Wall clock time and date at job start Tue Mar 31 2020 01:02:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50706 * 120.00302 * 2 1 4 4 C 1.53005 * 109.46643 * 359.97438 * 3 2 1 5 5 C 1.52995 * 109.47451 * 119.99804 * 3 2 1 6 6 C 1.52997 * 109.46768 * 240.00195 * 3 2 1 7 7 C 1.50706 * 109.47098 * 179.97438 * 6 3 2 8 8 O 1.21281 * 119.99728 * 359.97438 * 7 6 3 9 9 N 1.34771 * 119.99871 * 179.97438 * 7 6 3 10 10 C 1.47864 * 126.94939 * 0.02562 * 9 7 6 11 11 C 1.56017 * 105.10726 * 181.97604 * 10 9 7 12 12 H 1.09003 * 116.24730 * 158.83468 * 11 10 9 13 13 C 1.57084 * 99.60670 * 32.80690 * 11 10 9 14 14 C 1.49294 * 126.94066 * 179.70500 * 9 7 6 15 15 H 1.09002 * 116.15200 * 15.86764 * 14 9 7 16 16 C 1.58430 * 103.70181 * 246.54814 * 14 9 7 17 17 N 1.47870 * 104.83235 * 288.54769 * 16 14 9 18 18 C 1.36941 * 126.94187 * 182.30670 * 17 16 14 19 19 H 1.08003 * 119.99445 * 180.02562 * 18 17 16 20 20 C 1.38809 * 120.00542 * 359.97438 * 18 17 16 21 21 N 1.31625 * 119.99748 * 0.02562 * 20 18 17 22 22 Si 1.86790 * 120.00389 * 179.97438 * 20 18 17 23 23 H 1.48506 * 109.46920 * 0.02562 * 22 20 18 24 24 H 1.48503 * 109.47155 * 120.00200 * 22 20 18 25 25 H 1.48496 * 109.47726 * 240.00697 * 22 20 18 26 26 H 1.08002 * 120.00352 * 180.02562 * 1 2 3 27 27 H 1.08005 * 119.99880 * 359.72812 * 1 2 3 28 28 H 1.07998 * 120.00195 * 179.97438 * 2 1 3 29 29 H 1.08992 * 109.46800 * 60.00369 * 4 3 2 30 30 H 1.09002 * 109.46784 * 180.02562 * 4 3 2 31 31 H 1.09000 * 109.47298 * 299.99960 * 4 3 2 32 32 H 1.08999 * 109.47043 * 59.99814 * 5 3 2 33 33 H 1.09002 * 109.47065 * 179.97438 * 5 3 2 34 34 H 1.08997 * 109.46864 * 300.00066 * 5 3 2 35 35 H 1.09005 * 109.47200 * 299.99038 * 6 3 2 36 36 H 1.09000 * 109.47763 * 59.99678 * 6 3 2 37 37 H 1.09004 * 110.31492 * 300.88520 * 10 9 7 38 38 H 1.09002 * 110.31669 * 62.96866 * 10 9 7 39 39 H 1.08996 * 112.36555 * 64.26902 * 13 11 10 40 40 H 1.08998 * 112.37131 * 191.71807 * 13 11 10 41 41 H 1.08997 * 110.19392 * 169.85830 * 16 14 9 42 42 H 1.08998 * 110.70752 * 47.49652 * 16 14 9 43 43 H 0.96991 * 119.99832 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 1.0692 2.4680 -0.0006 5 6 2.9431 1.3862 1.2492 6 6 2.9431 1.3861 -1.2493 7 6 3.6962 2.6914 -1.2497 8 8 3.5441 3.4795 -0.3405 9 7 4.5388 2.9829 -2.2603 10 6 4.8387 2.1411 -3.4383 11 6 5.9082 2.9391 -4.2468 12 1 6.5183 2.3609 -4.9407 13 6 6.6659 3.6374 -3.0611 14 6 5.3531 4.2240 -2.4200 15 1 5.4658 4.8426 -1.5296 16 6 4.7252 4.9233 -3.6955 17 7 5.1437 4.0786 -4.8347 18 6 4.8827 4.2975 -6.1611 19 1 5.2447 3.6026 -6.9044 20 6 4.1521 5.4118 -6.5502 21 7 3.7105 6.2583 -5.6441 22 14 3.7968 5.7107 -8.3594 23 1 4.3994 4.6211 -9.1688 24 1 2.3281 5.7350 -8.5781 25 1 4.3800 7.0132 -8.7699 26 1 -0.5401 -0.9353 0.0004 27 1 -0.5400 0.9354 0.0044 28 1 1.8500 -0.9353 0.0004 29 1 0.4424 2.4105 0.8891 30 1 1.6143 3.4120 -0.0011 31 1 0.4429 2.4101 -0.8909 32 1 3.6514 0.5577 1.2493 33 1 3.4885 2.3300 1.2489 34 1 2.3164 1.3285 2.1391 35 1 3.6515 0.5576 -1.2492 36 1 2.3165 1.3283 -2.1393 37 1 5.2429 1.1791 -3.1230 38 1 3.9402 1.9951 -4.0378 39 1 7.1652 2.9209 -2.4088 40 1 7.3436 4.4188 -3.4047 41 1 5.1233 5.9319 -3.8059 42 1 3.6379 4.9506 -3.6240 43 1 3.2003 7.0371 -5.9160 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001732145569.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:02:28 Heat of formation + Delta-G solvation = 39.987300 kcal Electronic energy + Delta-G solvation = -22773.320914 eV Core-core repulsion = 19627.843736 eV Total energy + Delta-G solvation = -3145.477179 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.20243 -38.71440 -36.51828 -33.64134 -31.70420 -31.10624 -29.18910 -28.55417 -27.46341 -27.10694 -25.20056 -23.52715 -22.40905 -20.46186 -19.80840 -18.42807 -18.00366 -17.14873 -16.42655 -15.69987 -15.31175 -15.17357 -14.73953 -14.12794 -13.88517 -13.64747 -13.52408 -13.04359 -12.73676 -12.19564 -12.04179 -11.76294 -11.65566 -11.57533 -11.35148 -11.27310 -10.97507 -10.93582 -10.86047 -10.82529 -10.69131 -10.57695 -10.52639 -10.21486 -10.07431 -9.65647 -9.38304 -9.09238 -8.71385 -7.93702 -6.94504 -5.78896 -3.13497 2.27245 3.08520 3.35617 3.40707 3.43849 3.46358 4.40141 4.70911 4.85383 4.98813 5.06871 5.18166 5.26392 5.29698 5.37780 5.44816 5.55034 5.61336 5.68527 5.70794 5.76939 5.81393 5.91119 5.93644 6.12319 6.15700 6.16363 6.26004 6.28889 6.39664 6.51279 6.51400 6.57674 6.60582 6.68429 6.77330 6.83386 7.41150 7.48488 7.70681 8.07759 8.15910 8.66697 9.08496 9.69160 10.38566 11.33245 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.022310 B = 0.004761 C = 0.004391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1254.744623 B = 5879.380002 C = 6375.458013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.142 4.142 3 C -0.019 4.019 4 C -0.155 4.155 5 C -0.147 4.147 6 C -0.123 4.123 7 C 0.529 3.471 8 O -0.549 6.549 9 N -0.607 5.607 10 C 0.084 3.916 11 C 0.141 3.859 12 H 0.104 0.896 13 C -0.151 4.151 14 C 0.095 3.905 15 H 0.113 0.887 16 C 0.177 3.823 17 N -0.598 5.598 18 C -0.231 4.231 19 H 0.081 0.919 20 C -0.006 4.006 21 N -0.919 5.919 22 Si 0.912 3.088 23 H -0.279 1.279 24 H -0.291 1.291 25 H -0.290 1.290 26 H 0.092 0.908 27 H 0.104 0.896 28 H 0.105 0.895 29 H 0.050 0.950 30 H 0.089 0.911 31 H 0.048 0.952 32 H 0.044 0.956 33 H 0.089 0.911 34 H 0.048 0.952 35 H 0.087 0.913 36 H 0.090 0.910 37 H 0.052 0.948 38 H 0.070 0.930 39 H 0.065 0.935 40 H 0.082 0.918 41 H 0.054 0.946 42 H 0.048 0.952 43 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.118 -11.414 9.439 14.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.160 4.160 3 C -0.020 4.020 4 C -0.212 4.212 5 C -0.204 4.204 6 C -0.162 4.162 7 C 0.319 3.681 8 O -0.429 6.429 9 N -0.340 5.340 10 C -0.042 4.042 11 C 0.032 3.968 12 H 0.122 0.878 13 C -0.191 4.191 14 C -0.008 4.008 15 H 0.131 0.869 16 C 0.052 3.948 17 N -0.322 5.322 18 C -0.359 4.359 19 H 0.099 0.901 20 C -0.203 4.203 21 N -0.566 5.566 22 Si 0.743 3.257 23 H -0.204 1.204 24 H -0.218 1.218 25 H -0.217 1.217 26 H 0.111 0.889 27 H 0.122 0.878 28 H 0.123 0.877 29 H 0.069 0.931 30 H 0.108 0.892 31 H 0.067 0.933 32 H 0.063 0.937 33 H 0.107 0.893 34 H 0.067 0.933 35 H 0.105 0.895 36 H 0.108 0.892 37 H 0.071 0.929 38 H 0.089 0.911 39 H 0.084 0.916 40 H 0.101 0.899 41 H 0.072 0.928 42 H 0.066 0.934 43 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -0.167 -10.834 9.791 14.604 hybrid contribution -0.416 -0.011 -1.089 1.166 sum -0.583 -10.844 8.702 13.917 Atomic orbital electron populations 1.23997 0.96209 1.01949 1.01503 1.22972 0.95939 0.97670 0.99445 1.19366 0.94964 0.93046 0.94584 1.22176 0.98502 0.99960 1.00564 1.22039 0.99120 1.03574 0.95685 1.21644 0.98964 0.95976 0.99665 1.20115 0.78907 0.88305 0.80806 1.90522 1.65187 1.51274 1.35905 1.49270 1.42481 1.20624 1.21613 1.23290 1.00880 0.93100 0.86899 1.23144 0.91177 0.90267 0.92222 0.87783 1.24176 0.96172 1.00420 0.98294 1.24865 0.90251 0.86715 0.98975 0.86877 1.22361 0.97636 0.93035 0.81776 1.45224 1.61139 1.23342 1.02492 1.19098 1.29083 1.06570 0.81151 0.90096 1.24820 1.00275 0.97358 0.97819 1.69919 1.41041 1.14445 1.31207 0.86043 0.77692 0.77746 0.84233 1.20445 1.21779 1.21710 0.88922 0.87780 0.87705 0.93128 0.89244 0.93263 0.93681 0.89279 0.93288 0.89505 0.89201 0.92939 0.91143 0.91620 0.89902 0.92792 0.93437 0.93608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.12 13.70 29.02 0.40 -1.72 16 2 C -0.14 -1.60 8.76 -36.02 -0.32 -1.91 16 3 C -0.02 -0.25 0.74 -155.66 -0.11 -0.36 16 4 C -0.16 -2.20 6.83 37.16 0.25 -1.95 16 5 C -0.15 -1.91 8.16 37.16 0.30 -1.61 16 6 C -0.12 -1.70 4.04 -27.88 -0.11 -1.81 16 7 C 0.53 9.21 7.31 -10.98 -0.08 9.13 16 8 O -0.55 -10.69 11.69 5.56 0.06 -10.63 16 9 N -0.61 -10.90 2.95 -155.06 -0.46 -11.36 16 10 C 0.08 1.40 5.99 -1.68 -0.01 1.39 16 11 C 0.14 2.57 5.47 -62.55 -0.34 2.23 16 12 H 0.10 1.70 8.14 -51.93 -0.42 1.28 16 13 C -0.15 -2.52 6.86 -22.10 -0.15 -2.67 16 14 C 0.09 1.80 5.35 -60.96 -0.33 1.48 16 15 H 0.11 2.11 8.05 -51.93 -0.42 1.69 16 16 C 0.18 4.22 4.88 -0.29 0.00 4.22 16 17 N -0.60 -14.22 3.03 -154.76 -0.47 -14.69 16 18 C -0.23 -6.09 10.37 -15.06 -0.16 -6.25 16 19 H 0.08 2.04 7.83 -52.48 -0.41 1.62 16 20 C -0.01 -0.16 5.49 -17.43 -0.10 -0.26 16 21 N -0.92 -26.68 10.56 55.49 0.59 -26.09 16 22 Si 0.91 21.57 29.55 -169.99 -5.02 16.55 16 23 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16 24 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 25 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 26 H 0.09 0.83 8.06 -52.49 -0.42 0.41 16 27 H 0.10 1.13 5.69 -52.48 -0.30 0.83 16 28 H 0.10 1.03 8.06 -52.49 -0.42 0.61 16 29 H 0.05 0.64 7.49 -51.93 -0.39 0.25 16 30 H 0.09 1.52 5.51 -51.93 -0.29 1.23 16 31 H 0.05 0.69 7.50 -51.93 -0.39 0.30 16 32 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.09 1.37 5.51 -51.93 -0.29 1.08 16 34 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 36 H 0.09 1.26 8.14 -51.93 -0.42 0.84 16 37 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.07 1.30 8.14 -51.93 -0.42 0.87 16 39 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 40 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 41 H 0.05 1.42 7.46 -51.93 -0.39 1.03 16 42 H 0.05 1.31 7.68 -51.93 -0.40 0.91 16 43 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 LS Contribution 333.45 15.07 5.03 5.03 Total: -1.00 -29.80 333.45 -8.07 -37.88 By element: Atomic # 1 Polarization: 10.47 SS G_CDS: -7.05 Total: 3.42 kcal Atomic # 6 Polarization: 0.64 SS G_CDS: -0.75 Total: -0.11 kcal Atomic # 7 Polarization: -51.80 SS G_CDS: -0.34 Total: -52.14 kcal Atomic # 8 Polarization: -10.69 SS G_CDS: 0.06 Total: -10.63 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -29.80 -8.07 -37.88 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732145569.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.865 kcal (2) G-P(sol) polarization free energy of solvation -29.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.877 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds