Wall clock time and date at job start Tue Mar 31 2020 00:03:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17405 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 C 1.53004 * 109.47348 * 325.63134 * 3 2 1 5 5 C 1.52995 * 109.47253 * 180.02562 * 4 3 2 6 6 C 1.50698 * 109.47418 * 180.02562 * 5 4 3 7 7 O 1.21286 * 119.99789 * 359.97438 * 6 5 4 8 8 N 1.34773 * 120.00032 * 180.02562 * 6 5 4 9 9 C 1.46504 * 119.99779 * 179.97438 * 8 6 5 10 10 H 1.09002 * 110.88589 * 325.69654 * 9 8 6 11 11 C 1.54906 * 111.00267 * 89.57865 * 9 8 6 12 12 N 1.47471 * 104.81210 * 81.13587 * 11 9 8 13 13 C 1.36936 * 125.62644 * 204.04433 * 12 11 9 14 14 H 1.08001 * 119.99967 * 180.02562 * 13 12 11 15 15 C 1.38816 * 120.00461 * 0.03195 * 13 12 11 16 16 N 1.31616 * 119.99418 * 359.97438 * 15 13 12 17 17 Si 1.86799 * 120.00126 * 179.97438 * 15 13 12 18 18 H 1.48496 * 109.47218 * 59.99220 * 17 15 13 19 19 H 1.48504 * 109.46785 * 179.97438 * 17 15 13 20 20 H 1.48505 * 109.46751 * 299.99456 * 17 15 13 21 21 C 1.47017 * 108.71970 * 24.07007 * 12 11 9 22 22 C 1.54315 * 107.27451 * 358.97486 * 21 12 11 23 23 C 1.53005 * 110.72074 * 219.44474 * 22 21 12 24 24 C 1.53004 * 110.72134 * 96.17059 * 22 21 12 25 25 H 4.44653 * 5.63299 * 179.97438 * 4 1 2 26 26 H 1.09002 * 109.46764 * 205.63650 * 3 2 1 27 27 H 1.08998 * 109.47239 * 85.63575 * 3 2 1 28 28 H 1.09002 * 109.46767 * 60.00518 * 4 3 2 29 29 H 1.08998 * 109.47311 * 300.00397 * 4 3 2 30 30 H 1.09003 * 109.47197 * 60.00072 * 5 4 3 31 31 H 1.08998 * 109.47227 * 300.00375 * 5 4 3 32 32 H 0.96998 * 120.00388 * 359.97438 * 8 6 5 33 33 H 1.09008 * 110.36753 * 199.94188 * 11 9 8 34 34 H 1.09001 * 110.37094 * 322.26071 * 11 9 8 35 35 H 0.97005 * 119.99622 * 180.02562 * 16 15 13 36 36 H 1.08998 * 109.88206 * 239.55467 * 21 12 11 37 37 H 1.09004 * 110.01118 * 118.46560 * 21 12 11 38 38 H 1.08999 * 109.46995 * 173.52094 * 23 22 21 39 39 H 1.09000 * 109.46730 * 293.52280 * 23 22 21 40 40 H 1.08996 * 109.47047 * 53.52116 * 23 22 21 41 41 H 1.08993 * 109.47007 * 306.47955 * 24 22 21 42 42 H 1.09004 * 109.46967 * 66.48214 * 24 22 21 43 43 H 1.08997 * 109.47110 * 186.47557 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1566 -1.1898 0.8143 5 6 4.6866 -1.1887 0.8148 6 6 5.1895 -2.3616 1.6164 7 8 4.4017 -3.1231 2.1364 8 7 6.5147 -2.5637 1.7561 9 6 7.0036 -3.7036 2.5358 10 1 6.3396 -3.9143 3.3742 11 6 7.1803 -4.9545 1.6394 12 7 8.4823 -4.7610 0.9745 13 6 8.8627 -5.3251 -0.2139 14 1 9.8426 -5.1207 -0.6194 15 6 7.9889 -6.1595 -0.8975 16 7 6.7949 -6.4088 -0.4030 17 14 8.5077 -6.9284 -2.5189 18 1 9.7131 -7.7689 -2.3049 19 1 7.4032 -7.7716 -3.0426 20 1 8.8194 -5.8560 -3.4978 21 6 9.3041 -3.8629 1.7987 22 6 8.4563 -3.4614 3.0240 23 6 8.6717 -1.9870 3.3717 24 6 8.7804 -4.3549 4.2229 25 1 -1.0498 -0.0002 0.0004 26 1 3.0089 0.9274 0.4446 27 1 3.0094 -0.0774 -1.0247 28 1 2.7938 -2.1165 0.3697 29 1 2.7932 -1.1118 1.8390 30 1 5.0491 -0.2620 1.2597 31 1 5.0503 -1.2665 -0.2097 32 1 7.1447 -1.9544 1.3405 33 1 7.1963 -5.8585 2.2484 34 1 6.3805 -5.0080 0.9007 35 1 6.1844 -6.9922 -0.8805 36 1 9.5715 -2.9750 1.2259 37 1 10.2071 -4.3787 2.1257 38 1 7.9811 -1.6958 4.1631 39 1 9.6969 -1.8401 3.7117 40 1 8.4907 -1.3751 2.4881 41 1 8.6755 -5.4010 3.9354 42 1 9.8038 -4.1685 4.5488 43 1 8.0930 -4.1317 5.0388 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001725282457.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:03:30 Heat of formation + Delta-G solvation = 25.506206 kcal Electronic energy + Delta-G solvation = -22175.670142 eV Core-core repulsion = 19029.565016 eV Total energy + Delta-G solvation = -3146.105126 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.68199 -37.99134 -35.50734 -33.78836 -32.95281 -32.19504 -30.68755 -28.63061 -27.56624 -26.54984 -25.58838 -23.52348 -22.19235 -20.36357 -19.65193 -18.65340 -18.15329 -16.75560 -16.44051 -15.85118 -15.68233 -14.63439 -14.35995 -14.07300 -13.92593 -13.76006 -13.44466 -13.18316 -12.85523 -12.49567 -12.41767 -12.05607 -11.88556 -11.71040 -11.47206 -11.26985 -11.15421 -10.98477 -10.88647 -10.75622 -10.39474 -10.24788 -10.21069 -10.12519 -9.92402 -9.78670 -9.66913 -9.29144 -8.65964 -8.28364 -6.79614 -5.61336 -3.04666 2.75675 2.79630 3.18649 3.40512 3.44977 3.47095 3.73069 4.33635 4.49830 4.98021 5.01849 5.06188 5.15044 5.26084 5.30935 5.49470 5.53538 5.54075 5.61442 5.65648 5.71750 5.82562 5.89389 5.98764 6.04909 6.12167 6.18907 6.20814 6.28434 6.36663 6.44242 6.50295 6.63690 6.72003 6.80525 7.04394 7.52751 7.57515 7.63665 7.90801 8.11170 8.41199 8.80822 9.23622 9.85245 10.49673 11.41010 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.012962 B = 0.005252 C = 0.004046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2159.590236 B = 5330.279581 C = 6918.808678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.179 4.179 3 C -0.015 4.015 4 C -0.098 4.098 5 C -0.140 4.140 6 C 0.512 3.488 7 O -0.546 6.546 8 N -0.704 5.704 9 C 0.124 3.876 10 H 0.085 0.915 11 C 0.146 3.854 12 N -0.601 5.601 13 C -0.226 4.226 14 H 0.075 0.925 15 C -0.008 4.008 16 N -0.917 5.917 17 Si 0.912 3.088 18 H -0.286 1.286 19 H -0.290 1.290 20 H -0.286 1.286 21 C 0.143 3.857 22 C -0.088 4.088 23 C -0.130 4.130 24 C -0.128 4.128 25 H 0.215 0.785 26 H 0.085 0.915 27 H 0.088 0.912 28 H 0.076 0.924 29 H 0.072 0.928 30 H 0.089 0.911 31 H 0.094 0.906 32 H 0.395 0.605 33 H 0.019 0.981 34 H 0.113 0.887 35 H 0.253 0.747 36 H 0.021 0.979 37 H 0.022 0.978 38 H 0.052 0.948 39 H 0.053 0.947 40 H 0.052 0.948 41 H 0.063 0.937 42 H 0.053 0.947 43 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.768 13.664 4.921 14.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.179 4.179 3 C -0.052 4.052 4 C -0.136 4.136 5 C -0.180 4.180 6 C 0.298 3.702 7 O -0.424 6.424 8 N -0.354 5.354 9 C 0.018 3.982 10 H 0.103 0.897 11 C 0.021 3.979 12 N -0.327 5.327 13 C -0.355 4.355 14 H 0.093 0.907 15 C -0.204 4.204 16 N -0.565 5.565 17 Si 0.743 3.257 18 H -0.213 1.213 19 H -0.216 1.216 20 H -0.212 1.212 21 C 0.017 3.983 22 C -0.089 4.089 23 C -0.187 4.187 24 C -0.186 4.186 25 H 0.232 0.768 26 H 0.104 0.896 27 H 0.106 0.894 28 H 0.094 0.906 29 H 0.091 0.909 30 H 0.107 0.893 31 H 0.113 0.887 32 H 0.230 0.770 33 H 0.036 0.964 34 H 0.130 0.870 35 H 0.064 0.936 36 H 0.039 0.961 37 H 0.040 0.960 38 H 0.071 0.929 39 H 0.072 0.928 40 H 0.071 0.929 41 H 0.082 0.918 42 H 0.072 0.928 43 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -3.402 12.950 5.131 14.339 hybrid contribution 0.508 -0.236 -1.108 1.242 sum -2.894 12.714 4.022 13.646 Atomic orbital electron populations 1.24864 0.95970 1.01305 1.01514 1.23181 0.94642 1.00077 1.00020 1.18810 0.84717 0.99776 1.01872 1.21253 0.93341 0.97929 1.01046 1.21647 0.97059 0.97629 1.01701 1.20444 0.82468 0.86400 0.80920 1.90686 1.55335 1.47547 1.48833 1.45813 1.06458 1.29573 1.53518 1.22484 0.92762 0.88349 0.94564 0.89739 1.22311 0.90809 0.90164 0.94637 1.44462 1.12535 1.54062 1.21630 1.18983 0.99072 1.22095 0.95333 0.90671 1.24787 0.96395 1.00142 0.99092 1.69806 1.07097 1.40677 1.38913 0.86200 0.77230 0.78926 0.83383 1.21272 1.21611 1.21248 1.21394 0.93483 0.93454 0.89929 1.21838 0.95820 0.95145 0.96077 1.21707 1.01038 0.95154 1.00839 1.21686 1.00526 1.00257 0.96141 0.76804 0.89627 0.89411 0.90553 0.90939 0.89276 0.88742 0.77011 0.96359 0.86982 0.93650 0.96147 0.95971 0.92885 0.92822 0.92900 0.91780 0.92763 0.93107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -2.40 19.25 29.55 0.57 -1.83 16 2 C -0.18 -2.15 13.34 -37.12 -0.50 -2.65 16 3 C -0.02 -0.16 5.70 -29.52 -0.17 -0.32 16 4 C -0.10 -1.24 4.46 -26.73 -0.12 -1.36 16 5 C -0.14 -1.73 5.70 -27.89 -0.16 -1.89 16 6 C 0.51 8.89 7.83 -10.99 -0.09 8.80 16 7 O -0.55 -11.74 15.67 5.55 0.09 -11.66 16 8 N -0.70 -12.00 4.62 -51.73 -0.24 -12.24 16 9 C 0.12 2.38 2.61 -65.78 -0.17 2.21 16 10 H 0.08 1.68 7.53 -51.93 -0.39 1.29 16 11 C 0.15 3.60 5.27 -2.50 -0.01 3.59 16 12 N -0.60 -14.94 3.40 -170.04 -0.58 -15.52 16 13 C -0.23 -6.23 10.27 -15.06 -0.15 -6.38 16 14 H 0.08 1.99 7.83 -52.49 -0.41 1.58 16 15 C -0.01 -0.23 5.49 -17.43 -0.10 -0.32 16 16 N -0.92 -27.17 10.09 55.49 0.56 -26.61 16 17 Si 0.91 22.13 29.55 -169.99 -5.02 17.11 16 18 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 19 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 20 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 21 C 0.14 2.85 6.41 -3.07 -0.02 2.83 16 22 C -0.09 -1.44 0.80 -152.67 -0.12 -1.56 16 23 C -0.13 -1.67 8.07 37.16 0.30 -1.37 16 24 C -0.13 -1.95 8.41 37.16 0.31 -1.64 16 25 H 0.22 1.58 7.80 -54.10 -0.42 1.16 16 26 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.09 0.81 8.14 -51.93 -0.42 0.38 16 28 H 0.08 1.15 8.10 -51.93 -0.42 0.72 16 29 H 0.07 0.97 8.10 -51.93 -0.42 0.55 16 30 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 32 H 0.40 5.93 7.03 -40.82 -0.29 5.65 16 33 H 0.02 0.49 7.81 -51.92 -0.41 0.09 16 34 H 0.11 3.21 5.88 -51.93 -0.31 2.91 16 35 H 0.25 7.37 8.31 -40.82 -0.34 7.03 16 36 H 0.02 0.40 7.76 -51.93 -0.40 -0.01 16 37 H 0.02 0.45 7.84 -51.93 -0.41 0.04 16 38 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 39 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.05 0.64 6.41 -51.93 -0.33 0.31 16 41 H 0.06 1.11 7.58 -51.93 -0.39 0.72 16 42 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 43 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 LS Contribution 351.39 15.07 5.30 5.30 Total: -1.00 -32.93 351.39 -7.44 -40.37 By element: Atomic # 1 Polarization: 12.28 SS G_CDS: -7.12 Total: 5.16 kcal Atomic # 6 Polarization: -1.48 SS G_CDS: -0.42 Total: -1.90 kcal Atomic # 7 Polarization: -54.11 SS G_CDS: -0.26 Total: -54.37 kcal Atomic # 8 Polarization: -11.74 SS G_CDS: 0.09 Total: -11.66 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.11 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -32.93 -7.44 -40.37 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725282457.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.872 kcal (2) G-P(sol) polarization free energy of solvation -32.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.366 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds