H -0.275 1.275 21 C 0.120 3.880 22 C -0.074 4.074 23 C -0.134 4.134 24 C -0.128 4.128 25 H 0.241 0.759 26 H 0.099 0.901 27 H 0.110 0.890 28 H 0.046 0.954 29 H 0.061 0.939 30 H 0.131 0.869 31 H 0.110 0.890 32 H 0.410 0.590 33 H 0.028 0.972 34 H 0.032 0.968 35 H 0.263 0.737 36 H 0.036 0.964 37 H 0.016 0.984 38 H 0.084 0.916 39 H 0.068 0.932 40 H 0.040 0.960 41 H 0.063 0.937 42 H 0.068 0.932 43 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.282 16.944 -7.494 21.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.217 4.217 3 C -0.048 4.048 4 C -0.129 4.129 5 C -0.172 4.172 6 C 0.297 3.703 7 O -0.469 6.469 8 N -0.355 5.355 9 C 0.046 3.954 10 H 0.121 0.879 11 C -0.005 4.005 12 N -0.345 5.345 13 C -0.363 4.363 14 H 0.070 0.930 15 C -0.228 4.228 16 N -0.601 5.601 17 Si 0.783 3.217 18 H -0.191 1.191 19 H -0.242 1.242 20 H -0.201 1.201 21 C -0.004 4.004 22 C -0.076 4.076 23 C -0.191 4.191 24 C -0.185 4.185 25 H 0.257 0.743 26 H 0.118 0.882 27 H 0.128 0.872 28 H 0.065 0.935 29 H 0.079 0.921 30 H 0.149 0.851 31 H 0.128 0.872 32 H 0.247 0.753 33 H 0.046 0.954 34 H 0.050 0.950 35 H 0.072 0.928 36 H 0.054 0.946 37 H 0.034 0.966 38 H 0.103 0.897 39 H 0.087 0.913 40 H 0.060 0.940 41 H 0.082 0.918 42 H 0.087 0.913 43 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -10.691 16.416 -7.796 21.085 hybrid contribution 0.927 -0.776 0.220 1.229 sum -9.764 15.640 -7.575 19.933 Atomic orbital electron populations 1.25704 0.97067 1.00507 1.00416 1.23818 0.95815 1.00996 1.01040 1.18842 0.83904 1.01416 1.00595 1.21147 0.93546 0.99044 0.99192 1.21709 0.96546 1.00315 0.98624 1.21357 0.81721 0.83147 0.84073 1.90667 1.56255 1.50218 1.49803 1.45894 1.07188 1.42830 1.39560 1.21926 0.94752 0.87615 0.91102 0.87918 1.22118 0.87371 0.96400 0.94654 1.44774 1.14206 1.37983 1.37551 1.18525 0.91761 1.22073 1.03933 0.92986 1.25561 0.98741 1.00609 0.97938 1.69979 1.17206 1.53981 1.18887 0.85849 0.77987 0.77911 0.79976 1.19095 1.24198 1.20120 1.21977 0.93833 0.90345 0.94213 1.21871 0.92586 0.97940 0.95160 1.21769 1.02714 1.00108 0.94521 1.21724 1.02944 0.91003 1.02858 0.74293 0.88248 0.87160 0.93466 0.92057 0.85117 0.87205 0.75287 0.95396 0.95003 0.92826 0.94645 0.96629 0.89736 0.91281 0.94048 0.91795 0.91347 0.90256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -4.02 19.25 74.32 1.43 -2.59 16 2 C -0.22 -4.38 13.34 31.13 0.42 -3.97 16 3 C -0.01 -0.18 5.70 28.79 0.16 -0.01 16 4 C -0.09 -1.83 4.46 30.60 0.14 -1.69 16 5 C -0.13 -2.37 5.70 29.85 0.17 -2.20 16 6 C 0.51 13.98 7.83 87.66 0.69 14.67 16 7 O -0.59 -21.07 15.67 -3.01 -0.05 -21.12 16 8 N -0.70 -19.10 4.62 -435.96 -2.01 -21.11 16 9 C 0.15 4.73 2.61 46.38 0.12 4.86 16 10 H 0.10 3.11 7.53 -2.38 -0.02 3.09 16 11 C 0.12 4.94 6.62 86.85 0.57 5.52 16 12 N -0.62 -29.35 3.21 -691.79 -2.22 -31.57 16 13 C -0.23 -13.60 10.56 84.03 0.89 -12.71 16 14 H 0.05 3.34 8.06 -2.91 -0.02 3.32 16 15 C -0.03 -1.99 5.43 84.86 0.46 -1.52 16 16 N -0.95 -60.15 13.97 21.65 0.30 -59.85 16 17 Si 0.95 46.93 24.39 68.60 1.67 48.60 16 18 H -0.26 -11.99 6.84 99.48 0.68 -11.31 16 19 H -0.31 -15.69 7.11 99.48 0.71 -14.99 16 20 H -0.27 -13.20 6.87 99.48 0.68 -12.52 16 21 C 0.12 4.79 4.33 86.77 0.38 5.16 16 22 C -0.07 -2.13 0.81 -50.96 -0.04 -2.17 16 23 C -0.13 -3.44 8.41 71.98 0.61 -2.84 16 24 C -0.13 -2.63 8.08 71.98 0.58 -2.04 16 25 H 0.24 2.59 7.80 -4.42 -0.03 2.55 16 26 H 0.10 1.32 8.14 -2.39 -0.02 1.31 16 27 H 0.11 1.19 8.14 -2.39 -0.02 1.17 16 28 H 0.05 1.19 8.10 -2.39 -0.02 1.17 16 29 H 0.06 1.36 8.10 -2.39 -0.02 1.34 16 30 H 0.13 1.40 8.14 -2.38 -0.02 1.38 16 31 H 0.11 1.76 8.14 -2.39 -0.02 1.74 16 32 H 0.41 9.74 7.03 -92.71 -0.65 9.09 16 33 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 34 H 0.03 1.31 7.81 -2.38 -0.02 1.29 16 35 H 0.26 15.71 8.31 -92.71 -0.77 14.94 16 36 H 0.04 1.43 7.77 -2.39 -0.02 1.42 16 37 H 0.02 0.69 3.22 -2.39 -0.01 0.69 16 38 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 39 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 40 H 0.04 1.24 7.58 -2.39 -0.02 1.22 16 41 H 0.06 1.22 6.42 -2.39 -0.02 1.21 16 42 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 43 H 0.08 1.33 8.14 -2.38 -0.02 1.31 16 Total: -1.00 -75.90 346.82 4.54 -71.36 By element: Atomic # 1 Polarization: 14.95 SS G_CDS: 0.28 Total: 15.24 kcal Atomic # 6 Polarization: -8.12 SS G_CDS: 6.57 Total: -1.55 kcal Atomic # 7 Polarization: -108.60 SS G_CDS: -3.93 Total: -112.53 kcal Atomic # 8 Polarization: -21.07 SS G_CDS: -0.05 Total: -21.12 kcal Atomic # 14 Polarization: 46.93 SS G_CDS: 1.67 Total: 48.60 kcal Total: -75.90 4.54 -71.36 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725282455.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.882 kcal (2) G-P(sol) polarization free energy of solvation -75.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.361 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds