Wall clock time and date at job start Tue Mar 31 2020 00:37:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.47124 * 2 1 4 4 C 1.53000 * 109.46989 * 239.99984 * 2 1 3 5 5 C 1.47202 * 109.47373 * 120.00313 * 2 1 3 6 6 C 2.64599 * 109.47370 * 120.00038 * 2 1 3 7 7 C 4.07798 * 109.47277 * 120.00046 * 2 1 3 8 8 O 1.21610 * 120.00301 * 307.29198 * 7 6 5 9 9 N 1.34784 * 119.99923 * 127.28963 * 7 6 5 10 10 C 1.46493 * 119.99864 * 179.72626 * 9 7 6 11 11 C 1.53001 * 109.47084 * 180.02562 * 10 9 7 12 12 H 1.09003 * 109.46949 * 294.99717 * 11 10 9 13 13 N 1.46499 * 109.47392 * 54.99694 * 11 10 9 14 14 C 1.36941 * 120.00177 * 205.00605 * 13 11 10 15 15 H 1.08001 * 119.99593 * 359.97438 * 14 13 11 16 16 C 1.38805 * 119.99910 * 180.02562 * 14 13 11 17 17 N 1.31617 * 120.00315 * 359.97438 * 16 14 13 18 18 Si 1.86805 * 119.99791 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.47115 * 59.99918 * 18 16 14 20 20 H 1.48501 * 109.46898 * 179.97438 * 18 16 14 21 21 H 1.48497 * 109.47149 * 299.99528 * 18 16 14 22 22 C 1.52997 * 109.47519 * 175.00001 * 11 10 9 23 23 C 1.53003 * 117.50025 * 248.74690 * 22 11 10 24 24 C 1.52997 * 117.50117 * 180.08541 * 22 11 10 25 25 H 1.08999 * 109.47071 * 299.99445 * 1 2 3 26 26 H 1.08998 * 109.47385 * 60.00219 * 1 2 3 27 27 H 1.09003 * 109.46836 * 180.02562 * 1 2 3 28 28 H 1.09007 * 109.47344 * 180.02562 * 3 2 1 29 29 H 1.09007 * 109.46935 * 299.99894 * 3 2 1 30 30 H 1.08994 * 109.47077 * 60.00084 * 3 2 1 31 31 H 1.08998 * 109.47339 * 299.99703 * 4 2 1 32 32 H 1.08998 * 109.47223 * 59.99698 * 4 2 1 33 33 H 1.09005 * 109.47048 * 180.02562 * 4 2 1 34 34 H 0.97000 * 119.99339 * 359.97438 * 9 7 6 35 35 H 1.09007 * 109.47196 * 299.99538 * 10 9 7 36 36 H 1.09006 * 109.47678 * 59.99732 * 10 9 7 37 37 H 0.97000 * 119.99498 * 24.99864 * 13 11 10 38 38 H 0.96997 * 120.00360 * 179.97438 * 17 16 14 39 39 H 1.09006 * 115.54757 * 34.41089 * 22 11 10 40 40 H 1.09001 * 117.49296 * 359.97438 * 23 22 11 41 41 H 1.08991 * 117.50309 * 145.01577 * 23 22 11 42 42 H 1.08999 * 117.49717 * 214.97918 * 24 22 11 43 43 H 1.08993 * 117.49842 * 359.97328 * 24 22 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 2.0207 -0.6940 1.2018 6 6 2.4121 -1.2473 2.1604 7 6 2.8894 -1.9224 3.3296 8 8 2.1762 -2.0189 4.3099 9 7 4.1293 -2.4509 3.3437 10 6 4.6198 -3.1363 4.5419 11 6 6.0441 -3.6378 4.2955 12 1 6.0317 -4.3973 3.5137 13 7 6.8903 -2.5182 3.8753 14 6 8.0121 -2.7515 3.1253 15 1 8.2731 -3.7610 2.8440 16 6 8.8141 -1.6907 2.7276 17 7 8.4962 -0.4605 3.0709 18 14 10.3447 -2.0091 1.7052 19 1 9.9604 -2.6660 0.4300 20 1 11.0217 -0.7201 1.4130 21 1 11.2684 -2.8942 2.4592 22 6 6.6021 -4.2428 5.5852 23 6 7.7383 -3.4928 6.2835 24 6 8.0255 -4.8025 5.5449 25 1 -0.3633 0.5137 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 3.1301 1.4425 -0.0005 29 1 1.6766 1.9563 -0.8901 30 1 1.6767 1.9562 0.8899 31 1 1.6767 -1.7489 -1.2492 32 1 1.6766 -0.2075 -2.1392 33 1 3.1300 -0.7217 -1.2490 34 1 4.6980 -2.3743 2.5616 35 1 4.6196 -2.4427 5.3829 36 1 3.9704 -3.9820 4.7683 37 1 6.6559 -1.6116 4.1282 38 1 9.0568 0.2808 2.7934 39 1 5.8766 -4.7573 6.2155 40 1 8.0884 -2.5686 5.8238 41 1 7.7606 -3.5142 7.3730 42 1 8.2366 -5.6849 6.1489 43 1 8.5642 -4.7401 4.5995 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001731393414.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:37:22 Heat of formation + Delta-G solvation = 36.377150 kcal Electronic energy + Delta-G solvation = -21275.302379 eV Core-core repulsion = 18129.668652 eV Total energy + Delta-G solvation = -3145.633726 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.35527 -37.69689 -37.50739 -34.49855 -33.27463 -32.20861 -30.76188 -28.23755 -27.50312 -27.46865 -24.56098 -23.36862 -22.15041 -21.48235 -20.57470 -19.32513 -18.16522 -17.15535 -16.00333 -15.78224 -15.32327 -14.84471 -14.60346 -14.44239 -14.38551 -14.05371 -13.59089 -13.16731 -12.92064 -12.64773 -12.60644 -12.11421 -11.91632 -11.88401 -11.45542 -11.43129 -11.30461 -11.19592 -10.89844 -10.86475 -10.55391 -10.33719 -10.19353 -10.16723 -9.95287 -9.69130 -9.48202 -9.18702 -8.99961 -8.69718 -7.09483 -5.85413 -3.15986 1.79733 2.46699 3.36819 3.38870 3.43293 3.44058 3.77986 4.29132 4.47959 4.62929 4.74182 4.75597 4.86520 5.32311 5.38217 5.41037 5.43045 5.46201 5.55627 5.55822 5.64687 5.67255 5.72796 5.82995 5.85175 5.90529 5.96392 6.03261 6.07473 6.08680 6.09950 6.38081 6.42615 6.63236 6.70925 6.84154 6.99162 7.27299 7.37963 7.63142 7.84740 8.31441 8.45401 9.43782 9.97174 10.33399 11.35950 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.013825 B = 0.004612 C = 0.003674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2024.844654 B = 6070.259611 C = 7618.840248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.039 3.961 3 C -0.142 4.142 4 C -0.142 4.142 5 C -0.081 4.081 6 C -0.210 4.210 7 C 0.628 3.372 8 O -0.540 6.540 9 N -0.697 5.697 10 C 0.119 3.881 11 C 0.192 3.808 12 H 0.058 0.942 13 N -0.718 5.718 14 C -0.242 4.242 15 H 0.071 0.929 16 C -0.007 4.007 17 N -0.928 5.928 18 Si 0.903 3.097 19 H -0.286 1.286 20 H -0.292 1.292 21 H -0.286 1.286 22 C -0.178 4.178 23 C -0.163 4.163 24 C -0.175 4.175 25 H 0.061 0.939 26 H 0.068 0.932 27 H 0.060 0.940 28 H 0.066 0.934 29 H 0.068 0.932 30 H 0.061 0.939 31 H 0.060 0.940 32 H 0.068 0.932 33 H 0.065 0.935 34 H 0.414 0.586 35 H 0.069 0.931 36 H 0.068 0.932 37 H 0.387 0.613 38 H 0.256 0.744 39 H 0.087 0.913 40 H 0.118 0.882 41 H 0.069 0.931 42 H 0.071 0.929 43 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.624 -1.289 -5.317 12.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.039 3.961 3 C -0.200 4.200 4 C -0.199 4.199 5 C -0.084 4.084 6 C -0.213 4.213 7 C 0.414 3.586 8 O -0.420 6.420 9 N -0.348 5.348 10 C -0.005 4.005 11 C 0.081 3.919 12 H 0.076 0.924 13 N -0.360 5.360 14 C -0.373 4.373 15 H 0.089 0.911 16 C -0.203 4.203 17 N -0.576 5.576 18 Si 0.734 3.266 19 H -0.213 1.213 20 H -0.218 1.218 21 H -0.212 1.212 22 C -0.199 4.199 23 C -0.200 4.200 24 C -0.212 4.212 25 H 0.080 0.920 26 H 0.087 0.913 27 H 0.079 0.921 28 H 0.085 0.915 29 H 0.087 0.913 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.087 0.913 33 H 0.084 0.916 34 H 0.251 0.749 35 H 0.087 0.913 36 H 0.086 0.914 37 H 0.221 0.779 38 H 0.066 0.934 39 H 0.105 0.895 40 H 0.137 0.863 41 H 0.087 0.913 42 H 0.090 0.910 43 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -11.946 -1.424 -4.717 12.922 hybrid contribution 1.217 0.149 -0.652 1.389 sum -10.728 -1.275 -5.369 12.064 Atomic orbital electron populations 1.21905 0.92604 1.02699 1.02619 1.17891 0.95744 0.94474 0.88011 1.21907 1.02237 0.93242 1.02581 1.21909 1.02183 1.00443 0.95387 1.22421 0.97600 0.94298 0.94041 1.20829 1.02259 1.02413 0.95833 1.14712 0.81940 0.78125 0.83784 1.90810 1.57047 1.59643 1.34493 1.45854 1.14387 1.55778 1.18769 1.21675 0.95423 0.96561 0.86885 1.19999 0.87408 0.91245 0.93268 0.92392 1.42477 1.27096 1.03974 1.62407 1.19119 1.00417 0.92881 1.24835 0.91081 1.24707 0.99178 0.95280 1.01160 1.69646 1.39834 0.97863 1.50223 0.86347 0.83360 0.76712 0.80220 1.21321 1.21776 1.21215 1.23057 0.91336 1.04638 1.00910 1.22916 1.02449 0.98029 0.96595 1.22847 0.98852 0.96359 1.03138 0.91958 0.91341 0.92051 0.91531 0.91302 0.91961 0.92045 0.91316 0.91561 0.74918 0.91277 0.91403 0.77896 0.93376 0.89538 0.86334 0.91255 0.91006 0.87945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.23 8.43 37.16 0.31 -0.92 16 2 C 0.04 0.41 0.95 -157.30 -0.15 0.26 16 3 C -0.14 -1.38 8.43 37.15 0.31 -1.06 16 4 C -0.14 -1.30 8.43 37.16 0.31 -0.99 16 5 C -0.08 -1.17 11.77 -37.12 -0.44 -1.61 16 6 C -0.21 -3.55 13.61 -38.84 -0.53 -4.08 16 7 C 0.63 11.64 7.65 -14.33 -0.11 11.53 16 8 O -0.54 -11.40 17.08 5.27 0.09 -11.31 16 9 N -0.70 -12.21 5.38 -62.76 -0.34 -12.55 16 10 C 0.12 2.03 5.21 -4.04 -0.02 2.01 16 11 C 0.19 3.51 2.86 -67.93 -0.19 3.32 16 12 H 0.06 1.08 8.08 -51.93 -0.42 0.66 16 13 N -0.72 -15.95 3.07 -53.43 -0.16 -16.11 16 14 C -0.24 -6.00 8.16 -15.06 -0.12 -6.12 16 15 H 0.07 1.74 6.91 -52.49 -0.36 1.38 16 16 C -0.01 -0.17 5.50 -17.43 -0.10 -0.27 16 17 N -0.93 -26.25 13.06 55.49 0.72 -25.53 16 18 Si 0.90 21.24 29.55 -169.99 -5.02 16.22 16 19 H -0.29 -6.67 7.11 56.52 0.40 -6.26 16 20 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 21 H -0.29 -6.69 7.11 56.52 0.40 -6.28 16 22 C -0.18 -3.07 5.70 -90.62 -0.52 -3.59 16 23 C -0.16 -3.04 9.74 -26.69 -0.26 -3.30 16 24 C -0.18 -3.10 9.87 -26.69 -0.26 -3.37 16 25 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 28 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 30 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 31 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 32 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 34 H 0.41 7.35 8.10 -40.82 -0.33 7.02 16 35 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 36 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 37 H 0.39 9.49 7.80 -40.82 -0.32 9.17 16 38 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 39 H 0.09 1.33 8.11 -51.93 -0.42 0.91 16 40 H 0.12 2.65 6.68 -51.93 -0.35 2.30 16 41 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 42 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 43 H 0.10 2.03 6.22 -51.93 -0.32 1.71 16 LS Contribution 361.84 15.07 5.45 5.45 Total: -1.00 -28.88 361.84 -8.17 -37.05 By element: Atomic # 1 Polarization: 22.12 SS G_CDS: -7.15 Total: 14.96 kcal Atomic # 6 Polarization: -6.43 SS G_CDS: -1.76 Total: -8.19 kcal Atomic # 7 Polarization: -54.41 SS G_CDS: 0.22 Total: -54.19 kcal Atomic # 8 Polarization: -11.40 SS G_CDS: 0.09 Total: -11.31 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -28.88 -8.17 -37.05 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731393414.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.426 kcal (2) G-P(sol) polarization free energy of solvation -28.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.049 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds