Wall clock time and date at job start Tue Mar 31 2020 00:08:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.47106 * 119.99532 * 2 1 4 4 O 1.21617 * 119.99629 * 179.97438 * 3 2 1 5 5 N 1.34773 * 120.00040 * 0.02562 * 3 2 1 6 6 C 1.46506 * 119.99969 * 180.02562 * 5 3 2 7 7 C 1.52998 * 109.47237 * 179.72043 * 6 5 3 8 8 H 1.09000 * 109.46751 * 64.99774 * 7 6 5 9 9 N 1.46496 * 109.47078 * 304.99765 * 7 6 5 10 10 C 1.36939 * 119.99812 * 154.99484 * 9 7 6 11 11 H 1.07998 * 120.00031 * 0.02562 * 10 9 7 12 12 C 1.38818 * 120.00155 * 179.97438 * 10 9 7 13 13 N 1.31620 * 119.99687 * 0.02562 * 12 10 9 14 14 Si 1.86797 * 119.99946 * 180.02562 * 12 10 9 15 15 H 1.48502 * 109.47482 * 0.02562 * 14 12 10 16 16 H 1.48506 * 109.46927 * 120.00338 * 14 12 10 17 17 H 1.48493 * 109.47231 * 239.99983 * 14 12 10 18 18 C 1.52994 * 109.47095 * 184.99775 * 7 6 5 19 19 C 1.53011 * 117.50014 * 248.74736 * 18 7 6 20 20 C 1.53002 * 117.49791 * 180.08845 * 18 7 6 21 21 C 1.32986 * 120.00329 * 179.97438 * 2 1 3 22 22 C 1.51407 * 136.31548 * 179.62836 * 21 2 1 23 23 C 1.53385 * 87.51751 * 206.06276 * 22 21 2 24 24 C 1.51413 * 136.31796 * 0.02562 * 21 2 1 25 25 H 1.09000 * 109.46981 * 90.00080 * 1 2 3 26 26 H 1.09001 * 109.47106 * 209.99525 * 1 2 3 27 27 H 1.09000 * 109.47455 * 330.00264 * 1 2 3 28 28 H 0.97005 * 120.00161 * 359.72096 * 5 3 2 29 29 H 1.09001 * 109.46512 * 299.72412 * 6 5 3 30 30 H 1.08998 * 109.47174 * 59.71534 * 6 5 3 31 31 H 0.96996 * 120.00496 * 335.00043 * 9 7 6 32 32 H 0.96995 * 119.99923 * 180.02562 * 13 12 10 33 33 H 1.09001 * 115.55265 * 34.41319 * 18 7 6 34 34 H 1.09000 * 117.49671 * 0.02562 * 19 18 7 35 35 H 1.08997 * 117.49621 * 145.02119 * 19 18 7 36 36 H 1.09003 * 117.49834 * 214.97943 * 20 18 7 37 37 H 1.08997 * 117.50379 * 0.02562 * 20 18 7 38 38 H 1.08993 * 113.56307 * 320.64490 * 22 21 2 39 39 H 1.08998 * 113.55925 * 91.38375 * 22 21 2 40 40 H 1.09004 * 113.96422 * 220.29494 * 23 22 21 41 41 H 1.08996 * 113.59956 * 88.79878 * 23 22 21 42 42 H 1.09001 * 113.55355 * 268.61999 * 24 21 2 43 43 H 1.08995 * 113.55880 * 39.35111 * 24 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2424 1.2740 0.0000 4 8 3.4586 1.2741 0.0005 5 7 1.5685 2.4411 0.0005 6 6 2.3009 3.7100 0.0000 7 6 1.3067 4.8728 -0.0063 8 1 0.7372 4.8689 0.9231 9 7 0.3912 4.7264 -1.1406 10 6 -0.8532 5.2962 -1.0940 11 1 -1.1594 5.8539 -0.2213 12 6 -1.7206 5.1580 -2.1690 13 7 -1.3471 4.4787 -3.2328 14 14 -3.4177 5.9359 -2.1058 15 1 -3.5915 6.6402 -0.8100 16 1 -3.5585 6.9078 -3.2197 17 1 -4.4520 4.8786 -2.2376 18 6 2.0678 6.1940 -0.1326 19 6 2.0731 7.1251 1.0816 20 6 1.2452 7.4838 -0.1551 21 6 2.1720 -1.1517 0.0005 22 6 3.6251 -1.5769 -0.0061 23 6 3.1710 -2.8819 -0.6720 24 6 1.8140 -2.6228 0.0007 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3634 0.8900 0.5138 28 1 0.5985 2.4411 -0.0032 29 1 2.9245 3.7698 0.8920 30 1 2.9307 3.7656 -0.8879 31 1 0.6663 4.2258 -1.9245 32 1 -1.9530 4.3824 -3.9840 33 1 2.9688 6.1608 -0.7452 34 1 1.5346 6.7963 1.9704 35 1 2.9773 7.7048 1.2673 36 1 1.6052 8.2994 -0.7823 37 1 0.1618 7.3913 -0.0795 38 1 4.2567 -0.9603 -0.6454 39 1 4.0421 -1.7188 0.9910 40 1 3.6837 -3.7697 -0.3017 41 1 3.1401 -2.8287 -1.7602 42 1 1.7339 -3.0515 0.9997 43 1 0.9605 -2.8636 -0.6331 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001731393736.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:08:05 Heat of formation + Delta-G solvation = 30.803793 kcal Electronic energy + Delta-G solvation = -21746.745458 eV Core-core repulsion = 18600.870053 eV Total energy + Delta-G solvation = -3145.875405 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.73550 -38.32183 -37.39390 -34.59719 -33.50415 -32.84212 -30.77173 -27.97980 -26.48137 -25.49668 -24.08106 -23.03717 -21.93568 -21.67756 -20.16911 -19.62184 -18.13372 -17.15661 -16.26360 -15.77227 -15.56038 -15.14415 -14.74725 -14.45655 -14.25311 -13.62712 -13.55866 -13.20432 -13.01006 -12.75960 -12.46722 -12.26903 -12.02947 -11.88823 -11.55563 -11.36661 -11.16025 -10.97178 -10.89156 -10.86424 -10.69744 -10.43326 -10.10449 -9.93908 -9.61396 -9.36137 -9.25175 -8.99421 -8.80188 -8.45594 -7.05492 -5.82711 -3.12201 1.54216 3.37982 3.44372 3.46561 3.57069 3.65102 4.40493 4.45870 4.55884 4.58734 4.72830 5.05552 5.16196 5.24519 5.36884 5.47055 5.52221 5.52919 5.60371 5.60447 5.71929 5.76754 5.80173 5.86937 5.91057 5.96017 6.03818 6.08587 6.12255 6.18854 6.21410 6.38090 6.46092 6.54979 6.61719 6.78106 6.80712 6.96163 7.00223 7.64478 8.05208 8.34119 8.67584 9.46413 10.00947 10.37235 11.39181 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.016190 B = 0.004672 C = 0.003810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1729.051076 B = 5991.198401 C = 7348.091663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.153 4.153 3 C 0.552 3.448 4 O -0.556 6.556 5 N -0.708 5.708 6 C 0.119 3.881 7 C 0.193 3.807 8 H 0.055 0.945 9 N -0.717 5.717 10 C -0.237 4.237 11 H 0.071 0.929 12 C -0.009 4.009 13 N -0.928 5.928 14 Si 0.902 3.098 15 H -0.281 1.281 16 H -0.292 1.292 17 H -0.292 1.292 18 C -0.159 4.159 19 C -0.196 4.196 20 C -0.156 4.156 21 C -0.084 4.084 22 C -0.100 4.100 23 C -0.142 4.142 24 C -0.104 4.104 25 H 0.075 0.925 26 H 0.065 0.935 27 H 0.069 0.931 28 H 0.410 0.590 29 H 0.065 0.935 30 H 0.063 0.937 31 H 0.386 0.614 32 H 0.255 0.745 33 H 0.090 0.910 34 H 0.086 0.914 35 H 0.080 0.920 36 H 0.079 0.921 37 H 0.104 0.896 38 H 0.084 0.916 39 H 0.092 0.908 40 H 0.074 0.926 41 H 0.083 0.917 42 H 0.096 0.904 43 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.984 -9.570 7.971 13.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.155 4.155 3 C 0.340 3.660 4 O -0.436 6.436 5 N -0.360 5.360 6 C -0.005 4.005 7 C 0.082 3.918 8 H 0.073 0.927 9 N -0.358 5.358 10 C -0.368 4.368 11 H 0.089 0.911 12 C -0.205 4.205 13 N -0.576 5.576 14 Si 0.733 3.267 15 H -0.206 1.206 16 H -0.219 1.219 17 H -0.219 1.219 18 C -0.181 4.181 19 C -0.234 4.234 20 C -0.193 4.193 21 C -0.085 4.085 22 C -0.136 4.136 23 C -0.179 4.179 24 C -0.141 4.141 25 H 0.094 0.906 26 H 0.084 0.916 27 H 0.088 0.912 28 H 0.248 0.752 29 H 0.083 0.917 30 H 0.081 0.919 31 H 0.220 0.780 32 H 0.065 0.935 33 H 0.109 0.891 34 H 0.104 0.896 35 H 0.099 0.901 36 H 0.098 0.902 37 H 0.123 0.877 38 H 0.102 0.898 39 H 0.111 0.889 40 H 0.092 0.908 41 H 0.102 0.898 42 H 0.114 0.886 43 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 6.648 -9.467 8.004 14.067 hybrid contribution -1.344 0.531 -0.495 1.528 sum 5.303 -8.935 7.509 12.820 Atomic orbital electron populations 1.20696 0.90354 1.02695 1.03032 1.20557 0.95996 0.91453 1.07539 1.18214 0.87101 0.84007 0.76657 1.90720 1.13600 1.87971 1.51336 1.45926 1.11421 1.05126 1.73555 1.21578 0.94713 0.82743 1.01480 1.20056 0.89598 0.89197 0.92936 0.92743 1.42461 1.13003 1.63550 1.16757 1.19211 0.90179 1.26655 1.00741 0.91082 1.24715 0.98459 1.00872 0.96502 1.69672 1.36115 1.45305 1.06526 0.86202 0.84659 0.78569 0.77241 1.20579 1.21935 1.21923 1.23030 1.01058 0.93874 1.00094 1.22962 1.02286 1.05220 0.92951 1.22781 0.99614 0.97868 0.99043 1.23101 0.97810 0.93522 0.94111 1.22115 0.94289 0.95729 1.01510 1.22708 0.96759 0.98062 1.00411 1.22247 0.98414 0.92007 1.01439 0.90641 0.91603 0.91174 0.75193 0.91722 0.91873 0.78033 0.93538 0.89146 0.89556 0.90099 0.90230 0.87720 0.89763 0.88946 0.90755 0.89847 0.88605 0.90631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.44 9.57 36.01 0.34 -1.10 16 2 C -0.15 -2.29 6.00 -102.85 -0.62 -2.90 16 3 C 0.55 9.82 7.75 -12.66 -0.10 9.72 16 4 O -0.56 -11.18 15.15 5.26 0.08 -11.10 16 5 N -0.71 -12.37 5.33 -61.49 -0.33 -12.69 16 6 C 0.12 2.10 5.22 -4.04 -0.02 2.08 16 7 C 0.19 3.61 2.70 -67.94 -0.18 3.43 16 8 H 0.05 1.03 7.84 -51.93 -0.41 0.63 16 9 N -0.72 -16.41 4.54 -53.43 -0.24 -16.66 16 10 C -0.24 -6.00 8.63 -15.06 -0.13 -6.13 16 11 H 0.07 1.77 6.91 -52.49 -0.36 1.40 16 12 C -0.01 -0.24 5.50 -17.43 -0.10 -0.34 16 13 N -0.93 -26.66 13.06 55.49 0.72 -25.93 16 14 Si 0.90 21.38 29.55 -169.99 -5.02 16.36 16 15 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 16 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 17 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 18 C -0.16 -2.79 5.36 -90.62 -0.49 -3.28 16 19 C -0.20 -3.00 10.18 -26.68 -0.27 -3.27 16 20 C -0.16 -2.77 9.78 -26.69 -0.26 -3.03 16 21 C -0.08 -1.11 6.60 -100.48 -0.66 -1.78 16 22 C -0.10 -1.23 6.99 -27.55 -0.19 -1.42 16 23 C -0.14 -1.37 8.17 -26.20 -0.21 -1.58 16 24 C -0.10 -1.02 7.71 -27.41 -0.21 -1.24 16 25 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 26 H 0.07 0.71 7.91 -51.93 -0.41 0.30 16 27 H 0.07 0.92 6.71 -51.93 -0.35 0.57 16 28 H 0.41 7.19 6.24 -40.82 -0.25 6.93 16 29 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 30 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 31 H 0.39 9.72 7.80 -40.82 -0.32 9.41 16 32 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 33 H 0.09 1.56 8.11 -51.93 -0.42 1.14 16 34 H 0.09 1.27 8.05 -51.93 -0.42 0.85 16 35 H 0.08 1.10 8.14 -51.93 -0.42 0.67 16 36 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 37 H 0.10 2.08 6.23 -51.93 -0.32 1.75 16 38 H 0.08 1.21 7.49 -51.93 -0.39 0.82 16 39 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 40 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 41 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 42 H 0.10 0.80 8.14 -51.93 -0.42 0.37 16 43 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 LS Contribution 352.11 15.07 5.31 5.31 Total: -1.00 -29.25 352.11 -9.60 -38.84 By element: Atomic # 1 Polarization: 23.71 SS G_CDS: -7.02 Total: 16.70 kcal Atomic # 6 Polarization: -7.73 SS G_CDS: -3.10 Total: -10.82 kcal Atomic # 7 Polarization: -55.44 SS G_CDS: 0.15 Total: -55.28 kcal Atomic # 8 Polarization: -11.18 SS G_CDS: 0.08 Total: -11.10 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -29.25 -9.60 -38.84 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731393736.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.648 kcal (2) G-P(sol) polarization free energy of solvation -29.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.844 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds