Wall clock time and date at job start Tue Mar 31 2020 00:37:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.47124 * 2 1 4 4 C 1.53000 * 109.46989 * 239.99984 * 2 1 3 5 5 C 1.47202 * 109.47373 * 120.00313 * 2 1 3 6 6 C 2.64599 * 109.47370 * 120.00038 * 2 1 3 7 7 C 4.07798 * 109.47277 * 120.00046 * 2 1 3 8 8 O 1.21610 * 120.00301 * 307.29198 * 7 6 5 9 9 N 1.34784 * 119.99923 * 127.28963 * 7 6 5 10 10 C 1.46493 * 119.99864 * 179.72626 * 9 7 6 11 11 C 1.53001 * 109.47084 * 180.02562 * 10 9 7 12 12 H 1.09003 * 109.46949 * 294.99717 * 11 10 9 13 13 N 1.46499 * 109.47392 * 54.99694 * 11 10 9 14 14 C 1.36941 * 120.00177 * 205.00605 * 13 11 10 15 15 H 1.08001 * 119.99593 * 359.97438 * 14 13 11 16 16 C 1.38805 * 119.99910 * 180.02562 * 14 13 11 17 17 N 1.31617 * 120.00315 * 359.97438 * 16 14 13 18 18 Si 1.86805 * 119.99791 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.47115 * 59.99918 * 18 16 14 20 20 H 1.48501 * 109.46898 * 179.97438 * 18 16 14 21 21 H 1.48497 * 109.47149 * 299.99528 * 18 16 14 22 22 C 1.52997 * 109.47519 * 175.00001 * 11 10 9 23 23 C 1.53003 * 117.50025 * 248.74690 * 22 11 10 24 24 C 1.52997 * 117.50117 * 180.08541 * 22 11 10 25 25 H 1.08999 * 109.47071 * 299.99445 * 1 2 3 26 26 H 1.08998 * 109.47385 * 60.00219 * 1 2 3 27 27 H 1.09003 * 109.46836 * 180.02562 * 1 2 3 28 28 H 1.09007 * 109.47344 * 180.02562 * 3 2 1 29 29 H 1.09007 * 109.46935 * 299.99894 * 3 2 1 30 30 H 1.08994 * 109.47077 * 60.00084 * 3 2 1 31 31 H 1.08998 * 109.47339 * 299.99703 * 4 2 1 32 32 H 1.08998 * 109.47223 * 59.99698 * 4 2 1 33 33 H 1.09005 * 109.47048 * 180.02562 * 4 2 1 34 34 H 0.97000 * 119.99339 * 359.97438 * 9 7 6 35 35 H 1.09007 * 109.47196 * 299.99538 * 10 9 7 36 36 H 1.09006 * 109.47678 * 59.99732 * 10 9 7 37 37 H 0.97000 * 119.99498 * 24.99864 * 13 11 10 38 38 H 0.96997 * 120.00360 * 179.97438 * 17 16 14 39 39 H 1.09006 * 115.54757 * 34.41089 * 22 11 10 40 40 H 1.09001 * 117.49296 * 359.97438 * 23 22 11 41 41 H 1.08991 * 117.50309 * 145.01577 * 23 22 11 42 42 H 1.08999 * 117.49717 * 214.97918 * 24 22 11 43 43 H 1.08993 * 117.49842 * 359.97328 * 24 22 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 2.0207 -0.6940 1.2018 6 6 2.4121 -1.2473 2.1604 7 6 2.8894 -1.9224 3.3296 8 8 2.1762 -2.0189 4.3099 9 7 4.1293 -2.4509 3.3437 10 6 4.6198 -3.1363 4.5419 11 6 6.0441 -3.6378 4.2955 12 1 6.0317 -4.3973 3.5137 13 7 6.8903 -2.5182 3.8753 14 6 8.0121 -2.7515 3.1253 15 1 8.2731 -3.7610 2.8440 16 6 8.8141 -1.6907 2.7276 17 7 8.4962 -0.4605 3.0709 18 14 10.3447 -2.0091 1.7052 19 1 9.9604 -2.6660 0.4300 20 1 11.0217 -0.7201 1.4130 21 1 11.2684 -2.8942 2.4592 22 6 6.6021 -4.2428 5.5852 23 6 7.7383 -3.4928 6.2835 24 6 8.0255 -4.8025 5.5449 25 1 -0.3633 0.5137 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 3.1301 1.4425 -0.0005 29 1 1.6766 1.9563 -0.8901 30 1 1.6767 1.9562 0.8899 31 1 1.6767 -1.7489 -1.2492 32 1 1.6766 -0.2075 -2.1392 33 1 3.1300 -0.7217 -1.2490 34 1 4.6980 -2.3743 2.5616 35 1 4.6196 -2.4427 5.3829 36 1 3.9704 -3.9820 4.7683 37 1 6.6559 -1.6116 4.1282 38 1 9.0568 0.2808 2.7934 39 1 5.8766 -4.7573 6.2155 40 1 8.0884 -2.5686 5.8238 41 1 7.7606 -3.5142 7.3730 42 1 8.2366 -5.6849 6.1489 43 1 8.5642 -4.7401 4.5995 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001731393414.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:37:21 Heat of formation + Delta-G solvation = 19.956351 kcal Electronic energy + Delta-G solvation = -21276.014438 eV Core-core repulsion = 18129.668652 eV Total energy + Delta-G solvation = -3146.345786 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.83071 -39.16031 -38.46836 -35.98776 -35.09611 -33.47246 -32.46817 -29.89943 -28.21793 -28.19761 -26.10939 -25.10391 -23.49315 -22.90118 -21.79811 -20.77507 -19.65355 -18.97159 -17.35833 -16.98848 -16.76710 -16.35373 -16.25666 -15.66343 -15.39929 -15.23230 -15.14135 -14.72586 -14.52953 -13.77775 -13.35463 -13.32927 -12.98170 -12.84825 -12.75233 -12.66533 -12.63030 -12.62117 -12.29910 -12.25938 -12.15351 -11.97215 -11.65572 -11.55612 -11.32077 -11.23297 -11.02795 -10.85783 -10.62340 -10.16145 -9.00795 -7.88786 -5.16969 0.47126 1.23095 1.49727 1.50774 1.55921 2.07997 2.44129 2.58117 3.09865 3.16385 3.46419 3.85247 3.93154 3.94762 3.95912 4.00466 4.25599 4.31782 4.34318 4.48242 4.57675 4.65859 4.73400 4.74042 4.82713 4.90034 4.94907 4.95212 4.97836 5.06530 5.17476 5.18386 5.19944 5.34529 5.35931 5.36943 5.47419 5.66451 5.69487 6.16862 6.30825 6.38343 6.99877 7.39210 8.09396 8.34846 9.33542 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.013825 B = 0.004612 C = 0.003674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2024.844654 B = 6070.259611 C = 7618.840248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.031 3.969 3 C -0.142 4.142 4 C -0.140 4.140 5 C -0.045 4.045 6 C -0.270 4.270 7 C 0.630 3.370 8 O -0.573 6.573 9 N -0.694 5.694 10 C 0.126 3.874 11 C 0.192 3.808 12 H 0.063 0.937 13 N -0.722 5.722 14 C -0.221 4.221 15 H 0.077 0.923 16 C -0.066 4.066 17 N -0.966 5.966 18 Si 0.958 3.042 19 H -0.279 1.279 20 H -0.303 1.303 21 H -0.283 1.283 22 C -0.168 4.168 23 C -0.174 4.174 24 C -0.169 4.169 25 H 0.055 0.945 26 H 0.098 0.902 27 H 0.059 0.941 28 H 0.050 0.950 29 H 0.100 0.900 30 H 0.056 0.944 31 H 0.061 0.939 32 H 0.098 0.902 33 H 0.052 0.948 34 H 0.412 0.588 35 H 0.058 0.942 36 H 0.089 0.911 37 H 0.373 0.627 38 H 0.247 0.753 39 H 0.118 0.882 40 H 0.076 0.924 41 H 0.091 0.909 42 H 0.102 0.898 43 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.685 -2.372 -6.395 14.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.031 3.969 3 C -0.199 4.199 4 C -0.197 4.197 5 C -0.048 4.048 6 C -0.273 4.273 7 C 0.418 3.582 8 O -0.455 6.455 9 N -0.343 5.343 10 C 0.002 3.998 11 C 0.083 3.917 12 H 0.080 0.920 13 N -0.362 5.362 14 C -0.353 4.353 15 H 0.095 0.905 16 C -0.258 4.258 17 N -0.616 5.616 18 Si 0.788 3.212 19 H -0.206 1.206 20 H -0.230 1.230 21 H -0.209 1.209 22 C -0.189 4.189 23 C -0.211 4.211 24 C -0.206 4.206 25 H 0.074 0.926 26 H 0.117 0.883 27 H 0.078 0.922 28 H 0.070 0.930 29 H 0.119 0.881 30 H 0.075 0.925 31 H 0.080 0.920 32 H 0.117 0.883 33 H 0.071 0.929 34 H 0.249 0.751 35 H 0.076 0.924 36 H 0.107 0.893 37 H 0.206 0.794 38 H 0.056 0.944 39 H 0.136 0.864 40 H 0.095 0.905 41 H 0.110 0.890 42 H 0.120 0.880 43 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -13.008 -2.566 -5.798 14.471 hybrid contribution 1.482 0.458 -0.341 1.588 sum -11.526 -2.108 -6.140 13.228 Atomic orbital electron populations 1.21920 0.90679 1.03062 1.03871 1.18316 0.97232 0.94674 0.86722 1.21937 1.01310 0.92724 1.03929 1.21929 1.01390 1.00757 0.95647 1.23455 0.95298 0.92212 0.93828 1.20775 1.04817 1.04711 0.96971 1.14870 0.81732 0.77684 0.83943 1.90771 1.57831 1.61101 1.35818 1.45835 1.14135 1.55564 1.18734 1.21641 0.94920 0.96890 0.86377 1.20143 0.87409 0.90092 0.94042 0.91950 1.42540 1.27008 1.04424 1.62207 1.19396 1.00241 0.92734 1.22883 0.90495 1.25321 1.01945 0.95284 1.03273 1.69795 1.40920 0.98464 1.52451 0.85448 0.80634 0.75870 0.79209 1.20568 1.22992 1.20924 1.23036 0.91715 1.03977 1.00152 1.22779 1.03793 0.96773 0.97772 1.22840 0.98636 0.96841 1.02264 0.92558 0.88296 0.92175 0.93040 0.88135 0.92505 0.92013 0.88318 0.92864 0.75105 0.92362 0.89309 0.79424 0.94386 0.86405 0.90501 0.89043 0.87956 0.90352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.06 8.43 71.98 0.61 -1.45 16 2 C 0.03 0.59 0.95 -53.99 -0.05 0.54 16 3 C -0.14 -2.49 8.43 71.98 0.61 -1.88 16 4 C -0.14 -2.25 8.43 71.98 0.61 -1.65 16 5 C -0.05 -1.30 11.77 31.13 0.37 -0.93 16 6 C -0.27 -9.30 13.61 30.02 0.41 -8.89 16 7 C 0.63 23.92 7.65 85.49 0.65 24.57 16 8 O -0.57 -24.68 17.08 -4.06 -0.07 -24.75 16 9 N -0.69 -24.62 5.38 -470.73 -2.53 -27.15 16 10 C 0.13 4.23 5.21 86.38 0.45 4.68 16 11 C 0.19 6.88 2.86 44.99 0.13 7.01 16 12 H 0.06 2.22 8.08 -2.39 -0.02 2.20 16 13 N -0.72 -32.43 3.07 -322.94 -0.99 -33.42 16 14 C -0.22 -11.02 8.16 84.03 0.69 -10.33 16 15 H 0.08 3.72 6.91 -2.91 -0.02 3.70 16 16 C -0.07 -3.52 5.50 84.86 0.47 -3.06 16 17 N -0.97 -56.28 13.06 21.65 0.28 -56.00 16 18 Si 0.96 44.23 29.55 68.60 2.03 46.26 16 19 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 20 H -0.30 -14.47 7.11 99.48 0.71 -13.76 16 21 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 22 C -0.17 -5.45 5.70 -10.79 -0.06 -5.51 16 23 C -0.17 -6.31 9.74 30.62 0.30 -6.01 16 24 C -0.17 -5.64 9.87 30.62 0.30 -5.34 16 25 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 26 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 27 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 28 H 0.05 1.06 8.14 -2.38 -0.02 1.04 16 29 H 0.10 1.14 8.14 -2.38 -0.02 1.12 16 30 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 31 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 32 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 33 H 0.05 1.00 8.14 -2.38 -0.02 0.98 16 34 H 0.41 14.94 8.10 -92.71 -0.75 14.19 16 35 H 0.06 2.11 8.14 -2.38 -0.02 2.09 16 36 H 0.09 2.65 8.14 -2.38 -0.02 2.63 16 37 H 0.37 18.88 7.80 -92.71 -0.72 18.15 16 38 H 0.25 14.31 8.31 -92.71 -0.77 13.54 16 39 H 0.12 3.18 8.11 -2.38 -0.02 3.16 16 40 H 0.08 3.50 6.68 -2.39 -0.02 3.48 16 41 H 0.09 2.89 8.14 -2.39 -0.02 2.87 16 42 H 0.10 2.82 8.14 -2.39 -0.02 2.80 16 43 H 0.08 3.01 6.22 -2.39 -0.01 3.00 16 Total: -1.00 -63.95 361.84 3.72 -60.23 By element: Atomic # 1 Polarization: 43.55 SS G_CDS: -0.47 Total: 43.09 kcal Atomic # 6 Polarization: -13.72 SS G_CDS: 5.47 Total: -8.26 kcal Atomic # 7 Polarization: -113.33 SS G_CDS: -3.24 Total: -116.57 kcal Atomic # 8 Polarization: -24.68 SS G_CDS: -0.07 Total: -24.75 kcal Atomic # 14 Polarization: 44.23 SS G_CDS: 2.03 Total: 46.26 kcal Total: -63.95 3.72 -60.23 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731393414.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.186 kcal (2) G-P(sol) polarization free energy of solvation -63.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.230 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds