Wall clock time and date at job start Tue Mar 31 2020 00:49:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17393 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 C 1.53002 * 109.47021 * 130.25800 * 3 2 1 5 5 C 1.52996 * 109.46972 * 179.97438 * 4 3 2 6 6 C 1.50708 * 109.46729 * 180.02562 * 5 4 3 7 7 O 1.21275 * 119.99870 * 0.02562 * 6 5 4 8 8 N 1.34777 * 119.99487 * 179.97438 * 6 5 4 9 9 C 1.46500 * 119.99750 * 179.97438 * 8 6 5 10 10 H 1.09004 * 110.01882 * 325.70336 * 9 8 6 11 11 C 1.54263 * 110.03326 * 87.09414 * 9 8 6 12 12 C 1.55006 * 104.13642 * 95.68738 * 11 9 8 13 13 C 1.54891 * 102.75727 * 37.95313 * 12 11 9 14 14 C 1.53871 * 110.03463 * 204.31582 * 9 8 6 15 15 H 1.08998 * 110.03247 * 359.97438 * 14 9 8 16 16 C 1.52998 * 110.03868 * 121.42922 * 14 9 8 17 17 N 1.46495 * 109.47467 * 185.00013 * 16 14 9 18 18 C 1.36934 * 120.00327 * 180.02562 * 17 16 14 19 19 H 1.08003 * 119.99609 * 359.97438 * 18 17 16 20 20 C 1.38810 * 120.00278 * 180.02562 * 18 17 16 21 21 N 1.31623 * 120.00015 * 179.97438 * 20 18 17 22 22 Si 1.86803 * 119.99868 * 359.97438 * 20 18 17 23 23 H 1.48495 * 109.46956 * 90.00457 * 22 20 18 24 24 H 1.48505 * 109.46855 * 210.00235 * 22 20 18 25 25 H 1.48493 * 109.47208 * 330.00257 * 22 20 18 26 26 H 4.44651 * 5.63304 * 180.02562 * 4 1 2 27 27 H 1.08996 * 109.47366 * 250.26237 * 3 2 1 28 28 H 1.09000 * 109.47090 * 10.26048 * 3 2 1 29 29 H 1.08996 * 109.47407 * 300.00412 * 4 3 2 30 30 H 1.09004 * 109.46733 * 59.99729 * 4 3 2 31 31 H 1.09000 * 109.47380 * 299.99696 * 5 4 3 32 32 H 1.08996 * 109.47134 * 60.00785 * 5 4 3 33 33 H 0.96996 * 120.00263 * 0.02562 * 8 6 5 34 34 H 1.09003 * 110.48716 * 214.35366 * 11 9 8 35 35 H 1.08999 * 110.48829 * 336.99678 * 11 9 8 36 36 H 1.08999 * 110.76275 * 279.63052 * 12 11 9 37 37 H 1.09003 * 110.90242 * 156.34114 * 12 11 9 38 38 H 1.08996 * 110.48559 * 203.37193 * 13 12 11 39 39 H 1.08991 * 110.48866 * 80.72313 * 13 12 11 40 40 H 1.08999 * 109.46774 * 305.00553 * 16 14 9 41 41 H 1.08996 * 109.46938 * 64.99811 * 16 14 9 42 42 H 0.97003 * 119.99765 * 359.97438 * 17 16 14 43 43 H 0.96998 * 120.00035 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1555 0.9331 -1.1009 5 6 4.6855 0.9343 -1.1004 6 6 5.1874 1.8532 -2.1844 7 8 4.3990 2.4488 -2.8875 8 7 6.5124 2.0138 -2.3715 9 6 7.0003 2.9067 -3.4256 10 1 6.3275 2.8748 -4.2826 11 6 7.1052 4.3493 -2.8895 12 6 8.5885 4.4870 -2.4610 13 6 9.3374 3.6959 -3.5620 14 6 8.4188 2.4913 -3.8535 15 1 8.7444 1.6257 -3.2766 16 6 8.4410 2.1648 -5.3480 17 7 9.7648 1.6575 -5.7175 18 6 10.0230 1.2977 -7.0132 19 1 9.2506 1.3875 -7.7627 20 6 11.2771 0.8165 -7.3631 21 7 11.5252 0.4702 -8.6085 22 14 12.6128 0.6604 -6.0665 23 1 12.5437 -0.6861 -5.4444 24 1 13.9427 0.8449 -6.7012 25 1 12.4138 1.6985 -5.0235 26 1 -1.0502 -0.0001 0.0004 27 1 3.0092 0.3479 0.9672 28 1 3.0098 -1.0104 -0.1831 29 1 2.7923 0.5859 -2.0681 30 1 2.7917 1.9442 -0.9178 31 1 5.0484 1.2819 -0.1332 32 1 5.0497 -0.0767 -1.2833 33 1 7.1429 1.5377 -1.8089 34 1 6.8665 5.0665 -3.6749 35 1 6.4455 4.4869 -2.0327 36 1 8.7515 4.0356 -1.4823 37 1 8.8972 5.5325 -2.4587 38 1 10.3064 3.3569 -3.1958 39 1 9.4591 4.3079 -4.4557 40 1 7.6879 1.4076 -5.5657 41 1 8.2250 3.0670 -5.9202 42 1 10.4586 1.5772 -5.0443 43 1 12.4017 0.1343 -8.8531 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001732613717.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:49:02 Heat of formation + Delta-G solvation = 2.086001 kcal Electronic energy + Delta-G solvation = -21065.060124 eV Core-core repulsion = 17917.939421 eV Total energy + Delta-G solvation = -3147.120702 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.15238 -38.23083 -35.83675 -34.67318 -33.49153 -32.49277 -31.53254 -29.11210 -28.72879 -27.17607 -24.61591 -22.83942 -21.76704 -20.98206 -20.04238 -19.65619 -18.47425 -17.64756 -16.75132 -16.51368 -16.12539 -15.16416 -14.90008 -14.45545 -14.39486 -14.18092 -13.88773 -13.69255 -13.19051 -12.90284 -12.81086 -12.64417 -12.16680 -11.89851 -11.83504 -11.48264 -11.26211 -11.09652 -10.93891 -10.84714 -10.69187 -10.52242 -10.48988 -10.40256 -10.37164 -10.12293 -9.80303 -9.59201 -9.02648 -8.89475 -7.23241 -5.76681 -3.12212 2.52170 2.57339 2.60692 3.15668 3.35391 3.37514 3.43725 4.07874 4.49204 4.58105 4.60036 4.68283 4.74394 4.78908 4.97413 5.15853 5.17487 5.29895 5.30799 5.32060 5.47686 5.53149 5.59439 5.69799 5.74893 5.75717 5.78317 5.83398 5.85859 5.96639 6.00844 6.11301 6.15464 6.32732 6.47047 6.53984 6.67610 6.79905 7.35340 7.47486 7.99915 8.20523 8.42293 9.21375 9.93437 10.13543 11.41861 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.021847 B = 0.003130 C = 0.002922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1281.362141 B = 8944.041863 C = 9581.235646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.185 4.185 3 C -0.014 4.014 4 C -0.099 4.099 5 C -0.142 4.142 6 C 0.510 3.490 7 O -0.541 6.541 8 N -0.721 5.721 9 C 0.145 3.855 10 H 0.094 0.906 11 C -0.129 4.129 12 C -0.125 4.125 13 C -0.116 4.116 14 C -0.107 4.107 15 H 0.076 0.924 16 C 0.165 3.835 17 N -0.754 5.754 18 C -0.243 4.243 19 H 0.090 0.910 20 C 0.003 3.997 21 N -0.935 5.935 22 Si 0.885 3.115 23 H -0.285 1.285 24 H -0.291 1.291 25 H -0.277 1.277 26 H 0.216 0.784 27 H 0.086 0.914 28 H 0.088 0.912 29 H 0.075 0.925 30 H 0.073 0.927 31 H 0.094 0.906 32 H 0.096 0.904 33 H 0.399 0.601 34 H 0.074 0.926 35 H 0.064 0.936 36 H 0.061 0.939 37 H 0.064 0.936 38 H 0.065 0.935 39 H 0.076 0.924 40 H 0.027 0.973 41 H 0.030 0.970 42 H 0.360 0.640 43 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.815 2.804 21.451 25.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.185 4.185 3 C -0.051 4.051 4 C -0.137 4.137 5 C -0.182 4.182 6 C 0.297 3.703 7 O -0.418 6.418 8 N -0.372 5.372 9 C 0.041 3.959 10 H 0.112 0.888 11 C -0.168 4.168 12 C -0.162 4.162 13 C -0.154 4.154 14 C -0.126 4.126 15 H 0.095 0.905 16 C 0.038 3.962 17 N -0.400 5.400 18 C -0.373 4.373 19 H 0.108 0.892 20 C -0.193 4.193 21 N -0.583 5.583 22 Si 0.716 3.284 23 H -0.212 1.212 24 H -0.217 1.217 25 H -0.203 1.203 26 H 0.233 0.767 27 H 0.105 0.895 28 H 0.106 0.894 29 H 0.094 0.906 30 H 0.092 0.908 31 H 0.112 0.888 32 H 0.114 0.886 33 H 0.233 0.767 34 H 0.093 0.907 35 H 0.083 0.917 36 H 0.080 0.920 37 H 0.083 0.917 38 H 0.083 0.917 39 H 0.095 0.905 40 H 0.044 0.956 41 H 0.048 0.952 42 H 0.193 0.807 43 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -14.409 3.194 20.672 25.400 hybrid contribution 1.246 -0.476 1.068 1.709 sum -13.163 2.718 21.740 25.560 Atomic orbital electron populations 1.24919 0.96025 1.01073 1.00962 1.23112 0.94602 1.00375 1.00411 1.18780 0.84878 1.01229 1.00190 1.21273 0.93010 1.00407 0.99041 1.21691 0.97397 1.00542 0.98588 1.20649 0.82367 0.82307 0.84996 1.90713 1.55247 1.48322 1.47488 1.46224 1.06913 1.47476 1.36634 1.21630 0.95508 0.88605 0.90200 0.88810 1.22750 0.96667 0.96388 1.00988 1.22548 0.95037 1.00170 0.98475 1.22420 0.97913 0.96179 0.98880 1.22275 0.93115 0.98554 0.98676 0.90528 1.20711 0.88474 0.96823 0.90179 1.42676 1.09557 1.79384 1.08364 1.19071 0.97965 1.35190 0.85049 0.89244 1.24682 0.97336 1.01295 0.95972 1.69705 1.22423 1.50013 1.16124 0.86533 0.82472 0.77824 0.81612 1.21163 1.21749 1.20322 0.76713 0.89530 0.89404 0.90611 0.90782 0.88781 0.88558 0.76711 0.90720 0.91681 0.91997 0.91695 0.91671 0.90543 0.95556 0.95201 0.80706 0.93075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -1.81 19.25 29.55 0.57 -1.24 16 2 C -0.18 -1.71 13.34 -37.12 -0.50 -2.20 16 3 C -0.01 -0.10 5.70 -29.51 -0.17 -0.27 16 4 C -0.10 -0.85 4.46 -26.73 -0.12 -0.97 16 5 C -0.14 -1.04 5.70 -27.88 -0.16 -1.20 16 6 C 0.51 5.89 7.82 -10.98 -0.09 5.80 16 7 O -0.54 -8.55 15.65 5.56 0.09 -8.46 16 8 N -0.72 -7.68 5.04 -52.72 -0.27 -7.95 16 9 C 0.15 1.88 2.89 -66.82 -0.19 1.69 16 10 H 0.09 1.43 7.12 -51.93 -0.37 1.06 16 11 C -0.13 -1.51 6.54 -25.01 -0.16 -1.67 16 12 C -0.12 -1.35 6.91 -24.67 -0.17 -1.52 16 13 C -0.12 -1.57 6.08 -25.07 -0.15 -1.73 16 14 C -0.11 -1.53 2.73 -89.50 -0.24 -1.78 16 15 H 0.08 1.05 7.61 -51.93 -0.40 0.66 16 16 C 0.17 3.17 5.31 -4.05 -0.02 3.15 16 17 N -0.75 -17.72 5.25 -59.91 -0.31 -18.04 16 18 C -0.24 -6.91 10.47 -15.06 -0.16 -7.07 16 19 H 0.09 2.75 8.06 -52.48 -0.42 2.32 16 20 C 0.00 0.08 5.50 -17.43 -0.10 -0.02 16 21 N -0.93 -29.53 13.97 55.49 0.78 -28.75 16 22 Si 0.89 21.94 27.74 -169.99 -4.71 17.23 16 23 H -0.28 -7.00 7.11 56.52 0.40 -6.59 16 24 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 25 H -0.28 -6.38 6.52 56.52 0.37 -6.01 16 26 H 0.22 1.11 7.80 -54.08 -0.42 0.69 16 27 H 0.09 0.46 8.14 -51.93 -0.42 0.03 16 28 H 0.09 0.50 8.14 -51.93 -0.42 0.07 16 29 H 0.08 0.78 8.10 -51.93 -0.42 0.36 16 30 H 0.07 0.73 8.10 -51.93 -0.42 0.30 16 31 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.10 0.56 8.14 -51.93 -0.42 0.13 16 33 H 0.40 3.22 8.31 -40.82 -0.34 2.88 16 34 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.06 0.75 8.04 -51.93 -0.42 0.33 16 36 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 38 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 39 H 0.08 1.15 7.76 -51.93 -0.40 0.75 16 40 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.03 0.59 8.00 -51.93 -0.42 0.18 16 42 H 0.36 8.16 5.41 -40.82 -0.22 7.94 16 43 H 0.26 7.78 8.31 -40.82 -0.34 7.44 16 LS Contribution 356.99 15.07 5.38 5.38 Total: -1.00 -34.55 356.99 -7.93 -42.48 By element: Atomic # 1 Polarization: 14.35 SS G_CDS: -7.22 Total: 7.13 kcal Atomic # 6 Polarization: -7.37 SS G_CDS: -1.66 Total: -9.03 kcal Atomic # 7 Polarization: -54.93 SS G_CDS: 0.19 Total: -54.73 kcal Atomic # 8 Polarization: -8.55 SS G_CDS: 0.09 Total: -8.46 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -4.71 Total: 17.23 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -34.55 -7.93 -42.48 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732613717.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.568 kcal (2) G-P(sol) polarization free energy of solvation -34.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.482 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds