Wall clock time and date at job start Tue Mar 31 2020 01:02:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50706 * 120.00302 * 2 1 4 4 C 1.53005 * 109.46643 * 359.97438 * 3 2 1 5 5 C 1.52995 * 109.47451 * 119.99804 * 3 2 1 6 6 C 1.52997 * 109.46768 * 240.00195 * 3 2 1 7 7 C 1.50706 * 109.47098 * 179.97438 * 6 3 2 8 8 O 1.21281 * 119.99728 * 359.97438 * 7 6 3 9 9 N 1.34771 * 119.99871 * 179.97438 * 7 6 3 10 10 C 1.47864 * 126.94939 * 0.02562 * 9 7 6 11 11 C 1.56017 * 105.10726 * 181.97604 * 10 9 7 12 12 H 1.09003 * 116.24730 * 158.83468 * 11 10 9 13 13 C 1.57084 * 99.60670 * 32.80690 * 11 10 9 14 14 C 1.49294 * 126.94066 * 179.70500 * 9 7 6 15 15 H 1.09002 * 116.15200 * 15.86764 * 14 9 7 16 16 C 1.58430 * 103.70181 * 246.54814 * 14 9 7 17 17 N 1.47870 * 104.83235 * 288.54769 * 16 14 9 18 18 C 1.36941 * 126.94187 * 182.30670 * 17 16 14 19 19 H 1.08003 * 119.99445 * 180.02562 * 18 17 16 20 20 C 1.38809 * 120.00542 * 359.97438 * 18 17 16 21 21 N 1.31625 * 119.99748 * 0.02562 * 20 18 17 22 22 Si 1.86790 * 120.00389 * 179.97438 * 20 18 17 23 23 H 1.48506 * 109.46920 * 0.02562 * 22 20 18 24 24 H 1.48503 * 109.47155 * 120.00200 * 22 20 18 25 25 H 1.48496 * 109.47726 * 240.00697 * 22 20 18 26 26 H 1.08002 * 120.00352 * 180.02562 * 1 2 3 27 27 H 1.08005 * 119.99880 * 359.72812 * 1 2 3 28 28 H 1.07998 * 120.00195 * 179.97438 * 2 1 3 29 29 H 1.08992 * 109.46800 * 60.00369 * 4 3 2 30 30 H 1.09002 * 109.46784 * 180.02562 * 4 3 2 31 31 H 1.09000 * 109.47298 * 299.99960 * 4 3 2 32 32 H 1.08999 * 109.47043 * 59.99814 * 5 3 2 33 33 H 1.09002 * 109.47065 * 179.97438 * 5 3 2 34 34 H 1.08997 * 109.46864 * 300.00066 * 5 3 2 35 35 H 1.09005 * 109.47200 * 299.99038 * 6 3 2 36 36 H 1.09000 * 109.47763 * 59.99678 * 6 3 2 37 37 H 1.09004 * 110.31492 * 300.88520 * 10 9 7 38 38 H 1.09002 * 110.31669 * 62.96866 * 10 9 7 39 39 H 1.08996 * 112.36555 * 64.26902 * 13 11 10 40 40 H 1.08998 * 112.37131 * 191.71807 * 13 11 10 41 41 H 1.08997 * 110.19392 * 169.85830 * 16 14 9 42 42 H 1.08998 * 110.70752 * 47.49652 * 16 14 9 43 43 H 0.96991 * 119.99832 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 1.0692 2.4680 -0.0006 5 6 2.9431 1.3862 1.2492 6 6 2.9431 1.3861 -1.2493 7 6 3.6962 2.6914 -1.2497 8 8 3.5441 3.4795 -0.3405 9 7 4.5388 2.9829 -2.2603 10 6 4.8387 2.1411 -3.4383 11 6 5.9082 2.9391 -4.2468 12 1 6.5183 2.3609 -4.9407 13 6 6.6659 3.6374 -3.0611 14 6 5.3531 4.2240 -2.4200 15 1 5.4658 4.8426 -1.5296 16 6 4.7252 4.9233 -3.6955 17 7 5.1437 4.0786 -4.8347 18 6 4.8827 4.2975 -6.1611 19 1 5.2447 3.6026 -6.9044 20 6 4.1521 5.4118 -6.5502 21 7 3.7105 6.2583 -5.6441 22 14 3.7968 5.7107 -8.3594 23 1 4.3994 4.6211 -9.1688 24 1 2.3281 5.7350 -8.5781 25 1 4.3800 7.0132 -8.7699 26 1 -0.5401 -0.9353 0.0004 27 1 -0.5400 0.9354 0.0044 28 1 1.8500 -0.9353 0.0004 29 1 0.4424 2.4105 0.8891 30 1 1.6143 3.4120 -0.0011 31 1 0.4429 2.4101 -0.8909 32 1 3.6514 0.5577 1.2493 33 1 3.4885 2.3300 1.2489 34 1 2.3164 1.3285 2.1391 35 1 3.6515 0.5576 -1.2492 36 1 2.3165 1.3283 -2.1393 37 1 5.2429 1.1791 -3.1230 38 1 3.9402 1.9951 -4.0378 39 1 7.1652 2.9209 -2.4088 40 1 7.3436 4.4188 -3.4047 41 1 5.1233 5.9319 -3.8059 42 1 3.6379 4.9506 -3.6240 43 1 3.2003 7.0371 -5.9160 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001732145569.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:02:27 Heat of formation + Delta-G solvation = 23.222952 kcal Electronic energy + Delta-G solvation = -22774.047871 eV Core-core repulsion = 19627.843736 eV Total energy + Delta-G solvation = -3146.204135 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.61751 -40.07119 -37.71891 -35.44664 -33.36475 -32.12768 -30.80781 -30.17694 -28.68501 -28.19363 -26.97935 -25.14625 -23.55045 -21.91218 -21.37497 -19.94587 -19.02469 -18.73879 -17.93694 -17.30725 -16.57752 -16.47579 -16.16201 -15.70127 -15.12327 -15.11264 -14.91658 -14.37906 -13.92818 -13.73824 -13.48952 -13.27181 -13.10779 -12.89561 -12.88765 -12.72904 -12.60930 -12.42034 -12.21303 -12.08575 -12.00879 -11.96520 -11.82582 -11.80281 -11.52068 -11.50704 -10.81167 -10.40205 -10.21409 -9.42853 -8.90403 -7.84799 -5.20605 1.42948 1.46668 1.46949 1.57304 1.72982 2.11447 2.48268 3.33650 3.40224 3.60447 3.77845 3.85817 3.92583 3.94827 4.02871 4.15811 4.21740 4.39599 4.46335 4.60850 4.62681 4.73472 4.75302 4.83851 4.88405 4.95949 4.99114 5.03583 5.06950 5.11330 5.16484 5.18716 5.27914 5.45235 5.48418 5.55039 5.59345 5.66054 5.77766 5.98662 6.10237 6.77128 7.03236 7.30009 7.71181 8.42048 9.26484 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.022310 B = 0.004761 C = 0.004391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1254.744623 B = 5879.380002 C = 6375.458013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.147 4.147 3 C -0.019 4.019 4 C -0.152 4.152 5 C -0.142 4.142 6 C -0.114 4.114 7 C 0.521 3.479 8 O -0.575 6.575 9 N -0.613 5.613 10 C 0.092 3.908 11 C 0.134 3.866 12 H 0.133 0.867 13 C -0.128 4.128 14 C 0.100 3.900 15 H 0.113 0.887 16 C 0.189 3.811 17 N -0.618 5.618 18 C -0.228 4.228 19 H 0.096 0.904 20 C -0.072 4.072 21 N -0.959 5.959 22 Si 0.976 3.024 23 H -0.257 1.257 24 H -0.300 1.300 25 H -0.297 1.297 26 H 0.113 0.887 27 H 0.095 0.905 28 H 0.128 0.872 29 H 0.061 0.939 30 H 0.055 0.945 31 H 0.044 0.956 32 H 0.063 0.937 33 H 0.060 0.940 34 H 0.054 0.946 35 H 0.118 0.882 36 H 0.088 0.912 37 H 0.102 0.898 38 H 0.050 0.950 39 H 0.105 0.895 40 H 0.077 0.923 41 H 0.014 0.986 42 H -0.005 1.005 43 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.271 -15.123 9.581 17.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.165 4.165 3 C -0.019 4.019 4 C -0.209 4.209 5 C -0.199 4.199 6 C -0.154 4.154 7 C 0.312 3.688 8 O -0.456 6.456 9 N -0.346 5.346 10 C -0.032 4.032 11 C 0.027 3.973 12 H 0.151 0.849 13 C -0.167 4.167 14 C -0.004 4.004 15 H 0.131 0.869 16 C 0.062 3.938 17 N -0.342 5.342 18 C -0.356 4.356 19 H 0.114 0.886 20 C -0.265 4.265 21 N -0.609 5.609 22 Si 0.805 3.195 23 H -0.181 1.181 24 H -0.228 1.228 25 H -0.224 1.224 26 H 0.131 0.869 27 H 0.113 0.887 28 H 0.145 0.855 29 H 0.080 0.920 30 H 0.074 0.926 31 H 0.063 0.937 32 H 0.082 0.918 33 H 0.079 0.921 34 H 0.073 0.927 35 H 0.136 0.864 36 H 0.106 0.894 37 H 0.120 0.880 38 H 0.068 0.932 39 H 0.123 0.877 40 H 0.096 0.904 41 H 0.032 0.968 42 H 0.014 0.986 43 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 1.016 -14.607 9.936 17.695 hybrid contribution -0.799 1.142 -1.076 1.760 sum 0.218 -13.465 8.861 16.121 Atomic orbital electron populations 1.24153 0.96249 1.02574 1.00489 1.22952 0.96037 0.97173 1.00293 1.19363 0.94665 0.93603 0.94311 1.22114 0.98683 0.99193 1.00926 1.21954 0.99309 1.02751 0.95921 1.21673 0.99176 0.94570 0.99973 1.20860 0.78416 0.89377 0.80154 1.90534 1.65607 1.52464 1.36998 1.49381 1.42776 1.20146 1.22291 1.23188 0.99569 0.94496 0.85991 1.23578 0.91556 0.89126 0.93014 0.84914 1.24077 0.94578 1.00556 0.97504 1.24642 0.91786 0.87225 0.96723 0.86928 1.21955 0.94613 0.92296 0.84893 1.45480 1.61801 1.25145 1.01789 1.19596 1.27262 1.05970 0.82821 0.88581 1.25658 1.01331 0.97854 1.01622 1.70168 1.42670 1.15001 1.33024 0.85029 0.76713 0.77702 0.80036 1.18092 1.22790 1.22435 0.86876 0.88696 0.85465 0.92022 0.92582 0.93654 0.91803 0.92069 0.92657 0.86422 0.89357 0.87973 0.93177 0.87717 0.90403 0.96828 0.98642 0.94769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.66 13.70 67.79 0.93 -2.74 16 2 C -0.15 -2.82 8.76 25.65 0.22 -2.60 16 3 C -0.02 -0.46 0.74 -52.93 -0.04 -0.50 16 4 C -0.15 -4.33 6.83 71.98 0.49 -3.84 16 5 C -0.14 -3.43 8.16 71.98 0.59 -2.84 16 6 C -0.11 -2.91 4.04 29.85 0.12 -2.79 16 7 C 0.52 17.73 7.31 87.66 0.64 18.37 16 8 O -0.57 -22.81 11.69 -3.03 -0.04 -22.84 16 9 N -0.61 -21.29 2.95 -762.89 -2.25 -23.54 16 10 C 0.09 2.80 5.99 87.16 0.52 3.32 16 11 C 0.13 4.51 5.47 46.93 0.26 4.77 16 12 H 0.13 3.75 8.14 -2.39 -0.02 3.73 16 13 C -0.13 -3.93 6.86 33.60 0.23 -3.70 16 14 C 0.10 3.81 5.35 47.96 0.26 4.06 16 15 H 0.11 4.28 8.05 -2.39 -0.02 4.26 16 16 C 0.19 9.45 4.88 88.06 0.43 9.88 16 17 N -0.62 -29.52 3.03 -643.56 -1.95 -31.47 16 18 C -0.23 -12.03 10.37 84.03 0.87 -11.16 16 19 H 0.10 4.67 7.83 -2.91 -0.02 4.65 16 20 C -0.07 -4.06 5.49 84.86 0.47 -3.60 16 21 N -0.96 -58.84 10.56 21.65 0.23 -58.61 16 22 Si 0.98 45.26 29.55 68.60 2.03 47.28 16 23 H -0.26 -10.84 7.11 99.48 0.71 -10.13 16 24 H -0.30 -14.23 7.11 99.48 0.71 -13.53 16 25 H -0.30 -13.95 7.11 99.48 0.71 -13.24 16 26 H 0.11 1.64 8.06 -2.91 -0.02 1.62 16 27 H 0.09 1.91 5.69 -2.91 -0.02 1.90 16 28 H 0.13 1.92 8.06 -2.91 -0.02 1.90 16 29 H 0.06 1.56 7.49 -2.39 -0.02 1.54 16 30 H 0.06 1.98 5.51 -2.39 -0.01 1.97 16 31 H 0.04 1.28 7.50 -2.39 -0.02 1.26 16 32 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 33 H 0.06 1.85 5.51 -2.39 -0.01 1.83 16 34 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 35 H 0.12 2.28 8.14 -2.38 -0.02 2.27 16 36 H 0.09 2.31 8.14 -2.39 -0.02 2.29 16 37 H 0.10 2.19 8.14 -2.39 -0.02 2.17 16 38 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 39 H 0.10 2.49 8.14 -2.39 -0.02 2.48 16 40 H 0.08 2.50 8.14 -2.39 -0.02 2.48 16 41 H 0.01 0.77 7.46 -2.39 -0.02 0.75 16 42 H 0.00 -0.28 7.68 -2.39 -0.02 -0.29 16 43 H 0.24 14.69 8.31 -92.72 -0.77 13.92 16 Total: -1.00 -69.48 333.45 4.98 -64.50 By element: Atomic # 1 Polarization: 17.05 SS G_CDS: 0.97 Total: 18.02 kcal Atomic # 6 Polarization: 0.67 SS G_CDS: 5.99 Total: 6.66 kcal Atomic # 7 Polarization: -109.65 SS G_CDS: -3.97 Total: -113.61 kcal Atomic # 8 Polarization: -22.81 SS G_CDS: -0.04 Total: -22.84 kcal Atomic # 14 Polarization: 45.26 SS G_CDS: 2.03 Total: 47.28 kcal Total: -69.48 4.98 -64.50 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732145569.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.719 kcal (2) G-P(sol) polarization free energy of solvation -69.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.496 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds