Wall clock time and date at job start Tue Mar 31 2020 00:49:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17393 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 C 1.52997 * 109.47168 * 10.26207 * 3 2 1 5 5 C 1.52996 * 109.47131 * 180.02562 * 4 3 2 6 6 C 1.50698 * 109.47188 * 180.02562 * 5 4 3 7 7 O 1.21282 * 120.00025 * 359.97438 * 6 5 4 8 8 N 1.34776 * 120.00035 * 180.02562 * 6 5 4 9 9 C 1.46507 * 120.00105 * 179.97438 * 8 6 5 10 10 H 1.09001 * 110.01329 * 326.38676 * 9 8 6 11 11 C 1.53868 * 110.03353 * 87.82958 * 9 8 6 12 12 C 1.54266 * 106.59855 * 119.28762 * 11 9 8 13 13 C 1.54891 * 104.19611 * 336.38454 * 12 11 9 14 14 C 1.54264 * 110.03157 * 204.99933 * 9 8 6 15 15 H 1.08997 * 110.48837 * 145.64280 * 14 9 8 16 16 C 1.53003 * 110.48700 * 23.13072 * 14 9 8 17 17 N 1.46503 * 109.46764 * 175.00295 * 16 14 9 18 18 C 1.36937 * 119.99554 * 180.02562 * 17 16 14 19 19 H 1.08003 * 120.00405 * 359.97438 * 18 17 16 20 20 C 1.38819 * 119.99899 * 179.97438 * 18 17 16 21 21 N 1.31620 * 119.99943 * 0.02562 * 20 18 17 22 22 Si 1.86797 * 120.00283 * 179.97438 * 20 18 17 23 23 H 1.48510 * 109.47065 * 0.02562 * 22 20 18 24 24 H 1.48497 * 109.47493 * 119.99664 * 22 20 18 25 25 H 1.48503 * 109.47413 * 240.00471 * 22 20 18 26 26 H 4.44645 * 5.63342 * 179.97438 * 4 1 2 27 27 H 1.09001 * 109.47046 * 130.25833 * 3 2 1 28 28 H 1.08996 * 109.47366 * 250.26237 * 3 2 1 29 29 H 1.09001 * 109.47289 * 300.00032 * 4 3 2 30 30 H 1.09004 * 109.47261 * 59.99776 * 4 3 2 31 31 H 1.09001 * 109.46997 * 299.99574 * 5 4 3 32 32 H 1.08996 * 109.47452 * 60.00000 * 5 4 3 33 33 H 0.97005 * 120.00406 * 359.97438 * 8 6 5 34 34 H 1.09002 * 110.03332 * 238.56854 * 11 9 8 35 35 H 1.09004 * 110.03349 * 359.97438 * 11 9 8 36 36 H 1.09004 * 110.48319 * 217.71312 * 12 11 9 37 37 H 1.08993 * 110.60275 * 95.12254 * 12 11 9 38 38 H 1.08995 * 110.76212 * 279.63199 * 13 12 11 39 39 H 1.08998 * 110.75251 * 156.25716 * 13 12 11 40 40 H 1.09000 * 109.47462 * 294.99945 * 16 14 9 41 41 H 1.08994 * 109.47215 * 55.00485 * 16 14 9 42 42 H 0.96998 * 120.00386 * 0.02562 * 17 16 14 43 43 H 0.96997 * 120.00093 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1566 -1.4185 -0.2570 5 6 4.6866 -1.4179 -0.2563 6 6 5.1896 -2.8157 -0.5101 7 8 4.4019 -3.7230 -0.6747 8 7 6.5147 -3.0575 -0.5530 9 6 7.0037 -4.4165 -0.7992 10 1 6.3239 -5.1437 -0.3553 11 6 7.1291 -4.6656 -2.3124 12 6 8.6150 -4.9766 -2.5862 13 6 9.3654 -4.3178 -1.4021 14 6 8.4179 -4.5847 -0.2062 15 1 8.5555 -5.5981 0.1708 16 6 8.6564 -3.5634 0.9078 17 7 9.9558 -3.8188 1.5344 18 6 10.3871 -3.0258 2.5641 19 1 9.7695 -2.2117 2.9140 20 6 11.6181 -3.2681 3.1582 21 7 12.3710 -4.2598 2.7314 22 14 12.2068 -2.1859 4.5623 23 1 11.1835 -1.1489 4.8506 24 1 12.4213 -3.0187 5.7729 25 1 13.4830 -1.5298 4.1802 26 1 -1.0498 -0.0004 0.0001 27 1 3.0090 0.6649 -0.7843 28 1 3.0092 0.3479 0.9672 29 1 2.7936 -2.0829 0.5272 30 1 2.7934 -1.7658 -1.2243 31 1 5.0500 -0.7536 -1.0404 32 1 5.0494 -1.0709 0.7111 33 1 7.1448 -2.3319 -0.4210 34 1 6.5102 -5.5144 -2.6036 35 1 6.8256 -3.7756 -2.8637 36 1 8.9296 -4.5334 -3.5311 37 1 8.7863 -6.0529 -2.5950 38 1 9.4856 -3.2473 -1.5684 39 1 10.3320 -4.7960 -1.2434 40 1 8.6474 -2.5579 0.4870 41 1 7.8688 -3.6512 1.6560 42 1 10.5107 -4.5496 1.2199 43 1 13.2313 -4.4289 3.1463 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001732613722.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:49:07 Heat of formation + Delta-G solvation = -18.077484 kcal Electronic energy + Delta-G solvation = -21261.097721 eV Core-core repulsion = 18113.102664 eV Total energy + Delta-G solvation = -3147.995057 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.19044 -39.25049 -36.50052 -36.20206 -34.52038 -33.30223 -33.14604 -30.21199 -29.54908 -27.92004 -26.29350 -24.06021 -23.57856 -21.45255 -21.35558 -20.48157 -19.27908 -19.01841 -17.98975 -17.01227 -16.86576 -16.56607 -16.14490 -15.68029 -15.49396 -15.15192 -15.06602 -14.88201 -14.53158 -14.38508 -13.70297 -13.52156 -13.36020 -13.11245 -12.84573 -12.61978 -12.47710 -12.22374 -12.12047 -11.96220 -11.91187 -11.80044 -11.64181 -11.52998 -11.45757 -11.15310 -10.95547 -10.90598 -10.77863 -9.98918 -8.97588 -7.93476 -5.21818 1.49067 1.49817 1.59507 1.72669 1.86801 1.94265 2.33058 2.57342 3.39810 3.47407 3.54650 3.70316 3.83870 3.89665 4.11287 4.19148 4.21763 4.40412 4.49358 4.53751 4.57580 4.63353 4.69512 4.70958 4.75188 4.80543 4.83625 4.89596 5.03995 5.13525 5.22249 5.22382 5.25393 5.27980 5.34609 5.40009 5.48303 5.53373 5.64854 6.28766 6.63368 6.73709 7.33213 7.35551 8.11659 8.34351 9.30350 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.014194 B = 0.003762 C = 0.003056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1972.249734 B = 7441.918856 C = 9160.845362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.216 4.216 3 C -0.012 4.012 4 C -0.091 4.091 5 C -0.135 4.135 6 C 0.507 3.493 7 O -0.589 6.589 8 N -0.714 5.714 9 C 0.153 3.847 10 H 0.069 0.931 11 C -0.122 4.122 12 C -0.115 4.115 13 C -0.109 4.109 14 C -0.100 4.100 15 H 0.073 0.927 16 C 0.167 3.833 17 N -0.743 5.743 18 C -0.241 4.241 19 H 0.078 0.922 20 C -0.077 4.077 21 N -0.970 5.970 22 Si 0.971 3.029 23 H -0.264 1.264 24 H -0.297 1.297 25 H -0.293 1.293 26 H 0.240 0.760 27 H 0.108 0.892 28 H 0.102 0.898 29 H 0.050 0.950 30 H 0.057 0.943 31 H 0.126 0.874 32 H 0.116 0.884 33 H 0.412 0.588 34 H 0.068 0.932 35 H 0.073 0.927 36 H 0.080 0.920 37 H 0.069 0.931 38 H 0.068 0.932 39 H 0.054 0.946 40 H 0.034 0.966 41 H 0.011 0.989 42 H 0.374 0.626 43 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.416 7.578 -10.964 21.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.216 4.216 3 C -0.048 4.048 4 C -0.129 4.129 5 C -0.175 4.175 6 C 0.296 3.704 7 O -0.470 6.470 8 N -0.367 5.367 9 C 0.047 3.953 10 H 0.088 0.912 11 C -0.161 4.161 12 C -0.152 4.152 13 C -0.147 4.147 14 C -0.120 4.120 15 H 0.091 0.909 16 C 0.041 3.959 17 N -0.385 5.385 18 C -0.373 4.373 19 H 0.096 0.904 20 C -0.269 4.269 21 N -0.621 5.621 22 Si 0.801 3.199 23 H -0.188 1.188 24 H -0.225 1.225 25 H -0.221 1.221 26 H 0.257 0.743 27 H 0.126 0.874 28 H 0.120 0.880 29 H 0.069 0.931 30 H 0.076 0.924 31 H 0.144 0.856 32 H 0.134 0.866 33 H 0.250 0.750 34 H 0.087 0.913 35 H 0.091 0.909 36 H 0.099 0.901 37 H 0.088 0.912 38 H 0.087 0.913 39 H 0.073 0.927 40 H 0.052 0.948 41 H 0.028 0.972 42 H 0.206 0.794 43 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -16.993 7.093 -10.960 21.429 hybrid contribution 0.866 0.058 0.981 1.310 sum -16.126 7.151 -9.979 20.268 Atomic orbital electron populations 1.25698 0.97076 1.00097 1.00874 1.23826 0.95824 1.01133 1.00863 1.18852 0.83863 0.97320 1.04798 1.21145 0.93619 0.95937 1.02234 1.21732 0.96505 0.92633 1.06603 1.21346 0.81930 0.92179 0.74975 1.90670 1.56341 1.48234 1.51758 1.46270 1.07204 1.10973 1.72270 1.21439 0.93776 0.84232 0.95863 0.91240 1.22489 0.97212 1.02157 0.94250 1.22327 0.93747 1.00950 0.98211 1.22441 0.97601 1.00954 0.93676 1.22343 0.94240 0.99737 0.95657 0.90884 1.20697 0.86606 0.96200 0.92432 1.42568 1.18703 1.37337 1.39922 1.19673 1.00348 1.08698 1.08537 0.90411 1.25554 0.97933 1.00428 1.02975 1.69820 1.12780 1.33639 1.45843 0.85099 0.77933 0.78150 0.78737 1.18791 1.22478 1.22059 0.74350 0.87433 0.88010 0.93084 0.92383 0.85599 0.86628 0.75024 0.91275 0.90866 0.90114 0.91189 0.91287 0.92682 0.94827 0.97152 0.79436 0.94100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -3.78 19.25 74.32 1.43 -2.35 16 2 C -0.22 -4.11 13.34 31.13 0.42 -3.69 16 3 C -0.01 -0.17 5.70 28.79 0.16 -0.01 16 4 C -0.09 -1.66 4.46 30.59 0.14 -1.52 16 5 C -0.14 -2.12 5.70 29.85 0.17 -1.95 16 6 C 0.51 12.47 7.83 87.66 0.69 13.16 16 7 O -0.59 -19.47 15.64 -3.04 -0.05 -19.51 16 8 N -0.71 -16.87 4.34 -439.10 -1.91 -18.77 16 9 C 0.15 4.08 3.12 45.71 0.14 4.22 16 10 H 0.07 2.13 7.56 -2.39 -0.02 2.11 16 11 C -0.12 -2.78 6.59 31.32 0.21 -2.57 16 12 C -0.11 -2.51 6.83 31.67 0.22 -2.29 16 13 C -0.11 -3.03 6.20 31.89 0.20 -2.83 16 14 C -0.10 -3.07 2.84 -9.72 -0.03 -3.10 16 15 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 16 C 0.17 6.19 4.74 86.38 0.41 6.60 16 17 N -0.74 -36.31 5.49 -343.44 -1.89 -38.20 16 18 C -0.24 -13.03 9.99 84.04 0.84 -12.19 16 19 H 0.08 4.00 7.83 -2.91 -0.02 3.98 16 20 C -0.08 -4.33 5.50 84.86 0.47 -3.86 16 21 N -0.97 -58.63 13.06 21.65 0.28 -58.35 16 22 Si 0.97 45.25 29.55 68.60 2.03 47.28 16 23 H -0.26 -11.41 7.11 99.48 0.71 -10.70 16 24 H -0.30 -14.02 7.11 99.48 0.71 -13.31 16 25 H -0.29 -13.64 7.11 99.48 0.71 -12.94 16 26 H 0.24 2.35 7.80 -4.43 -0.03 2.31 16 27 H 0.11 1.07 8.14 -2.39 -0.02 1.06 16 28 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 29 H 0.05 1.15 8.10 -2.39 -0.02 1.13 16 30 H 0.06 1.22 8.10 -2.38 -0.02 1.20 16 31 H 0.13 1.23 8.14 -2.39 -0.02 1.21 16 32 H 0.12 1.46 8.14 -2.39 -0.02 1.44 16 33 H 0.41 8.52 6.57 -92.70 -0.61 7.91 16 34 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 35 H 0.07 1.57 7.92 -2.38 -0.02 1.55 16 36 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 37 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 38 H 0.07 1.88 7.97 -2.39 -0.02 1.87 16 39 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 40 H 0.03 1.14 6.42 -2.39 -0.02 1.13 16 41 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 42 H 0.37 19.65 7.64 -92.71 -0.71 18.94 16 43 H 0.25 14.67 8.31 -92.71 -0.77 13.90 16 Total: -1.00 -70.57 357.12 3.60 -66.97 By element: Atomic # 1 Polarization: 33.29 SS G_CDS: -0.33 Total: 32.96 kcal Atomic # 6 Polarization: -17.83 SS G_CDS: 5.45 Total: -12.37 kcal Atomic # 7 Polarization: -111.81 SS G_CDS: -3.51 Total: -115.32 kcal Atomic # 8 Polarization: -19.47 SS G_CDS: -0.05 Total: -19.51 kcal Atomic # 14 Polarization: 45.25 SS G_CDS: 2.03 Total: 47.28 kcal Total: -70.57 3.60 -66.97 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732613722.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.893 kcal (2) G-P(sol) polarization free energy of solvation -70.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.970 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds