Wall clock time and date at job start Tue Mar 31 2020 00:08:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.47106 * 119.99532 * 2 1 4 4 O 1.21617 * 119.99629 * 179.97438 * 3 2 1 5 5 N 1.34773 * 120.00040 * 0.02562 * 3 2 1 6 6 C 1.46506 * 119.99969 * 180.02562 * 5 3 2 7 7 C 1.52998 * 109.47237 * 179.72043 * 6 5 3 8 8 H 1.09000 * 109.46751 * 64.99774 * 7 6 5 9 9 N 1.46496 * 109.47078 * 304.99765 * 7 6 5 10 10 C 1.36939 * 119.99812 * 154.99484 * 9 7 6 11 11 H 1.07998 * 120.00031 * 0.02562 * 10 9 7 12 12 C 1.38818 * 120.00155 * 179.97438 * 10 9 7 13 13 N 1.31620 * 119.99687 * 0.02562 * 12 10 9 14 14 Si 1.86797 * 119.99946 * 180.02562 * 12 10 9 15 15 H 1.48502 * 109.47482 * 0.02562 * 14 12 10 16 16 H 1.48506 * 109.46927 * 120.00338 * 14 12 10 17 17 H 1.48493 * 109.47231 * 239.99983 * 14 12 10 18 18 C 1.52994 * 109.47095 * 184.99775 * 7 6 5 19 19 C 1.53011 * 117.50014 * 248.74736 * 18 7 6 20 20 C 1.53002 * 117.49791 * 180.08845 * 18 7 6 21 21 C 1.32986 * 120.00329 * 179.97438 * 2 1 3 22 22 C 1.51407 * 136.31548 * 179.62836 * 21 2 1 23 23 C 1.53385 * 87.51751 * 206.06276 * 22 21 2 24 24 C 1.51413 * 136.31796 * 0.02562 * 21 2 1 25 25 H 1.09000 * 109.46981 * 90.00080 * 1 2 3 26 26 H 1.09001 * 109.47106 * 209.99525 * 1 2 3 27 27 H 1.09000 * 109.47455 * 330.00264 * 1 2 3 28 28 H 0.97005 * 120.00161 * 359.72096 * 5 3 2 29 29 H 1.09001 * 109.46512 * 299.72412 * 6 5 3 30 30 H 1.08998 * 109.47174 * 59.71534 * 6 5 3 31 31 H 0.96996 * 120.00496 * 335.00043 * 9 7 6 32 32 H 0.96995 * 119.99923 * 180.02562 * 13 12 10 33 33 H 1.09001 * 115.55265 * 34.41319 * 18 7 6 34 34 H 1.09000 * 117.49671 * 0.02562 * 19 18 7 35 35 H 1.08997 * 117.49621 * 145.02119 * 19 18 7 36 36 H 1.09003 * 117.49834 * 214.97943 * 20 18 7 37 37 H 1.08997 * 117.50379 * 0.02562 * 20 18 7 38 38 H 1.08993 * 113.56307 * 320.64490 * 22 21 2 39 39 H 1.08998 * 113.55925 * 91.38375 * 22 21 2 40 40 H 1.09004 * 113.96422 * 220.29494 * 23 22 21 41 41 H 1.08996 * 113.59956 * 88.79878 * 23 22 21 42 42 H 1.09001 * 113.55355 * 268.61999 * 24 21 2 43 43 H 1.08995 * 113.55880 * 39.35111 * 24 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2424 1.2740 0.0000 4 8 3.4586 1.2741 0.0005 5 7 1.5685 2.4411 0.0005 6 6 2.3009 3.7100 0.0000 7 6 1.3067 4.8728 -0.0063 8 1 0.7372 4.8689 0.9231 9 7 0.3912 4.7264 -1.1406 10 6 -0.8532 5.2962 -1.0940 11 1 -1.1594 5.8539 -0.2213 12 6 -1.7206 5.1580 -2.1690 13 7 -1.3471 4.4787 -3.2328 14 14 -3.4177 5.9359 -2.1058 15 1 -3.5915 6.6402 -0.8100 16 1 -3.5585 6.9078 -3.2197 17 1 -4.4520 4.8786 -2.2376 18 6 2.0678 6.1940 -0.1326 19 6 2.0731 7.1251 1.0816 20 6 1.2452 7.4838 -0.1551 21 6 2.1720 -1.1517 0.0005 22 6 3.6251 -1.5769 -0.0061 23 6 3.1710 -2.8819 -0.6720 24 6 1.8140 -2.6228 0.0007 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3634 0.8900 0.5138 28 1 0.5985 2.4411 -0.0032 29 1 2.9245 3.7698 0.8920 30 1 2.9307 3.7656 -0.8879 31 1 0.6663 4.2258 -1.9245 32 1 -1.9530 4.3824 -3.9840 33 1 2.9688 6.1608 -0.7452 34 1 1.5346 6.7963 1.9704 35 1 2.9773 7.7048 1.2673 36 1 1.6052 8.2994 -0.7823 37 1 0.1618 7.3913 -0.0795 38 1 4.2567 -0.9603 -0.6454 39 1 4.0421 -1.7188 0.9910 40 1 3.6837 -3.7697 -0.3017 41 1 3.1401 -2.8287 -1.7602 42 1 1.7339 -3.0515 0.9997 43 1 0.9605 -2.8636 -0.6331 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001731393736.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:08:04 Heat of formation + Delta-G solvation = 14.015667 kcal Electronic energy + Delta-G solvation = -21747.473446 eV Core-core repulsion = 18600.870053 eV Total energy + Delta-G solvation = -3146.603393 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.00873 -39.48325 -38.79073 -36.08646 -35.19686 -34.08306 -32.51642 -29.64165 -27.46999 -26.41187 -25.76904 -24.55465 -23.16167 -23.00206 -21.50993 -20.99718 -19.56893 -18.86232 -17.40593 -17.14731 -16.87240 -16.48631 -16.06103 -16.03703 -15.64788 -15.20706 -15.01979 -14.65539 -14.41226 -14.00286 -13.61126 -13.30343 -13.28008 -12.98821 -12.90606 -12.83992 -12.69808 -12.45823 -12.38212 -12.25828 -11.95049 -11.86575 -11.72513 -11.41681 -11.01378 -10.97602 -10.79712 -10.59565 -10.10446 -9.68687 -8.99800 -7.88042 -5.16009 0.39709 1.49063 1.51317 1.59062 2.24088 2.34365 2.58432 3.07625 3.44082 3.50646 3.60331 3.78746 3.83948 3.99096 4.02925 4.17086 4.26297 4.34161 4.38842 4.42983 4.55457 4.65424 4.75525 4.76421 4.77994 4.82769 4.86841 4.89878 5.00525 5.06025 5.10431 5.15463 5.16207 5.36766 5.39436 5.40058 5.46835 5.55185 5.62362 5.76772 6.31357 6.64821 7.27730 7.39536 8.09865 8.36014 9.35095 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.016190 B = 0.004672 C = 0.003810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1729.051076 B = 5991.198401 C = 7348.091663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.184 4.184 3 C 0.545 3.455 4 O -0.587 6.587 5 N -0.709 5.709 6 C 0.128 3.872 7 C 0.198 3.802 8 H 0.058 0.942 9 N -0.724 5.724 10 C -0.218 4.218 11 H 0.078 0.922 12 C -0.069 4.069 13 N -0.967 5.967 14 Si 0.960 3.040 15 H -0.266 1.266 16 H -0.302 1.302 17 H -0.296 1.296 18 C -0.175 4.175 19 C -0.161 4.161 20 C -0.172 4.172 21 C -0.081 4.081 22 C -0.111 4.111 23 C -0.130 4.130 24 C -0.093 4.093 25 H 0.064 0.936 26 H 0.091 0.909 27 H 0.062 0.938 28 H 0.410 0.590 29 H 0.078 0.922 30 H 0.048 0.952 31 H 0.372 0.628 32 H 0.247 0.753 33 H 0.092 0.908 34 H 0.096 0.904 35 H 0.107 0.893 36 H 0.086 0.914 37 H 0.081 0.919 38 H 0.055 0.945 39 H 0.104 0.896 40 H 0.101 0.899 41 H 0.079 0.921 42 H 0.122 0.878 43 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.030 -10.487 9.818 15.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.187 4.187 3 C 0.335 3.665 4 O -0.470 6.470 5 N -0.360 5.360 6 C 0.003 3.997 7 C 0.089 3.911 8 H 0.076 0.924 9 N -0.363 5.363 10 C -0.350 4.350 11 H 0.096 0.904 12 C -0.261 4.261 13 N -0.618 5.618 14 Si 0.791 3.209 15 H -0.191 1.191 16 H -0.230 1.230 17 H -0.224 1.224 18 C -0.196 4.196 19 C -0.199 4.199 20 C -0.210 4.210 21 C -0.083 4.083 22 C -0.148 4.148 23 C -0.167 4.167 24 C -0.129 4.129 25 H 0.083 0.917 26 H 0.110 0.890 27 H 0.081 0.919 28 H 0.247 0.753 29 H 0.096 0.904 30 H 0.066 0.934 31 H 0.204 0.796 32 H 0.056 0.944 33 H 0.110 0.890 34 H 0.114 0.886 35 H 0.125 0.875 36 H 0.105 0.895 37 H 0.100 0.900 38 H 0.074 0.926 39 H 0.122 0.878 40 H 0.120 0.880 41 H 0.098 0.902 42 H 0.139 0.861 43 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 6.699 -10.361 9.905 15.822 hybrid contribution -1.214 0.795 -0.999 1.762 sum 5.485 -9.566 8.906 14.174 Atomic orbital electron populations 1.20637 0.89088 1.03601 1.02580 1.20541 0.96872 0.90585 1.10688 1.18773 0.86972 0.84964 0.75754 1.90691 1.14876 1.88465 1.53004 1.45939 1.11308 1.05215 1.73525 1.21465 0.94315 0.82554 1.01330 1.20137 0.89266 0.90374 0.91334 0.92441 1.42566 1.13172 1.63221 1.17323 1.19502 0.90659 1.24624 1.00199 0.90431 1.25361 1.01670 1.02407 0.96688 1.69819 1.37051 1.47704 1.07258 0.85267 0.81036 0.77381 0.77249 1.19061 1.23017 1.22395 1.22914 1.01075 0.93042 1.02578 1.23037 1.02298 1.02722 0.91839 1.22737 0.98506 0.98165 1.01543 1.23707 0.98852 0.95059 0.90720 1.22276 0.93417 0.97067 1.02012 1.22686 0.96518 0.97418 1.00126 1.22355 0.98861 0.88671 1.03052 0.91743 0.89042 0.91885 0.75269 0.90386 0.93403 0.79632 0.94380 0.88965 0.88562 0.87503 0.89540 0.90024 0.92587 0.87754 0.88012 0.90192 0.86052 0.89465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.60 9.57 71.24 0.68 -1.92 16 2 C -0.18 -5.49 6.00 -18.70 -0.11 -5.60 16 3 C 0.55 19.84 7.75 86.57 0.67 20.51 16 4 O -0.59 -24.28 15.15 -4.09 -0.06 -24.34 16 5 N -0.71 -25.26 5.33 -466.70 -2.49 -27.75 16 6 C 0.13 4.54 5.22 86.38 0.45 4.99 16 7 C 0.20 7.35 2.70 44.99 0.12 7.47 16 8 H 0.06 2.12 7.84 -2.39 -0.02 2.10 16 9 N -0.72 -33.56 4.54 -322.96 -1.47 -35.02 16 10 C -0.22 -11.07 8.63 84.03 0.73 -10.34 16 11 H 0.08 3.80 6.91 -2.91 -0.02 3.78 16 12 C -0.07 -3.74 5.50 84.86 0.47 -3.28 16 13 N -0.97 -56.96 13.06 21.65 0.28 -56.67 16 14 Si 0.96 44.43 29.55 68.60 2.03 46.45 16 15 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 16 H -0.30 -14.37 7.11 99.48 0.71 -13.67 16 17 H -0.30 -13.81 7.11 99.48 0.71 -13.11 16 18 C -0.17 -5.95 5.36 -10.79 -0.06 -6.01 16 19 C -0.16 -4.48 10.18 30.62 0.31 -4.17 16 20 C -0.17 -5.91 9.78 30.62 0.30 -5.61 16 21 C -0.08 -2.08 6.60 -17.17 -0.11 -2.19 16 22 C -0.11 -2.62 6.99 30.06 0.21 -2.41 16 23 C -0.13 -2.16 8.17 30.94 0.25 -1.91 16 24 C -0.09 -1.53 7.71 30.16 0.23 -1.30 16 25 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 26 H 0.09 1.80 7.91 -2.39 -0.02 1.78 16 27 H 0.06 1.65 6.71 -2.39 -0.02 1.64 16 28 H 0.41 14.69 6.24 -92.70 -0.58 14.11 16 29 H 0.08 2.56 8.14 -2.39 -0.02 2.54 16 30 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 31 H 0.37 19.31 7.80 -92.71 -0.72 18.59 16 32 H 0.25 14.33 8.31 -92.71 -0.77 13.56 16 33 H 0.09 3.12 8.11 -2.39 -0.02 3.10 16 34 H 0.10 2.52 8.05 -2.39 -0.02 2.50 16 35 H 0.11 2.47 8.14 -2.39 -0.02 2.46 16 36 H 0.09 2.81 8.14 -2.39 -0.02 2.79 16 37 H 0.08 3.19 6.23 -2.39 -0.01 3.17 16 38 H 0.06 1.64 7.49 -2.39 -0.02 1.63 16 39 H 0.10 2.20 8.14 -2.39 -0.02 2.19 16 40 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 41 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 42 H 0.12 1.48 8.14 -2.39 -0.02 1.46 16 43 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 Total: -1.00 -64.09 352.11 2.14 -61.95 By element: Atomic # 1 Polarization: 47.44 SS G_CDS: -0.29 Total: 47.15 kcal Atomic # 6 Polarization: -15.91 SS G_CDS: 4.14 Total: -11.77 kcal Atomic # 7 Polarization: -115.77 SS G_CDS: -3.67 Total: -119.45 kcal Atomic # 8 Polarization: -24.28 SS G_CDS: -0.06 Total: -24.34 kcal Atomic # 14 Polarization: 44.43 SS G_CDS: 2.03 Total: 46.45 kcal Total: -64.09 2.14 -61.95 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731393736.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.966 kcal (2) G-P(sol) polarization free energy of solvation -64.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.950 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds