Wall clock time and date at job start Tue Mar 31 2020 00:49:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17393 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 C 1.52997 * 109.47168 * 10.26207 * 3 2 1 5 5 C 1.52996 * 109.47131 * 180.02562 * 4 3 2 6 6 C 1.50698 * 109.47188 * 180.02562 * 5 4 3 7 7 O 1.21282 * 120.00025 * 359.97438 * 6 5 4 8 8 N 1.34776 * 120.00035 * 180.02562 * 6 5 4 9 9 C 1.46507 * 120.00105 * 179.97438 * 8 6 5 10 10 H 1.09001 * 110.01329 * 326.38676 * 9 8 6 11 11 C 1.53868 * 110.03353 * 87.82958 * 9 8 6 12 12 C 1.54266 * 106.59855 * 119.28762 * 11 9 8 13 13 C 1.54891 * 104.19611 * 336.38454 * 12 11 9 14 14 C 1.54264 * 110.03157 * 204.99933 * 9 8 6 15 15 H 1.08997 * 110.48837 * 145.64280 * 14 9 8 16 16 C 1.53003 * 110.48700 * 23.13072 * 14 9 8 17 17 N 1.46503 * 109.46764 * 175.00295 * 16 14 9 18 18 C 1.36937 * 119.99554 * 180.02562 * 17 16 14 19 19 H 1.08003 * 120.00405 * 359.97438 * 18 17 16 20 20 C 1.38819 * 119.99899 * 179.97438 * 18 17 16 21 21 N 1.31620 * 119.99943 * 0.02562 * 20 18 17 22 22 Si 1.86797 * 120.00283 * 179.97438 * 20 18 17 23 23 H 1.48510 * 109.47065 * 0.02562 * 22 20 18 24 24 H 1.48497 * 109.47493 * 119.99664 * 22 20 18 25 25 H 1.48503 * 109.47413 * 240.00471 * 22 20 18 26 26 H 4.44645 * 5.63342 * 179.97438 * 4 1 2 27 27 H 1.09001 * 109.47046 * 130.25833 * 3 2 1 28 28 H 1.08996 * 109.47366 * 250.26237 * 3 2 1 29 29 H 1.09001 * 109.47289 * 300.00032 * 4 3 2 30 30 H 1.09004 * 109.47261 * 59.99776 * 4 3 2 31 31 H 1.09001 * 109.46997 * 299.99574 * 5 4 3 32 32 H 1.08996 * 109.47452 * 60.00000 * 5 4 3 33 33 H 0.97005 * 120.00406 * 359.97438 * 8 6 5 34 34 H 1.09002 * 110.03332 * 238.56854 * 11 9 8 35 35 H 1.09004 * 110.03349 * 359.97438 * 11 9 8 36 36 H 1.09004 * 110.48319 * 217.71312 * 12 11 9 37 37 H 1.08993 * 110.60275 * 95.12254 * 12 11 9 38 38 H 1.08995 * 110.76212 * 279.63199 * 13 12 11 39 39 H 1.08998 * 110.75251 * 156.25716 * 13 12 11 40 40 H 1.09000 * 109.47462 * 294.99945 * 16 14 9 41 41 H 1.08994 * 109.47215 * 55.00485 * 16 14 9 42 42 H 0.96998 * 120.00386 * 0.02562 * 17 16 14 43 43 H 0.96997 * 120.00093 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1566 -1.4185 -0.2570 5 6 4.6866 -1.4179 -0.2563 6 6 5.1896 -2.8157 -0.5101 7 8 4.4019 -3.7230 -0.6747 8 7 6.5147 -3.0575 -0.5530 9 6 7.0037 -4.4165 -0.7992 10 1 6.3239 -5.1437 -0.3553 11 6 7.1291 -4.6656 -2.3124 12 6 8.6150 -4.9766 -2.5862 13 6 9.3654 -4.3178 -1.4021 14 6 8.4179 -4.5847 -0.2062 15 1 8.5555 -5.5981 0.1708 16 6 8.6564 -3.5634 0.9078 17 7 9.9558 -3.8188 1.5344 18 6 10.3871 -3.0258 2.5641 19 1 9.7695 -2.2117 2.9140 20 6 11.6181 -3.2681 3.1582 21 7 12.3710 -4.2598 2.7314 22 14 12.2068 -2.1859 4.5623 23 1 11.1835 -1.1489 4.8506 24 1 12.4213 -3.0187 5.7729 25 1 13.4830 -1.5298 4.1802 26 1 -1.0498 -0.0004 0.0001 27 1 3.0090 0.6649 -0.7843 28 1 3.0092 0.3479 0.9672 29 1 2.7936 -2.0829 0.5272 30 1 2.7934 -1.7658 -1.2243 31 1 5.0500 -0.7536 -1.0404 32 1 5.0494 -1.0709 0.7111 33 1 7.1448 -2.3319 -0.4210 34 1 6.5102 -5.5144 -2.6036 35 1 6.8256 -3.7756 -2.8637 36 1 8.9296 -4.5334 -3.5311 37 1 8.7863 -6.0529 -2.5950 38 1 9.4856 -3.2473 -1.5684 39 1 10.3320 -4.7960 -1.2434 40 1 8.6474 -2.5579 0.4870 41 1 7.8688 -3.6512 1.6560 42 1 10.5107 -4.5496 1.2199 43 1 13.2313 -4.4289 3.1463 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001732613722.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:49:08 Heat of formation + Delta-G solvation = 1.723070 kcal Electronic energy + Delta-G solvation = -21260.239104 eV Core-core repulsion = 18113.102664 eV Total energy + Delta-G solvation = -3147.136440 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.09269 -38.09495 -35.73045 -34.41020 -33.42741 -32.40555 -31.44009 -28.78250 -28.51732 -26.98369 -24.54044 -22.75612 -22.33731 -20.45681 -20.28992 -19.19971 -18.45174 -17.31600 -16.88815 -16.07431 -15.79367 -14.98072 -14.85109 -14.61049 -14.41032 -14.03535 -13.71543 -13.55540 -13.12326 -12.87879 -12.78624 -12.66019 -12.24571 -11.73933 -11.52135 -11.24740 -11.15512 -10.90079 -10.87694 -10.79871 -10.48948 -10.42604 -10.36370 -10.32768 -10.29651 -9.98469 -9.73307 -9.70113 -8.90564 -8.89617 -6.95281 -5.79717 -3.08412 2.59132 2.63987 2.73542 3.31178 3.40952 3.46483 3.48780 4.15477 4.52002 4.64459 4.76074 4.79687 4.85167 4.91091 5.07855 5.27251 5.29394 5.40738 5.45673 5.47485 5.52438 5.63876 5.69767 5.79361 5.82923 5.85248 5.93287 5.93650 6.05308 6.09154 6.13412 6.21756 6.29655 6.48864 6.53025 6.69220 6.74634 6.81363 7.41723 7.63953 7.67001 8.33944 8.39102 9.50505 10.08282 10.42831 11.43156 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.014194 B = 0.003762 C = 0.003056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1972.249734 B = 7441.918856 C = 9160.845362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.182 4.182 3 C -0.016 4.016 4 C -0.098 4.098 5 C -0.144 4.144 6 C 0.511 3.489 7 O -0.548 6.548 8 N -0.719 5.719 9 C 0.147 3.853 10 H 0.087 0.913 11 C -0.130 4.130 12 C -0.126 4.126 13 C -0.112 4.112 14 C -0.107 4.107 15 H 0.086 0.914 16 C 0.165 3.835 17 N -0.730 5.730 18 C -0.240 4.240 19 H 0.070 0.930 20 C -0.014 4.014 21 N -0.932 5.932 22 Si 0.906 3.094 23 H -0.280 1.280 24 H -0.292 1.292 25 H -0.292 1.292 26 H 0.216 0.784 27 H 0.087 0.913 28 H 0.089 0.911 29 H 0.074 0.926 30 H 0.073 0.927 31 H 0.094 0.906 32 H 0.098 0.902 33 H 0.404 0.596 34 H 0.065 0.935 35 H 0.065 0.935 36 H 0.061 0.939 37 H 0.064 0.936 38 H 0.066 0.934 39 H 0.073 0.927 40 H 0.015 0.985 41 H 0.020 0.980 42 H 0.384 0.616 43 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.700 5.666 -10.329 19.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.182 4.182 3 C -0.052 4.052 4 C -0.136 4.136 5 C -0.184 4.184 6 C 0.298 3.702 7 O -0.426 6.426 8 N -0.371 5.371 9 C 0.042 3.958 10 H 0.105 0.895 11 C -0.169 4.169 12 C -0.163 4.163 13 C -0.150 4.150 14 C -0.127 4.127 15 H 0.105 0.895 16 C 0.037 3.963 17 N -0.374 5.374 18 C -0.371 4.371 19 H 0.088 0.912 20 C -0.210 4.210 21 N -0.581 5.581 22 Si 0.738 3.262 23 H -0.206 1.206 24 H -0.219 1.219 25 H -0.219 1.219 26 H 0.232 0.768 27 H 0.105 0.895 28 H 0.107 0.893 29 H 0.093 0.907 30 H 0.091 0.909 31 H 0.113 0.887 32 H 0.116 0.884 33 H 0.241 0.759 34 H 0.084 0.916 35 H 0.084 0.916 36 H 0.080 0.920 37 H 0.083 0.917 38 H 0.085 0.915 39 H 0.091 0.909 40 H 0.033 0.967 41 H 0.037 0.963 42 H 0.218 0.782 43 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -16.245 5.144 -10.315 19.919 hybrid contribution 0.740 0.676 0.797 1.280 sum -15.506 5.820 -9.518 19.102 Atomic orbital electron populations 1.24888 0.95999 1.00935 1.01487 1.23145 0.94617 1.00312 1.00139 1.18800 0.84785 0.98281 1.03353 1.21257 0.93114 0.95237 1.03953 1.21694 0.97217 0.94883 1.04575 1.20637 0.82432 0.90985 0.76147 1.90684 1.55456 1.46576 1.49895 1.46309 1.06914 1.11397 1.72516 1.21599 0.95611 0.83715 0.94872 0.89459 1.22559 0.96940 1.01652 0.95745 1.22388 0.94619 1.00711 0.98610 1.22503 0.98544 1.00778 0.93161 1.22478 0.92529 1.01491 0.96172 0.89519 1.20568 0.89443 0.94323 0.91940 1.42355 1.17069 1.37964 1.40037 1.19255 1.00489 1.08839 1.08503 0.91204 1.24745 0.97348 0.98765 1.00120 1.69666 1.12508 1.31667 1.44247 0.86128 0.78401 0.79638 0.82073 1.20565 1.21874 1.21870 0.76763 0.89461 0.89316 0.90727 0.90865 0.88738 0.88413 0.75855 0.91593 0.91639 0.91977 0.91676 0.91482 0.90851 0.96748 0.96268 0.78204 0.93544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -1.98 19.25 29.55 0.57 -1.41 16 2 C -0.18 -1.83 13.34 -37.12 -0.50 -2.32 16 3 C -0.02 -0.13 5.70 -29.52 -0.17 -0.29 16 4 C -0.10 -0.94 4.46 -26.73 -0.12 -1.06 16 5 C -0.14 -1.29 5.70 -27.89 -0.16 -1.45 16 6 C 0.51 6.61 7.83 -10.99 -0.09 6.52 16 7 O -0.55 -9.08 15.64 5.56 0.09 -8.99 16 8 N -0.72 -9.04 4.34 -52.72 -0.23 -9.27 16 9 C 0.15 2.03 3.12 -66.81 -0.21 1.82 16 10 H 0.09 1.33 7.56 -51.93 -0.39 0.94 16 11 C -0.13 -1.59 6.59 -25.62 -0.17 -1.76 16 12 C -0.13 -1.50 6.83 -25.07 -0.17 -1.67 16 13 C -0.11 -1.61 6.20 -24.73 -0.15 -1.77 16 14 C -0.11 -1.66 2.84 -88.96 -0.25 -1.92 16 15 H 0.09 1.42 8.14 -51.93 -0.42 1.00 16 16 C 0.17 3.11 4.74 -4.04 -0.02 3.10 16 17 N -0.73 -17.83 5.49 -59.90 -0.33 -18.16 16 18 C -0.24 -6.55 9.99 -15.06 -0.15 -6.70 16 19 H 0.07 1.85 7.83 -52.48 -0.41 1.44 16 20 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 21 N -0.93 -27.80 13.06 55.49 0.72 -27.08 16 22 Si 0.91 22.07 29.55 -169.99 -5.02 17.05 16 23 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 24 H -0.29 -7.18 7.11 56.52 0.40 -6.77 16 25 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 26 H 0.22 1.23 7.80 -54.10 -0.42 0.81 16 27 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.07 0.84 8.10 -51.93 -0.42 0.42 16 30 H 0.07 0.78 8.10 -51.93 -0.42 0.36 16 31 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.10 0.77 8.14 -51.93 -0.42 0.34 16 33 H 0.40 4.66 6.57 -40.82 -0.27 4.39 16 34 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.06 0.79 7.92 -51.93 -0.41 0.38 16 36 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 38 H 0.07 0.97 7.97 -51.93 -0.41 0.56 16 39 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 40 H 0.01 0.27 6.42 -51.93 -0.33 -0.07 16 41 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 42 H 0.38 9.92 7.64 -40.82 -0.31 9.61 16 43 H 0.25 7.34 8.31 -40.82 -0.34 7.00 16 LS Contribution 357.12 15.07 5.38 5.38 Total: -1.00 -32.54 357.12 -8.23 -40.77 By element: Atomic # 1 Polarization: 16.85 SS G_CDS: -7.17 Total: 9.68 kcal Atomic # 6 Polarization: -7.71 SS G_CDS: -1.68 Total: -9.39 kcal Atomic # 7 Polarization: -54.67 SS G_CDS: 0.17 Total: -54.51 kcal Atomic # 8 Polarization: -9.08 SS G_CDS: 0.09 Total: -8.99 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -32.54 -8.23 -40.77 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732613722.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.495 kcal (2) G-P(sol) polarization free energy of solvation -32.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.772 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds