Wall clock time and date at job start Tue Mar 31 2020 00:47:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52995 * 109.46980 * 2 1 4 4 C 1.47201 * 109.46830 * 120.00088 * 2 1 3 5 5 C 2.64603 * 109.46989 * 120.00182 * 2 1 3 6 6 C 4.07795 * 109.47072 * 120.00127 * 2 1 3 7 7 O 1.21611 * 120.00212 * 97.72653 * 6 5 4 8 8 N 1.34786 * 120.00159 * 277.72779 * 6 5 4 9 9 C 1.46497 * 119.99977 * 184.97652 * 8 6 5 10 10 C 1.52996 * 109.47302 * 295.81531 * 9 8 6 11 11 C 1.53001 * 109.46964 * 55.81677 * 9 8 6 12 12 N 1.46490 * 109.47671 * 59.99603 * 11 9 8 13 13 C 1.36944 * 120.00321 * 180.02562 * 12 11 9 14 14 H 1.07999 * 119.99819 * 359.97438 * 13 12 11 15 15 C 1.38805 * 119.99833 * 180.02562 * 13 12 11 16 16 N 1.31624 * 119.99944 * 179.97438 * 15 13 12 17 17 Si 1.86801 * 120.00375 * 359.97438 * 15 13 12 18 18 H 1.48501 * 109.47194 * 89.99779 * 17 15 13 19 19 H 1.48499 * 109.47092 * 209.99889 * 17 15 13 20 20 H 1.48497 * 109.47036 * 329.99928 * 17 15 13 21 21 C 1.52995 * 109.46767 * 175.81031 * 9 8 6 22 22 C 1.53002 * 117.49749 * 132.73375 * 21 9 8 23 23 C 1.53002 * 117.49936 * 64.07639 * 21 9 8 24 24 H 1.09000 * 109.46993 * 299.99725 * 1 2 3 25 25 H 1.08997 * 109.47490 * 59.99895 * 1 2 3 26 26 H 1.09004 * 109.47026 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.46993 * 240.00275 * 2 1 3 28 28 H 1.09003 * 109.46895 * 180.02562 * 3 2 1 29 29 H 1.08997 * 109.47095 * 300.00347 * 3 2 1 30 30 H 1.09000 * 109.47033 * 60.00299 * 3 2 1 31 31 H 0.97006 * 119.99623 * 4.97672 * 8 6 5 32 32 H 1.08999 * 109.47646 * 59.99663 * 10 9 8 33 33 H 1.09006 * 109.46755 * 299.99740 * 10 9 8 34 34 H 1.09001 * 109.46909 * 180.02562 * 10 9 8 35 35 H 1.09005 * 109.46993 * 180.02562 * 11 9 8 36 36 H 1.09010 * 109.47061 * 299.99403 * 11 9 8 37 37 H 0.97003 * 119.99864 * 0.02562 * 12 11 9 38 38 H 0.97005 * 120.00071 * 179.97438 * 16 15 13 39 39 H 1.09004 * 115.55642 * 278.39689 * 21 9 8 40 40 H 1.09002 * 117.50065 * 359.97438 * 22 21 9 41 41 H 1.09001 * 117.50331 * 145.02282 * 22 21 9 42 42 H 1.09003 * 117.49836 * 214.97861 * 23 21 9 43 43 H 1.08995 * 117.49747 * 359.97438 * 23 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0206 -0.6939 1.2019 5 6 2.4120 -1.2474 2.1605 6 6 2.8893 -1.9224 3.3296 7 8 3.6996 -2.8231 3.2236 8 7 2.4405 -1.5597 4.5477 9 6 3.0082 -2.1741 5.7503 10 6 2.6883 -3.6702 5.7583 11 6 4.5255 -1.9770 5.7561 12 7 4.8319 -0.5445 5.7484 13 6 6.1349 -0.1229 5.7512 14 1 6.9365 -0.8466 5.7595 15 6 6.4251 1.2344 5.7445 16 7 7.6774 1.6396 5.7477 17 14 5.0385 2.4861 5.7310 18 1 4.6648 2.8260 7.1274 19 1 5.4867 3.7137 5.0257 20 1 3.8618 1.9136 5.0290 21 6 2.4039 -1.5167 6.9926 22 6 1.8989 -2.4382 8.1047 23 6 0.9005 -1.6862 7.2210 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 3.1300 1.4424 -0.0005 29 1 1.6766 1.9563 -0.8899 30 1 1.6767 1.9563 0.8900 31 1 1.7417 -0.8917 4.6279 32 1 3.1188 -4.1386 4.8732 33 1 1.6073 -3.8106 5.7542 34 1 3.1103 -4.1273 6.6533 35 1 4.9479 -2.4346 6.6507 36 1 4.9561 -2.4454 4.8709 37 1 4.1119 0.1055 5.7414 38 1 7.8803 2.5882 5.7427 39 1 2.8545 -0.5696 7.2897 40 1 1.9968 -3.5129 7.9510 41 1 2.0168 -2.0973 9.1333 42 1 0.3621 -0.8507 7.6686 43 1 0.3420 -2.2657 6.4861 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001732279391.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:47:49 Heat of formation + Delta-G solvation = 50.222860 kcal Electronic energy + Delta-G solvation = -22086.082917 eV Core-core repulsion = 18941.049585 eV Total energy + Delta-G solvation = -3145.033331 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.19217 -37.89197 -36.47112 -34.81317 -33.57380 -32.14848 -31.11618 -29.88781 -27.42607 -26.16841 -24.60604 -23.25916 -22.34178 -21.84455 -21.40618 -19.01121 -18.49159 -17.64210 -16.34737 -15.79666 -15.36790 -14.90682 -14.85810 -14.61959 -14.39412 -13.90215 -13.66773 -13.09197 -12.81776 -12.49479 -12.44112 -12.29990 -12.20353 -12.06575 -11.80096 -11.64431 -11.58346 -11.18333 -11.05078 -10.88898 -10.81391 -10.40171 -10.23883 -10.19970 -10.17722 -9.96077 -9.67694 -9.53543 -8.81357 -8.74949 -7.12460 -5.70423 -3.04006 1.77997 2.40491 3.19122 3.36697 3.37915 3.44622 3.78006 3.89378 4.27210 4.62535 4.65004 4.73592 4.89520 4.92669 4.97785 5.04835 5.18197 5.27907 5.36241 5.39000 5.55017 5.58146 5.60592 5.63816 5.67168 5.77745 5.86558 5.92519 5.93588 5.95353 6.04034 6.08754 6.14665 6.30793 6.44149 6.53614 6.80942 7.00120 7.34517 7.73348 8.07518 8.42377 8.48780 9.28135 10.00221 10.21076 11.48598 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.010238 B = 0.007066 C = 0.005044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2734.286305 B = 3961.561015 C = 5549.985412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.011 3.989 3 C -0.148 4.148 4 C -0.091 4.091 5 C -0.211 4.211 6 C 0.639 3.361 7 O -0.514 6.514 8 N -0.704 5.704 9 C 0.199 3.801 10 C -0.163 4.163 11 C 0.145 3.855 12 N -0.750 5.750 13 C -0.233 4.233 14 H 0.090 0.910 15 C 0.002 3.998 16 N -0.936 5.936 17 Si 0.881 3.119 18 H -0.285 1.285 19 H -0.291 1.291 20 H -0.279 1.279 21 C -0.156 4.156 22 C -0.167 4.167 23 C -0.184 4.184 24 H 0.061 0.939 25 H 0.068 0.932 26 H 0.060 0.940 27 H 0.098 0.902 28 H 0.064 0.936 29 H 0.068 0.932 30 H 0.062 0.938 31 H 0.398 0.602 32 H 0.078 0.922 33 H 0.054 0.946 34 H 0.070 0.930 35 H 0.036 0.964 36 H 0.056 0.944 37 H 0.358 0.642 38 H 0.258 0.742 39 H 0.117 0.883 40 H 0.102 0.898 41 H 0.095 0.905 42 H 0.093 0.907 43 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.389 -5.124 -5.446 20.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.007 4.007 3 C -0.205 4.205 4 C -0.093 4.093 5 C -0.214 4.214 6 C 0.425 3.575 7 O -0.390 6.390 8 N -0.354 5.354 9 C 0.114 3.886 10 C -0.221 4.221 11 C 0.018 3.982 12 N -0.396 5.396 13 C -0.363 4.363 14 H 0.108 0.892 15 C -0.193 4.193 16 N -0.585 5.585 17 Si 0.711 3.289 18 H -0.212 1.212 19 H -0.218 1.218 20 H -0.206 1.206 21 C -0.174 4.174 22 C -0.204 4.204 23 C -0.221 4.221 24 H 0.080 0.920 25 H 0.087 0.913 26 H 0.079 0.921 27 H 0.116 0.884 28 H 0.083 0.917 29 H 0.087 0.913 30 H 0.081 0.919 31 H 0.232 0.768 32 H 0.097 0.903 33 H 0.073 0.927 34 H 0.088 0.912 35 H 0.054 0.946 36 H 0.074 0.926 37 H 0.191 0.809 38 H 0.068 0.932 39 H 0.135 0.865 40 H 0.121 0.879 41 H 0.113 0.887 42 H 0.111 0.889 43 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -18.524 -5.787 -5.488 20.168 hybrid contribution -1.131 1.523 0.067 1.899 sum -19.656 -4.263 -5.421 20.830 Atomic orbital electron populations 1.21834 0.93034 1.02566 1.02727 1.18451 0.95969 0.95293 0.91008 1.21854 1.02237 0.93749 1.02678 1.22543 0.95927 0.95392 0.95461 1.20934 1.02335 1.01331 0.96756 1.14560 0.80507 0.81850 0.80559 1.90791 1.32515 1.29563 1.86163 1.45826 1.40924 1.43869 1.04786 1.20154 0.94817 0.92130 0.81514 1.22286 1.01159 0.94908 1.03757 1.21089 0.89759 0.86935 1.00435 1.42611 1.04859 1.01004 1.91138 1.19084 0.83167 0.92211 1.41883 0.89212 1.24630 0.95635 0.96464 1.02580 1.69701 1.16123 1.14405 1.58264 0.86592 0.82558 0.82107 0.77609 1.21198 1.21795 1.20561 1.22541 0.95805 1.02170 0.96919 1.23076 1.02975 0.98687 0.95683 1.22986 0.92078 1.03412 1.03632 0.92008 0.91319 0.92125 0.88382 0.91663 0.91305 0.91927 0.76753 0.90273 0.92738 0.91163 0.94594 0.92589 0.80902 0.93213 0.86492 0.87938 0.88659 0.88872 0.88797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.11 9.15 37.16 0.34 -0.77 16 2 C 0.01 0.11 3.30 -93.41 -0.31 -0.20 16 3 C -0.15 -1.43 9.15 37.15 0.34 -1.09 16 4 C -0.09 -1.29 12.56 -37.12 -0.47 -1.76 16 5 C -0.21 -3.55 13.62 -38.84 -0.53 -4.08 16 6 C 0.64 11.80 7.06 -14.33 -0.10 11.70 16 7 O -0.51 -10.98 13.32 5.27 0.07 -10.91 16 8 N -0.70 -11.31 4.73 -50.02 -0.24 -11.55 16 9 C 0.20 3.21 0.54 -131.82 -0.07 3.14 16 10 C -0.16 -2.28 7.10 37.16 0.26 -2.01 16 11 C 0.15 3.07 4.90 -4.05 -0.02 3.05 16 12 N -0.75 -18.48 4.84 -59.91 -0.29 -18.77 16 13 C -0.23 -6.88 10.47 -15.06 -0.16 -7.04 16 14 H 0.09 2.86 8.06 -52.49 -0.42 2.44 16 15 C 0.00 0.06 5.50 -17.43 -0.10 -0.04 16 16 N -0.94 -30.25 13.97 55.49 0.78 -29.48 16 17 Si 0.88 22.58 27.74 -169.99 -4.71 17.87 16 18 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 19 H -0.29 -7.58 7.11 56.52 0.40 -7.18 16 20 H -0.28 -6.73 6.52 56.52 0.37 -6.36 16 21 C -0.16 -2.22 4.86 -90.62 -0.44 -2.66 16 22 C -0.17 -1.92 9.64 -26.69 -0.26 -2.18 16 23 C -0.18 -2.01 9.72 -26.69 -0.26 -2.27 16 24 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 25 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 26 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 27 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 28 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 29 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 31 H 0.40 5.52 8.34 -40.82 -0.34 5.18 16 32 H 0.08 1.27 6.31 -51.93 -0.33 0.94 16 33 H 0.05 0.65 6.99 -51.93 -0.36 0.29 16 34 H 0.07 0.89 6.78 -51.93 -0.35 0.53 16 35 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 36 H 0.06 1.33 6.04 -51.92 -0.31 1.02 16 37 H 0.36 8.50 4.48 -40.82 -0.18 8.32 16 38 H 0.26 7.92 8.31 -40.82 -0.34 7.58 16 39 H 0.12 1.94 7.08 -51.93 -0.37 1.57 16 40 H 0.10 1.09 5.88 -51.93 -0.31 0.78 16 41 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 42 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 43 H 0.09 0.95 7.35 -51.93 -0.38 0.57 16 LS Contribution 349.93 15.07 5.27 5.27 Total: -1.00 -34.70 349.93 -7.64 -42.34 By element: Atomic # 1 Polarization: 18.18 SS G_CDS: -6.75 Total: 11.43 kcal Atomic # 6 Polarization: -4.44 SS G_CDS: -1.76 Total: -6.20 kcal Atomic # 7 Polarization: -60.05 SS G_CDS: 0.25 Total: -59.80 kcal Atomic # 8 Polarization: -10.98 SS G_CDS: 0.07 Total: -10.91 kcal Atomic # 14 Polarization: 22.58 SS G_CDS: -4.71 Total: 17.87 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -34.70 -7.64 -42.34 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732279391.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.562 kcal (2) G-P(sol) polarization free energy of solvation -34.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.339 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds