Wall clock time and date at job start Tue Mar 31 2020 00:47:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52995 * 109.46980 * 2 1 4 4 C 1.47201 * 109.46830 * 120.00088 * 2 1 3 5 5 C 2.64603 * 109.46989 * 120.00182 * 2 1 3 6 6 C 4.07795 * 109.47072 * 120.00127 * 2 1 3 7 7 O 1.21611 * 120.00212 * 97.72653 * 6 5 4 8 8 N 1.34786 * 120.00159 * 277.72779 * 6 5 4 9 9 C 1.46497 * 119.99977 * 184.97652 * 8 6 5 10 10 C 1.52996 * 109.47302 * 295.81531 * 9 8 6 11 11 C 1.53001 * 109.46964 * 55.81677 * 9 8 6 12 12 N 1.46490 * 109.47671 * 59.99603 * 11 9 8 13 13 C 1.36944 * 120.00321 * 180.02562 * 12 11 9 14 14 H 1.07999 * 119.99819 * 359.97438 * 13 12 11 15 15 C 1.38805 * 119.99833 * 180.02562 * 13 12 11 16 16 N 1.31624 * 119.99944 * 179.97438 * 15 13 12 17 17 Si 1.86801 * 120.00375 * 359.97438 * 15 13 12 18 18 H 1.48501 * 109.47194 * 89.99779 * 17 15 13 19 19 H 1.48499 * 109.47092 * 209.99889 * 17 15 13 20 20 H 1.48497 * 109.47036 * 329.99928 * 17 15 13 21 21 C 1.52995 * 109.46767 * 175.81031 * 9 8 6 22 22 C 1.53002 * 117.49749 * 132.73375 * 21 9 8 23 23 C 1.53002 * 117.49936 * 64.07639 * 21 9 8 24 24 H 1.09000 * 109.46993 * 299.99725 * 1 2 3 25 25 H 1.08997 * 109.47490 * 59.99895 * 1 2 3 26 26 H 1.09004 * 109.47026 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.46993 * 240.00275 * 2 1 3 28 28 H 1.09003 * 109.46895 * 180.02562 * 3 2 1 29 29 H 1.08997 * 109.47095 * 300.00347 * 3 2 1 30 30 H 1.09000 * 109.47033 * 60.00299 * 3 2 1 31 31 H 0.97006 * 119.99623 * 4.97672 * 8 6 5 32 32 H 1.08999 * 109.47646 * 59.99663 * 10 9 8 33 33 H 1.09006 * 109.46755 * 299.99740 * 10 9 8 34 34 H 1.09001 * 109.46909 * 180.02562 * 10 9 8 35 35 H 1.09005 * 109.46993 * 180.02562 * 11 9 8 36 36 H 1.09010 * 109.47061 * 299.99403 * 11 9 8 37 37 H 0.97003 * 119.99864 * 0.02562 * 12 11 9 38 38 H 0.97005 * 120.00071 * 179.97438 * 16 15 13 39 39 H 1.09004 * 115.55642 * 278.39689 * 21 9 8 40 40 H 1.09002 * 117.50065 * 359.97438 * 22 21 9 41 41 H 1.09001 * 117.50331 * 145.02282 * 22 21 9 42 42 H 1.09003 * 117.49836 * 214.97861 * 23 21 9 43 43 H 1.08995 * 117.49747 * 359.97438 * 23 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0206 -0.6939 1.2019 5 6 2.4120 -1.2474 2.1605 6 6 2.8893 -1.9224 3.3296 7 8 3.6996 -2.8231 3.2236 8 7 2.4405 -1.5597 4.5477 9 6 3.0082 -2.1741 5.7503 10 6 2.6883 -3.6702 5.7583 11 6 4.5255 -1.9770 5.7561 12 7 4.8319 -0.5445 5.7484 13 6 6.1349 -0.1229 5.7512 14 1 6.9365 -0.8466 5.7595 15 6 6.4251 1.2344 5.7445 16 7 7.6774 1.6396 5.7477 17 14 5.0385 2.4861 5.7310 18 1 4.6648 2.8260 7.1274 19 1 5.4867 3.7137 5.0257 20 1 3.8618 1.9136 5.0290 21 6 2.4039 -1.5167 6.9926 22 6 1.8989 -2.4382 8.1047 23 6 0.9005 -1.6862 7.2210 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 3.1300 1.4424 -0.0005 29 1 1.6766 1.9563 -0.8899 30 1 1.6767 1.9563 0.8900 31 1 1.7417 -0.8917 4.6279 32 1 3.1188 -4.1386 4.8732 33 1 1.6073 -3.8106 5.7542 34 1 3.1103 -4.1273 6.6533 35 1 4.9479 -2.4346 6.6507 36 1 4.9561 -2.4454 4.8709 37 1 4.1119 0.1055 5.7414 38 1 7.8803 2.5882 5.7427 39 1 2.8545 -0.5696 7.2897 40 1 1.9968 -3.5129 7.9510 41 1 2.0168 -2.0973 9.1333 42 1 0.3621 -0.8507 7.6686 43 1 0.3420 -2.2657 6.4861 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001732279391.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:47:48 Heat of formation + Delta-G solvation = 26.872874 kcal Electronic energy + Delta-G solvation = -22087.095448 eV Core-core repulsion = 18941.049585 eV Total energy + Delta-G solvation = -3146.045863 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.53479 -39.13660 -37.34587 -36.54763 -35.14070 -33.63887 -32.88958 -31.28973 -28.08272 -27.84650 -25.95924 -24.46772 -23.88107 -23.16165 -22.41820 -20.48771 -19.74637 -19.66613 -17.32335 -17.10295 -16.69056 -16.59902 -16.16504 -16.01326 -15.54389 -15.41047 -14.82282 -14.58482 -14.36186 -13.98387 -13.91006 -13.48812 -13.26738 -13.11714 -12.99011 -12.89404 -12.49084 -12.42744 -12.35702 -12.32051 -12.14568 -12.04412 -11.88015 -11.46508 -11.33749 -11.19486 -11.14316 -11.05038 -10.88303 -10.15327 -9.30387 -8.06428 -5.39229 0.50866 1.22330 1.27848 1.34053 1.40953 1.97036 2.42839 2.49787 2.90377 3.19159 3.25277 3.48445 3.68199 3.78525 4.01546 4.09573 4.11182 4.15097 4.15890 4.32771 4.44375 4.57933 4.74987 4.76696 4.80558 4.82881 4.89277 4.93078 4.93738 5.01763 5.05596 5.08680 5.21515 5.29190 5.31448 5.33225 5.39394 5.49452 5.70707 6.16635 6.17923 6.44496 7.03089 7.09041 7.77540 8.00933 9.15834 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.010238 B = 0.007066 C = 0.005044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2734.286305 B = 3961.561015 C = 5549.985412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.004 3.996 3 C -0.148 4.148 4 C -0.053 4.053 5 C -0.274 4.274 6 C 0.633 3.367 7 O -0.557 6.557 8 N -0.693 5.693 9 C 0.207 3.793 10 C -0.155 4.155 11 C 0.144 3.856 12 N -0.745 5.745 13 C -0.234 4.234 14 H 0.047 0.953 15 C -0.064 4.064 16 N -0.984 5.984 17 Si 0.956 3.044 18 H -0.270 1.270 19 H -0.293 1.293 20 H -0.256 1.256 21 C -0.185 4.185 22 C -0.158 4.158 23 C -0.155 4.155 24 H 0.059 0.941 25 H 0.095 0.905 26 H 0.061 0.939 27 H 0.118 0.882 28 H 0.045 0.955 29 H 0.100 0.900 30 H 0.055 0.945 31 H 0.411 0.589 32 H 0.054 0.946 33 H 0.082 0.918 34 H 0.084 0.916 35 H 0.033 0.967 36 H 0.024 0.976 37 H 0.366 0.634 38 H 0.258 0.742 39 H 0.093 0.907 40 H 0.114 0.886 41 H 0.103 0.897 42 H 0.109 0.891 43 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.580 -4.216 -5.789 24.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.013 4.013 3 C -0.205 4.205 4 C -0.055 4.055 5 C -0.277 4.277 6 C 0.421 3.579 7 O -0.437 6.437 8 N -0.343 5.343 9 C 0.122 3.878 10 C -0.213 4.213 11 C 0.016 3.984 12 N -0.391 5.391 13 C -0.365 4.365 14 H 0.065 0.935 15 C -0.255 4.255 16 N -0.635 5.635 17 Si 0.783 3.217 18 H -0.196 1.196 19 H -0.219 1.219 20 H -0.181 1.181 21 C -0.204 4.204 22 C -0.195 4.195 23 C -0.192 4.192 24 H 0.078 0.922 25 H 0.114 0.886 26 H 0.080 0.920 27 H 0.136 0.864 28 H 0.064 0.936 29 H 0.118 0.882 30 H 0.075 0.925 31 H 0.247 0.753 32 H 0.073 0.927 33 H 0.101 0.899 34 H 0.103 0.897 35 H 0.051 0.949 36 H 0.042 0.958 37 H 0.200 0.800 38 H 0.067 0.933 39 H 0.111 0.889 40 H 0.132 0.868 41 H 0.122 0.878 42 H 0.127 0.873 43 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -22.773 -4.893 -5.811 24.007 hybrid contribution 0.244 1.196 0.111 1.226 sum -22.529 -3.697 -5.701 23.531 Atomic orbital electron populations 1.21833 0.90714 1.03107 1.03998 1.18874 0.97780 0.95157 0.89526 1.21885 1.01040 0.93597 1.03987 1.23565 0.93462 0.93414 0.95063 1.20920 1.05088 1.03701 0.97958 1.14884 0.79953 0.81447 0.81659 1.90762 1.34499 1.31540 1.86902 1.45796 1.40665 1.43711 1.04154 1.20010 0.91191 0.93982 0.82643 1.22224 1.02884 0.92903 1.03283 1.21143 0.94016 0.84553 0.98644 1.42476 1.03093 1.02716 1.90809 1.19016 0.84376 0.91810 1.41315 0.93459 1.25512 0.98683 0.98728 1.02586 1.69901 1.18914 1.14918 1.59776 0.85393 0.79432 0.78451 0.78462 1.19561 1.21932 1.18100 1.22302 0.98795 1.02095 0.97190 1.23221 1.01948 0.98963 0.95392 1.23095 0.89784 1.03462 1.02872 0.92205 0.88629 0.91991 0.86442 0.93584 0.88153 0.92535 0.75299 0.92738 0.89886 0.89745 0.94869 0.95773 0.80041 0.93279 0.88892 0.86806 0.87830 0.87260 0.87390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.65 9.15 71.98 0.66 -0.99 16 2 C 0.00 0.08 3.30 -12.60 -0.04 0.04 16 3 C -0.15 -2.47 9.15 71.98 0.66 -1.81 16 4 C -0.05 -1.43 12.56 31.13 0.39 -1.04 16 5 C -0.27 -9.26 13.62 30.01 0.41 -8.85 16 6 C 0.63 23.97 7.06 85.48 0.60 24.57 16 7 O -0.56 -25.10 13.32 -4.07 -0.05 -25.15 16 8 N -0.69 -21.98 4.73 -430.42 -2.03 -24.02 16 9 C 0.21 6.60 0.54 3.60 0.00 6.60 16 10 C -0.15 -4.18 7.10 71.98 0.51 -3.67 16 11 C 0.14 6.30 4.90 86.38 0.42 6.72 16 12 N -0.74 -37.60 4.84 -343.45 -1.66 -39.26 16 13 C -0.23 -14.41 10.47 84.03 0.88 -13.53 16 14 H 0.05 3.24 8.06 -2.91 -0.02 3.21 16 15 C -0.06 -3.96 5.50 84.86 0.47 -3.49 16 16 N -0.98 -65.73 13.97 21.65 0.30 -65.43 16 17 Si 0.96 46.92 27.74 68.60 1.90 48.82 16 18 H -0.27 -12.58 7.11 99.48 0.71 -11.87 16 19 H -0.29 -14.41 7.11 99.48 0.71 -13.71 16 20 H -0.26 -11.44 6.52 99.48 0.65 -10.79 16 21 C -0.18 -4.92 4.86 -10.79 -0.05 -4.97 16 22 C -0.16 -3.14 9.64 30.62 0.30 -2.84 16 23 C -0.16 -2.79 9.72 30.62 0.30 -2.49 16 24 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 25 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 26 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 27 H 0.12 1.65 8.14 -2.39 -0.02 1.63 16 28 H 0.04 0.94 8.14 -2.39 -0.02 0.92 16 29 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 30 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 31 H 0.41 10.75 8.34 -92.70 -0.77 9.98 16 32 H 0.05 1.77 6.31 -2.39 -0.02 1.76 16 33 H 0.08 1.76 6.99 -2.38 -0.02 1.75 16 34 H 0.08 2.01 6.78 -2.39 -0.02 1.99 16 35 H 0.03 1.46 8.14 -2.38 -0.02 1.44 16 36 H 0.02 1.23 6.04 -2.38 -0.01 1.22 16 37 H 0.37 17.24 4.48 -92.71 -0.42 16.83 16 38 H 0.26 16.30 8.31 -92.70 -0.77 15.53 16 39 H 0.09 2.96 7.08 -2.39 -0.02 2.95 16 40 H 0.11 2.01 5.88 -2.39 -0.01 1.99 16 41 H 0.10 1.91 8.14 -2.39 -0.02 1.89 16 42 H 0.11 1.67 8.14 -2.39 -0.02 1.65 16 43 H 0.11 1.68 7.35 -2.39 -0.02 1.66 16 Total: -1.00 -80.36 349.93 3.73 -76.63 By element: Atomic # 1 Polarization: 34.38 SS G_CDS: -0.23 Total: 34.16 kcal Atomic # 6 Polarization: -11.26 SS G_CDS: 5.50 Total: -5.76 kcal Atomic # 7 Polarization: -125.31 SS G_CDS: -3.39 Total: -128.70 kcal Atomic # 8 Polarization: -25.10 SS G_CDS: -0.05 Total: -25.15 kcal Atomic # 14 Polarization: 46.92 SS G_CDS: 1.90 Total: 48.82 kcal Total: -80.36 3.73 -76.63 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732279391.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.505 kcal (2) G-P(sol) polarization free energy of solvation -80.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.632 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds