Wall clock time and date at job start Tue Mar 31 2020 00:49:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17393 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 C 1.53002 * 109.47021 * 130.25800 * 3 2 1 5 5 C 1.52996 * 109.46972 * 179.97438 * 4 3 2 6 6 C 1.50708 * 109.46729 * 180.02562 * 5 4 3 7 7 O 1.21275 * 119.99870 * 0.02562 * 6 5 4 8 8 N 1.34777 * 119.99487 * 179.97438 * 6 5 4 9 9 C 1.46500 * 119.99750 * 179.97438 * 8 6 5 10 10 H 1.09004 * 110.01882 * 325.70336 * 9 8 6 11 11 C 1.54263 * 110.03326 * 87.09414 * 9 8 6 12 12 C 1.55006 * 104.13642 * 95.68738 * 11 9 8 13 13 C 1.54891 * 102.75727 * 37.95313 * 12 11 9 14 14 C 1.53871 * 110.03463 * 204.31582 * 9 8 6 15 15 H 1.08998 * 110.03247 * 359.97438 * 14 9 8 16 16 C 1.52998 * 110.03868 * 121.42922 * 14 9 8 17 17 N 1.46495 * 109.47467 * 185.00013 * 16 14 9 18 18 C 1.36934 * 120.00327 * 180.02562 * 17 16 14 19 19 H 1.08003 * 119.99609 * 359.97438 * 18 17 16 20 20 C 1.38810 * 120.00278 * 180.02562 * 18 17 16 21 21 N 1.31623 * 120.00015 * 179.97438 * 20 18 17 22 22 Si 1.86803 * 119.99868 * 359.97438 * 20 18 17 23 23 H 1.48495 * 109.46956 * 90.00457 * 22 20 18 24 24 H 1.48505 * 109.46855 * 210.00235 * 22 20 18 25 25 H 1.48493 * 109.47208 * 330.00257 * 22 20 18 26 26 H 4.44651 * 5.63304 * 180.02562 * 4 1 2 27 27 H 1.08996 * 109.47366 * 250.26237 * 3 2 1 28 28 H 1.09000 * 109.47090 * 10.26048 * 3 2 1 29 29 H 1.08996 * 109.47407 * 300.00412 * 4 3 2 30 30 H 1.09004 * 109.46733 * 59.99729 * 4 3 2 31 31 H 1.09000 * 109.47380 * 299.99696 * 5 4 3 32 32 H 1.08996 * 109.47134 * 60.00785 * 5 4 3 33 33 H 0.96996 * 120.00263 * 0.02562 * 8 6 5 34 34 H 1.09003 * 110.48716 * 214.35366 * 11 9 8 35 35 H 1.08999 * 110.48829 * 336.99678 * 11 9 8 36 36 H 1.08999 * 110.76275 * 279.63052 * 12 11 9 37 37 H 1.09003 * 110.90242 * 156.34114 * 12 11 9 38 38 H 1.08996 * 110.48559 * 203.37193 * 13 12 11 39 39 H 1.08991 * 110.48866 * 80.72313 * 13 12 11 40 40 H 1.08999 * 109.46774 * 305.00553 * 16 14 9 41 41 H 1.08996 * 109.46938 * 64.99811 * 16 14 9 42 42 H 0.97003 * 119.99765 * 359.97438 * 17 16 14 43 43 H 0.96998 * 120.00035 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1555 0.9331 -1.1009 5 6 4.6855 0.9343 -1.1004 6 6 5.1874 1.8532 -2.1844 7 8 4.3990 2.4488 -2.8875 8 7 6.5124 2.0138 -2.3715 9 6 7.0003 2.9067 -3.4256 10 1 6.3275 2.8748 -4.2826 11 6 7.1052 4.3493 -2.8895 12 6 8.5885 4.4870 -2.4610 13 6 9.3374 3.6959 -3.5620 14 6 8.4188 2.4913 -3.8535 15 1 8.7444 1.6257 -3.2766 16 6 8.4410 2.1648 -5.3480 17 7 9.7648 1.6575 -5.7175 18 6 10.0230 1.2977 -7.0132 19 1 9.2506 1.3875 -7.7627 20 6 11.2771 0.8165 -7.3631 21 7 11.5252 0.4702 -8.6085 22 14 12.6128 0.6604 -6.0665 23 1 12.5437 -0.6861 -5.4444 24 1 13.9427 0.8449 -6.7012 25 1 12.4138 1.6985 -5.0235 26 1 -1.0502 -0.0001 0.0004 27 1 3.0092 0.3479 0.9672 28 1 3.0098 -1.0104 -0.1831 29 1 2.7923 0.5859 -2.0681 30 1 2.7917 1.9442 -0.9178 31 1 5.0484 1.2819 -0.1332 32 1 5.0497 -0.0767 -1.2833 33 1 7.1429 1.5377 -1.8089 34 1 6.8665 5.0665 -3.6749 35 1 6.4455 4.4869 -2.0327 36 1 8.7515 4.0356 -1.4823 37 1 8.8972 5.5325 -2.4587 38 1 10.3064 3.3569 -3.1958 39 1 9.4591 4.3079 -4.4557 40 1 7.6879 1.4076 -5.5657 41 1 8.2250 3.0670 -5.9202 42 1 10.4586 1.5772 -5.0443 43 1 12.4017 0.1343 -8.8531 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001732613717.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:49:01 Heat of formation + Delta-G solvation = -20.987356 kcal Electronic energy + Delta-G solvation = -21066.060660 eV Core-core repulsion = 17917.939421 eV Total energy + Delta-G solvation = -3148.121238 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.13248 -39.32030 -36.60485 -36.34081 -34.56765 -33.54022 -33.13888 -30.60241 -29.56969 -28.02549 -26.26235 -23.96140 -23.25417 -21.88635 -21.13719 -20.72836 -19.67408 -19.02868 -17.69531 -17.59151 -16.85867 -16.44395 -16.24529 -15.81137 -15.56806 -15.12118 -15.05548 -14.83681 -14.55572 -14.39692 -13.71838 -13.64269 -13.43706 -13.37643 -12.89023 -12.57813 -12.49200 -12.33257 -12.14516 -11.93814 -11.90500 -11.83796 -11.76078 -11.69366 -11.47011 -11.15863 -10.98398 -10.95863 -10.76989 -9.99950 -9.32265 -8.03604 -5.38380 1.37417 1.42964 1.50536 1.72506 1.85822 1.93596 2.30022 2.48640 3.26816 3.38268 3.54006 3.65895 3.77770 3.90406 3.94129 4.11479 4.20334 4.36125 4.45642 4.49557 4.55344 4.61141 4.66883 4.70433 4.75337 4.77346 4.83369 4.97847 5.00444 5.08268 5.16765 5.22288 5.22410 5.25257 5.32411 5.35936 5.49478 5.66405 5.73459 6.19691 6.65132 6.73207 7.06605 7.36082 7.80672 8.03493 9.18140 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.021847 B = 0.003130 C = 0.002922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1281.362141 B = 8944.041863 C = 9581.235646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.216 4.216 3 C -0.010 4.010 4 C -0.095 4.095 5 C -0.131 4.131 6 C 0.504 3.496 7 O -0.592 6.592 8 N -0.710 5.710 9 C 0.150 3.850 10 H 0.061 0.939 11 C -0.125 4.125 12 C -0.110 4.110 13 C -0.118 4.118 14 C -0.094 4.094 15 H 0.093 0.907 16 C 0.163 3.837 17 N -0.751 5.751 18 C -0.240 4.240 19 H 0.048 0.952 20 C -0.067 4.067 21 N -0.986 5.986 22 Si 0.962 3.038 23 H -0.275 1.275 24 H -0.296 1.296 25 H -0.244 1.244 26 H 0.238 0.762 27 H 0.109 0.891 28 H 0.104 0.896 29 H 0.047 0.953 30 H 0.055 0.945 31 H 0.130 0.870 32 H 0.121 0.879 33 H 0.416 0.584 34 H 0.065 0.935 35 H 0.071 0.929 36 H 0.085 0.915 37 H 0.076 0.924 38 H 0.072 0.928 39 H 0.055 0.945 40 H 0.012 0.988 41 H 0.018 0.982 42 H 0.369 0.631 43 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.751 2.632 25.588 28.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.216 4.216 3 C -0.047 4.047 4 C -0.133 4.133 5 C -0.170 4.170 6 C 0.293 3.707 7 O -0.473 6.473 8 N -0.363 5.363 9 C 0.044 3.956 10 H 0.080 0.920 11 C -0.163 4.163 12 C -0.147 4.147 13 C -0.156 4.156 14 C -0.113 4.113 15 H 0.111 0.889 16 C 0.037 3.963 17 N -0.397 5.397 18 C -0.371 4.371 19 H 0.066 0.934 20 C -0.259 4.259 21 N -0.636 5.636 22 Si 0.788 3.212 23 H -0.201 1.201 24 H -0.223 1.223 25 H -0.168 1.168 26 H 0.255 0.745 27 H 0.128 0.872 28 H 0.122 0.878 29 H 0.066 0.934 30 H 0.073 0.927 31 H 0.148 0.852 32 H 0.139 0.861 33 H 0.253 0.747 34 H 0.084 0.916 35 H 0.090 0.910 36 H 0.103 0.897 37 H 0.095 0.905 38 H 0.090 0.910 39 H 0.074 0.926 40 H 0.030 0.970 41 H 0.036 0.964 42 H 0.203 0.797 43 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -13.358 3.027 24.870 28.392 hybrid contribution 0.772 -0.412 -0.340 0.939 sum -12.586 2.615 24.530 27.694 Atomic orbital electron populations 1.25712 0.97138 1.00637 1.00516 1.23882 0.95926 1.00899 1.00934 1.18862 0.83661 1.01672 1.00468 1.21171 0.94109 0.99675 0.98356 1.21717 0.96112 1.00725 0.98451 1.21458 0.82010 0.82064 0.85199 1.90701 1.56483 1.50496 1.49582 1.46086 1.07206 1.46998 1.35965 1.21368 0.93862 0.90144 0.90229 0.92040 1.22692 0.97818 0.94965 1.00869 1.22482 0.93188 1.00670 0.98352 1.22408 0.98308 0.95678 0.99160 1.22123 0.94478 0.99835 0.94860 0.88871 1.20814 0.86070 0.95532 0.93884 1.42583 1.11319 1.79233 1.06592 1.19013 0.97090 1.34556 0.86447 0.93369 1.25624 1.00269 1.01373 0.98588 1.69912 1.23145 1.51616 1.18945 0.85309 0.77909 0.78972 0.79007 1.20102 1.22314 1.16833 0.74503 0.87248 0.87793 0.93365 0.92654 0.85197 0.86123 0.74675 0.91638 0.91041 0.89668 0.90523 0.90956 0.92621 0.96974 0.96378 0.79686 0.93265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -3.63 19.25 74.32 1.43 -2.20 16 2 C -0.22 -3.80 13.34 31.13 0.42 -3.38 16 3 C -0.01 -0.12 5.70 28.79 0.16 0.04 16 4 C -0.09 -1.52 4.46 30.59 0.14 -1.39 16 5 C -0.13 -1.54 5.70 29.85 0.17 -1.37 16 6 C 0.50 10.92 7.82 87.66 0.69 11.61 16 7 O -0.59 -19.04 15.65 -3.01 -0.05 -19.09 16 8 N -0.71 -13.49 5.04 -439.10 -2.21 -15.71 16 9 C 0.15 3.72 2.89 45.71 0.13 3.85 16 10 H 0.06 1.95 7.12 -2.38 -0.02 1.93 16 11 C -0.12 -2.69 6.54 31.71 0.21 -2.48 16 12 C -0.11 -1.99 6.91 31.93 0.22 -1.77 16 13 C -0.12 -2.88 6.08 31.67 0.19 -2.69 16 14 C -0.09 -2.53 2.73 -10.07 -0.03 -2.55 16 15 H 0.09 2.24 7.61 -2.39 -0.02 2.22 16 16 C 0.16 6.33 5.31 86.38 0.46 6.79 16 17 N -0.75 -34.95 5.25 -343.47 -1.80 -36.76 16 18 C -0.24 -14.00 10.47 84.03 0.88 -13.12 16 19 H 0.05 3.13 8.06 -2.91 -0.02 3.11 16 20 C -0.07 -4.00 5.50 84.86 0.47 -3.53 16 21 N -0.99 -63.98 13.97 21.65 0.30 -63.67 16 22 Si 0.96 44.63 27.74 68.60 1.90 46.53 16 23 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 24 H -0.30 -13.98 7.11 99.48 0.71 -13.28 16 25 H -0.24 -9.90 6.52 99.48 0.65 -9.26 16 26 H 0.24 2.21 7.80 -4.41 -0.03 2.17 16 27 H 0.11 0.79 8.14 -2.39 -0.02 0.77 16 28 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 29 H 0.05 1.02 8.10 -2.39 -0.02 1.00 16 30 H 0.05 1.08 8.10 -2.39 -0.02 1.06 16 31 H 0.13 0.67 8.14 -2.39 -0.02 0.65 16 32 H 0.12 0.91 8.14 -2.39 -0.02 0.89 16 33 H 0.42 5.08 8.31 -92.71 -0.77 4.31 16 34 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 35 H 0.07 1.47 8.04 -2.39 -0.02 1.46 16 36 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 37 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 38 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 39 H 0.05 1.60 7.76 -2.39 -0.02 1.58 16 40 H 0.01 0.51 8.14 -2.39 -0.02 0.49 16 41 H 0.02 0.75 8.00 -2.39 -0.02 0.73 16 42 H 0.37 15.82 5.41 -92.71 -0.50 15.32 16 43 H 0.26 15.89 8.31 -92.71 -0.77 15.11 16 Total: -1.00 -79.06 356.99 3.33 -75.73 By element: Atomic # 1 Polarization: 25.51 SS G_CDS: -0.34 Total: 25.16 kcal Atomic # 6 Polarization: -17.73 SS G_CDS: 5.53 Total: -12.19 kcal Atomic # 7 Polarization: -112.43 SS G_CDS: -3.71 Total: -116.14 kcal Atomic # 8 Polarization: -19.04 SS G_CDS: -0.05 Total: -19.09 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 1.90 Total: 46.53 kcal Total: -79.06 3.33 -75.73 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732613717.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.743 kcal (2) G-P(sol) polarization free energy of solvation -79.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.731 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds