Wall clock time and date at job start Tue Mar 31 2020 00:03:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17405 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 C 1.53004 * 109.47348 * 325.63134 * 3 2 1 5 5 C 1.52995 * 109.47253 * 180.02562 * 4 3 2 6 6 C 1.50698 * 109.47418 * 180.02562 * 5 4 3 7 7 O 1.21286 * 119.99789 * 359.97438 * 6 5 4 8 8 N 1.34773 * 120.00032 * 180.02562 * 6 5 4 9 9 C 1.46504 * 119.99779 * 179.97438 * 8 6 5 10 10 H 1.09002 * 110.88589 * 325.69654 * 9 8 6 11 11 C 1.54906 * 111.00267 * 89.57865 * 9 8 6 12 12 N 1.47471 * 104.81210 * 81.13587 * 11 9 8 13 13 C 1.36936 * 125.62644 * 204.04433 * 12 11 9 14 14 H 1.08001 * 119.99967 * 180.02562 * 13 12 11 15 15 C 1.38816 * 120.00461 * 0.03195 * 13 12 11 16 16 N 1.31616 * 119.99418 * 359.97438 * 15 13 12 17 17 Si 1.86799 * 120.00126 * 179.97438 * 15 13 12 18 18 H 1.48496 * 109.47218 * 59.99220 * 17 15 13 19 19 H 1.48504 * 109.46785 * 179.97438 * 17 15 13 20 20 H 1.48505 * 109.46751 * 299.99456 * 17 15 13 21 21 C 1.47017 * 108.71970 * 24.07007 * 12 11 9 22 22 C 1.54315 * 107.27451 * 358.97486 * 21 12 11 23 23 C 1.53005 * 110.72074 * 219.44474 * 22 21 12 24 24 C 1.53004 * 110.72134 * 96.17059 * 22 21 12 25 25 H 4.44653 * 5.63299 * 179.97438 * 4 1 2 26 26 H 1.09002 * 109.46764 * 205.63650 * 3 2 1 27 27 H 1.08998 * 109.47239 * 85.63575 * 3 2 1 28 28 H 1.09002 * 109.46767 * 60.00518 * 4 3 2 29 29 H 1.08998 * 109.47311 * 300.00397 * 4 3 2 30 30 H 1.09003 * 109.47197 * 60.00072 * 5 4 3 31 31 H 1.08998 * 109.47227 * 300.00375 * 5 4 3 32 32 H 0.96998 * 120.00388 * 359.97438 * 8 6 5 33 33 H 1.09008 * 110.36753 * 199.94188 * 11 9 8 34 34 H 1.09001 * 110.37094 * 322.26071 * 11 9 8 35 35 H 0.97005 * 119.99622 * 180.02562 * 16 15 13 36 36 H 1.08998 * 109.88206 * 239.55467 * 21 12 11 37 37 H 1.09004 * 110.01118 * 118.46560 * 21 12 11 38 38 H 1.08999 * 109.46995 * 173.52094 * 23 22 21 39 39 H 1.09000 * 109.46730 * 293.52280 * 23 22 21 40 40 H 1.08996 * 109.47047 * 53.52116 * 23 22 21 41 41 H 1.08993 * 109.47007 * 306.47955 * 24 22 21 42 42 H 1.09004 * 109.46967 * 66.48214 * 24 22 21 43 43 H 1.08997 * 109.47110 * 186.47557 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1566 -1.1898 0.8143 5 6 4.6866 -1.1887 0.8148 6 6 5.1895 -2.3616 1.6164 7 8 4.4017 -3.1231 2.1364 8 7 6.5147 -2.5637 1.7561 9 6 7.0036 -3.7036 2.5358 10 1 6.3396 -3.9143 3.3742 11 6 7.1803 -4.9545 1.6394 12 7 8.4823 -4.7610 0.9745 13 6 8.8627 -5.3251 -0.2139 14 1 9.8426 -5.1207 -0.6194 15 6 7.9889 -6.1595 -0.8975 16 7 6.7949 -6.4088 -0.4030 17 14 8.5077 -6.9284 -2.5189 18 1 9.7131 -7.7689 -2.3049 19 1 7.4032 -7.7716 -3.0426 20 1 8.8194 -5.8560 -3.4978 21 6 9.3041 -3.8629 1.7987 22 6 8.4563 -3.4614 3.0240 23 6 8.6717 -1.9870 3.3717 24 6 8.7804 -4.3549 4.2229 25 1 -1.0498 -0.0002 0.0004 26 1 3.0089 0.9274 0.4446 27 1 3.0094 -0.0774 -1.0247 28 1 2.7938 -2.1165 0.3697 29 1 2.7932 -1.1118 1.8390 30 1 5.0491 -0.2620 1.2597 31 1 5.0503 -1.2665 -0.2097 32 1 7.1447 -1.9544 1.3405 33 1 7.1963 -5.8585 2.2484 34 1 6.3805 -5.0080 0.9007 35 1 6.1844 -6.9922 -0.8805 36 1 9.5715 -2.9750 1.2259 37 1 10.2071 -4.3787 2.1257 38 1 7.9811 -1.6958 4.1631 39 1 9.6969 -1.8401 3.7117 40 1 8.4907 -1.3751 2.4881 41 1 8.6755 -5.4010 3.9354 42 1 9.8038 -4.1685 4.5488 43 1 8.0930 -4.1317 5.0388 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725282457.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:03:30 Heat of formation + Delta-G solvation = 4.583775 kcal Electronic energy + Delta-G solvation = -22176.577407 eV Core-core repulsion = 19029.565016 eV Total energy + Delta-G solvation = -3147.012391 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.16391 -39.48769 -36.46913 -35.63905 -34.43751 -33.15286 -32.59206 -30.09739 -28.73770 -27.84540 -27.33174 -25.13004 -23.43373 -22.05242 -21.11957 -20.03524 -19.05569 -18.68948 -17.78313 -17.36032 -16.86047 -16.46718 -15.67002 -15.56357 -15.26056 -15.18206 -14.69416 -14.54735 -14.16375 -13.74793 -13.70258 -13.49828 -13.33123 -13.02329 -12.99088 -12.79235 -12.60901 -12.54125 -12.45268 -12.14538 -11.90874 -11.77165 -11.73899 -11.41469 -11.33458 -11.14609 -10.95189 -10.81927 -10.66222 -9.86812 -8.83682 -7.74482 -5.20003 1.44867 1.47971 1.54724 1.80207 1.87627 1.94411 2.42263 2.49762 3.34758 3.55075 3.60283 3.70740 3.87217 3.99543 4.09893 4.11893 4.20619 4.44387 4.53856 4.55674 4.69589 4.72822 4.81121 4.82965 4.85272 4.90955 4.94536 5.06641 5.12900 5.22184 5.22874 5.23049 5.33201 5.35437 5.37138 5.49740 5.55871 5.75297 5.86449 6.32239 6.73654 6.74556 7.10131 7.45171 7.80456 8.44379 9.25601 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.012962 B = 0.005252 C = 0.004046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2159.590236 B = 5330.279581 C = 6918.808678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.217 4.217 3 C -0.009 4.009 4 C -0.092 4.092 5 C -0.128 4.128 6 C 0.502 3.498 7 O -0.596 6.596 8 N -0.696 5.696 9 C 0.136 3.864 10 H 0.075 0.925 11 C 0.154 3.846 12 N -0.617 5.617 13 C -0.234 4.234 14 H 0.085 0.915 15 C -0.068 4.068 16 N -0.950 5.950 17 Si 0.977 3.023 18 H -0.279 1.279 19 H -0.300 1.300 20 H -0.273 1.273 21 C 0.138 3.862 22 C -0.074 4.074 23 C -0.123 4.123 24 C -0.127 4.127 25 H 0.242 0.758 26 H 0.114 0.886 27 H 0.100 0.900 28 H 0.040 0.960 29 H 0.059 0.941 30 H 0.134 0.866 31 H 0.108 0.892 32 H 0.409 0.591 33 H -0.021 1.021 34 H 0.068 0.932 35 H 0.242 0.758 36 H 0.038 0.962 37 H 0.023 0.977 38 H 0.065 0.935 39 H 0.075 0.925 40 H 0.063 0.937 41 H 0.030 0.970 42 H 0.079 0.921 43 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.281 16.754 4.953 17.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.217 4.217 3 C -0.045 4.045 4 C -0.130 4.130 5 C -0.167 4.167 6 C 0.290 3.710 7 O -0.477 6.477 8 N -0.346 5.346 9 C 0.029 3.971 10 H 0.093 0.907 11 C 0.028 3.972 12 N -0.343 5.343 13 C -0.363 4.363 14 H 0.102 0.898 15 C -0.260 4.260 16 N -0.600 5.600 17 Si 0.806 3.194 18 H -0.205 1.205 19 H -0.227 1.227 20 H -0.198 1.198 21 C 0.013 3.987 22 C -0.075 4.075 23 C -0.180 4.180 24 C -0.185 4.185 25 H 0.258 0.742 26 H 0.132 0.868 27 H 0.118 0.882 28 H 0.059 0.941 29 H 0.078 0.922 30 H 0.152 0.848 31 H 0.126 0.874 32 H 0.246 0.754 33 H -0.003 1.003 34 H 0.086 0.914 35 H 0.052 0.948 36 H 0.056 0.944 37 H 0.041 0.959 38 H 0.084 0.916 39 H 0.094 0.906 40 H 0.082 0.918 41 H 0.049 0.951 42 H 0.098 0.902 43 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -1.861 16.095 5.163 17.005 hybrid contribution 0.041 -1.242 -1.083 1.649 sum -1.820 14.852 4.080 15.510 Atomic orbital electron populations 1.25708 0.97059 1.00320 1.00578 1.23832 0.95837 1.01060 1.00991 1.18827 0.83929 0.99511 1.02239 1.21147 0.93744 0.97645 1.00507 1.21676 0.96448 0.96936 1.01667 1.21456 0.82024 0.87149 0.80352 1.90667 1.56490 1.49642 1.50923 1.45739 1.06905 1.28777 1.53228 1.22106 0.94822 0.86977 0.93170 0.90744 1.21950 0.89792 0.91657 0.93805 1.44689 1.13409 1.54606 1.21613 1.19424 0.99220 1.21561 0.96127 0.89751 1.25624 0.96513 1.01309 1.02572 1.70129 1.08245 1.41468 1.40129 0.85166 0.76496 0.78122 0.79634 1.20502 1.22677 1.19830 1.21647 0.93340 0.92901 0.90805 1.21820 0.92351 0.98286 0.95014 1.21679 1.02849 0.91629 1.01859 1.21697 1.02621 0.98016 0.96161 0.74196 0.86822 0.88215 0.94099 0.92183 0.84761 0.87371 0.75406 1.00297 0.91401 0.94841 0.94403 0.95906 0.91592 0.90579 0.91803 0.95056 0.90183 0.91363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -4.57 19.25 74.32 1.43 -3.14 16 2 C -0.22 -5.01 13.34 31.12 0.42 -4.59 16 3 C -0.01 -0.16 5.70 28.79 0.16 0.00 16 4 C -0.09 -2.30 4.46 30.59 0.14 -2.16 16 5 C -0.13 -2.89 5.70 29.85 0.17 -2.72 16 6 C 0.50 17.34 7.83 87.66 0.69 18.02 16 7 O -0.60 -26.68 15.67 -3.05 -0.05 -26.72 16 8 N -0.70 -23.08 4.62 -435.96 -2.01 -25.10 16 9 C 0.14 5.26 2.61 46.38 0.12 5.38 16 10 H 0.07 3.05 7.53 -2.39 -0.02 3.03 16 11 C 0.15 7.98 5.27 86.85 0.46 8.43 16 12 N -0.62 -31.16 3.40 -691.89 -2.35 -33.51 16 13 C -0.23 -13.01 10.27 84.03 0.86 -12.14 16 14 H 0.08 4.42 7.83 -2.91 -0.02 4.40 16 15 C -0.07 -3.90 5.49 84.86 0.47 -3.44 16 16 N -0.95 -59.12 10.09 21.65 0.22 -58.90 16 17 Si 0.98 46.29 29.55 68.60 2.03 48.31 16 18 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 19 H -0.30 -14.58 7.11 99.48 0.71 -13.87 16 20 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 21 C 0.14 5.27 6.41 86.73 0.56 5.83 16 22 C -0.07 -2.28 0.80 -50.99 -0.04 -2.33 16 23 C -0.12 -2.64 8.07 71.98 0.58 -2.05 16 24 C -0.13 -3.68 8.41 71.98 0.61 -3.08 16 25 H 0.24 3.14 7.80 -4.43 -0.03 3.11 16 26 H 0.11 1.47 8.14 -2.39 -0.02 1.45 16 27 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16 28 H 0.04 1.28 8.10 -2.39 -0.02 1.26 16 29 H 0.06 1.62 8.10 -2.39 -0.02 1.60 16 30 H 0.13 1.88 8.14 -2.39 -0.02 1.86 16 31 H 0.11 2.23 8.14 -2.39 -0.02 2.21 16 32 H 0.41 11.22 7.03 -92.71 -0.65 10.57 16 33 H -0.02 -1.20 7.81 -2.38 -0.02 -1.22 16 34 H 0.07 4.14 5.88 -2.39 -0.01 4.13 16 35 H 0.24 14.90 8.31 -92.70 -0.77 14.13 16 36 H 0.04 1.34 7.76 -2.39 -0.02 1.32 16 37 H 0.02 0.88 7.84 -2.38 -0.02 0.87 16 38 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 39 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 40 H 0.06 1.25 6.41 -2.39 -0.02 1.23 16 41 H 0.03 1.09 7.58 -2.39 -0.02 1.07 16 42 H 0.08 1.90 8.14 -2.38 -0.02 1.88 16 43 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 Total: -1.00 -77.25 351.39 4.77 -72.48 By element: Atomic # 1 Polarization: 21.09 SS G_CDS: 0.33 Total: 21.42 kcal Atomic # 6 Polarization: -4.60 SS G_CDS: 6.61 Total: 2.02 kcal Atomic # 7 Polarization: -113.36 SS G_CDS: -4.15 Total: -117.50 kcal Atomic # 8 Polarization: -26.68 SS G_CDS: -0.05 Total: -26.72 kcal Atomic # 14 Polarization: 46.29 SS G_CDS: 2.03 Total: 48.31 kcal Total: -77.25 4.77 -72.48 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725282457.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.066 kcal (2) G-P(sol) polarization free energy of solvation -77.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.483 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds