Wall clock time and date at job start Tue Mar 31 2020 00:45:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50703 * 109.47159 * 2 1 4 4 C 1.32994 * 119.99874 * 122.75948 * 3 2 1 5 5 C 1.50700 * 119.99742 * 185.87730 * 4 3 2 6 6 C 1.47102 * 119.99959 * 5.88358 * 4 3 2 7 7 O 1.21610 * 120.00049 * 261.38258 * 6 4 3 8 8 N 1.34777 * 119.99860 * 81.38105 * 6 4 3 9 9 C 1.46772 * 125.34197 * 354.86242 * 8 6 4 10 10 C 1.53964 * 106.62870 * 198.56221 * 9 8 6 11 11 H 1.09000 * 113.01816 * 94.27784 * 10 9 8 12 12 C 1.53927 * 109.25214 * 221.80946 * 10 9 8 13 13 N 1.46747 * 106.72026 * 81.63374 * 12 10 9 14 14 C 1.36944 * 125.32902 * 198.31936 * 13 12 10 15 15 H 1.08001 * 120.00100 * 180.02562 * 14 13 12 16 16 C 1.38816 * 119.99888 * 0.02862 * 14 13 12 17 17 N 1.31623 * 119.99858 * 359.97438 * 16 14 13 18 18 Si 1.86799 * 119.99859 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.47096 * 59.99336 * 18 16 14 20 20 H 1.48501 * 109.46769 * 179.97438 * 18 16 14 21 21 H 1.48499 * 109.46738 * 299.99281 * 18 16 14 22 22 C 1.46635 * 109.34226 * 18.33971 * 13 12 10 23 23 C 1.53688 * 108.00875 * 359.16498 * 22 13 12 24 24 H 1.09000 * 113.05346 * 106.19471 * 23 22 13 25 25 C 1.46676 * 125.33733 * 174.91104 * 8 6 4 26 26 H 1.09003 * 109.47300 * 59.99705 * 1 2 3 27 27 H 1.09007 * 109.46942 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.46916 * 299.99675 * 1 2 3 29 29 H 1.09001 * 109.46916 * 240.00325 * 2 1 3 30 30 H 1.09003 * 109.47300 * 120.00295 * 2 1 3 31 31 H 1.07994 * 119.99660 * 302.76592 * 3 2 1 32 32 H 1.08998 * 109.47214 * 265.06131 * 5 4 3 33 33 H 1.08995 * 109.47012 * 25.06281 * 5 4 3 34 34 H 1.09006 * 109.46814 * 145.06164 * 5 4 3 35 35 H 1.09000 * 110.03024 * 79.26780 * 9 8 6 36 36 H 1.08998 * 110.02582 * 317.85126 * 9 8 6 37 37 H 1.08999 * 110.01064 * 200.94853 * 12 10 9 38 38 H 1.08996 * 110.01124 * 322.31464 * 12 10 9 39 39 H 0.97004 * 119.99715 * 180.02562 * 17 16 14 40 40 H 1.08998 * 109.76098 * 239.52466 * 22 13 12 41 41 H 1.08996 * 109.76070 * 118.81005 * 22 13 12 42 42 H 1.09001 * 109.76803 * 59.79029 * 25 8 6 43 43 H 1.09000 * 109.77144 * 299.03695 * 25 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.8416 1.8400 0.9686 5 6 3.2377 3.2921 1.0438 6 6 3.3501 0.8862 1.9664 7 8 2.8148 0.8020 3.0551 8 7 4.4091 0.1056 1.6740 9 6 5.0753 0.0327 0.3681 10 6 5.8819 -1.2787 0.3577 11 1 5.3381 -2.1100 -0.0910 12 6 7.2572 -1.0235 -0.2848 13 7 8.1100 -0.4441 0.7594 14 6 9.2708 0.2485 0.5399 15 1 9.8331 0.6387 1.3754 16 6 9.7248 0.4491 -0.7565 17 7 9.0398 -0.0268 -1.7747 18 14 11.3086 1.3932 -1.0559 19 1 12.4350 0.6956 -0.3851 20 1 11.5719 1.4679 -2.5154 21 1 11.1781 2.7660 -0.5051 22 6 7.5249 -0.7231 2.0747 23 6 6.2194 -1.5046 1.8578 24 1 6.3058 -2.5600 2.1160 25 6 5.0762 -0.8050 2.6106 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 1.7351 2.0986 -0.7865 32 1 4.1930 3.4347 0.5386 33 1 2.4756 3.9021 0.5589 34 1 3.3311 3.5896 2.0883 35 1 5.7446 0.8837 0.2424 36 1 4.3326 0.0204 -0.4295 37 1 7.6844 -1.9625 -0.6368 38 1 7.1570 -0.3245 -1.1151 39 1 9.3572 0.1131 -2.6806 40 1 7.3124 0.2137 2.5897 41 1 8.2179 -1.3204 2.6671 42 1 4.3648 -1.5471 2.9730 43 1 5.4795 -0.2395 3.4506 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733572746.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:45:39 Heat of formation + Delta-G solvation = 1.261821 kcal Electronic energy + Delta-G solvation = -22721.420758 eV Core-core repulsion = 19574.264317 eV Total energy + Delta-G solvation = -3147.156441 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.31117 -38.39904 -35.70844 -34.90458 -32.42772 -32.06006 -30.07781 -29.71326 -27.05118 -25.71233 -25.46550 -23.75112 -22.38675 -21.17099 -20.09438 -19.36786 -18.10192 -16.99597 -16.43167 -15.79152 -15.41018 -15.00996 -14.72295 -14.21464 -13.77141 -13.48536 -13.40219 -13.15602 -12.92009 -12.81077 -12.56330 -12.28862 -12.11582 -12.02542 -11.83174 -11.50648 -11.47092 -11.12117 -11.04313 -10.97432 -10.83021 -10.38878 -10.19386 -10.02850 -9.89712 -9.69682 -9.61300 -8.89273 -8.66317 -8.32700 -6.87898 -5.73304 -3.11638 1.79696 2.77473 3.35344 3.37771 3.42541 3.43294 4.44845 4.56474 4.74110 4.93123 4.97329 5.08045 5.22373 5.24441 5.38957 5.39101 5.45592 5.53344 5.62897 5.66310 5.67962 5.76713 5.78682 5.87897 5.88931 5.93110 6.02527 6.09237 6.19090 6.26537 6.35237 6.37681 6.56229 6.61139 6.65835 6.69976 6.82355 7.40519 7.57876 7.75142 7.77905 8.27165 8.33277 9.18086 9.78312 10.41558 11.33364 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.021612 B = 0.004882 C = 0.004659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1295.291958 B = 5734.207097 C = 6008.784312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.104 4.104 3 C -0.121 4.121 4 C -0.153 4.153 5 C -0.105 4.105 6 C 0.571 3.429 7 O -0.551 6.551 8 N -0.603 5.603 9 C 0.114 3.886 10 C -0.122 4.122 11 H 0.087 0.913 12 C 0.172 3.828 13 N -0.601 5.601 14 C -0.225 4.225 15 H 0.077 0.923 16 C -0.008 4.008 17 N -0.923 5.923 18 Si 0.914 3.086 19 H -0.285 1.285 20 H -0.290 1.290 21 H -0.285 1.285 22 C 0.143 3.857 23 C -0.109 4.109 24 H 0.095 0.905 25 C 0.119 3.881 26 H 0.056 0.944 27 H 0.056 0.944 28 H 0.055 0.945 29 H 0.076 0.924 30 H 0.067 0.933 31 H 0.124 0.876 32 H 0.075 0.925 33 H 0.070 0.930 34 H 0.067 0.933 35 H 0.080 0.920 36 H 0.066 0.934 37 H 0.020 0.980 38 H 0.097 0.903 39 H 0.253 0.747 40 H 0.025 0.975 41 H 0.023 0.977 42 H 0.061 0.939 43 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.232 0.193 1.699 13.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.141 4.141 3 C -0.139 4.139 4 C -0.156 4.156 5 C -0.162 4.162 6 C 0.360 3.640 7 O -0.430 6.430 8 N -0.335 5.335 9 C -0.009 4.009 10 C -0.143 4.143 11 H 0.105 0.895 12 C 0.047 3.953 13 N -0.327 5.327 14 C -0.353 4.353 15 H 0.095 0.905 16 C -0.203 4.203 17 N -0.572 5.572 18 Si 0.744 3.256 19 H -0.212 1.212 20 H -0.215 1.215 21 H -0.212 1.212 22 C 0.017 3.983 23 C -0.128 4.128 24 H 0.113 0.887 25 C -0.004 4.004 26 H 0.075 0.925 27 H 0.075 0.925 28 H 0.075 0.925 29 H 0.095 0.905 30 H 0.085 0.915 31 H 0.142 0.858 32 H 0.093 0.907 33 H 0.089 0.911 34 H 0.086 0.914 35 H 0.098 0.902 36 H 0.084 0.916 37 H 0.038 0.962 38 H 0.115 0.885 39 H 0.064 0.936 40 H 0.043 0.957 41 H 0.041 0.959 42 H 0.080 0.920 43 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -13.426 0.269 2.122 13.595 hybrid contribution 0.955 0.418 -0.213 1.064 sum -12.471 0.687 1.909 12.635 Atomic orbital electron populations 1.21658 0.94635 1.01753 1.01959 1.20741 0.96503 0.94087 1.02817 1.23276 0.96827 0.97653 0.96179 1.21480 1.01108 0.96504 0.96536 1.20675 1.02146 0.90374 1.03003 1.18068 0.78837 0.79916 0.87134 1.90777 1.58206 1.69563 1.24482 1.48347 1.30185 1.41370 1.13645 1.22151 0.95431 0.99654 0.83630 1.23255 0.99511 0.95738 0.95747 0.89517 1.21381 0.83554 0.98170 0.92238 1.44212 1.25024 1.63928 0.99532 1.19021 0.97471 1.26489 0.92367 0.90509 1.24765 0.99176 1.00982 0.95423 1.69845 1.39135 1.50167 0.98025 0.86168 0.82875 0.79662 0.76894 1.21199 1.21546 1.21161 1.21199 0.91435 0.95809 0.89845 1.22774 0.94843 0.99503 0.95697 0.88703 1.21805 0.93928 0.92253 0.92402 0.92539 0.92478 0.92542 0.90533 0.91477 0.85772 0.90677 0.91139 0.91365 0.90178 0.91582 0.96224 0.88502 0.93634 0.95749 0.95911 0.92047 0.91455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.38 9.89 37.16 0.37 -1.02 16 2 C -0.10 -1.20 5.95 -27.88 -0.17 -1.37 16 3 C -0.12 -1.43 8.56 -36.12 -0.31 -1.74 16 4 C -0.15 -2.16 4.87 -102.85 -0.50 -2.66 16 5 C -0.10 -1.28 10.04 36.01 0.36 -0.91 16 6 C 0.57 9.74 5.26 -12.66 -0.07 9.67 16 7 O -0.55 -11.04 17.42 5.27 0.09 -10.95 16 8 N -0.60 -10.03 3.31 -173.68 -0.58 -10.60 16 9 C 0.11 1.90 5.81 -3.39 -0.02 1.88 16 10 C -0.12 -2.13 4.17 -88.35 -0.37 -2.50 16 11 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16 12 C 0.17 3.88 4.81 -3.42 -0.02 3.86 16 13 N -0.60 -14.68 3.37 -171.94 -0.58 -15.26 16 14 C -0.23 -6.08 10.25 -15.05 -0.15 -6.23 16 15 H 0.08 2.02 7.83 -52.49 -0.41 1.61 16 16 C -0.01 -0.21 5.48 -17.43 -0.10 -0.31 16 17 N -0.92 -25.78 10.16 55.49 0.56 -25.22 16 18 Si 0.91 21.52 29.55 -169.99 -5.02 16.49 16 19 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 20 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 21 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 22 C 0.14 2.90 6.60 -3.61 -0.02 2.88 16 23 C -0.11 -1.81 4.02 -88.61 -0.36 -2.17 16 24 H 0.09 1.41 8.14 -51.93 -0.42 0.98 16 25 C 0.12 1.91 6.24 -3.57 -0.02 1.89 16 26 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 27 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 29 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.07 0.93 6.32 -51.93 -0.33 0.60 16 31 H 0.12 1.20 8.05 -52.49 -0.42 0.77 16 32 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 33 H 0.07 0.69 8.03 -51.93 -0.42 0.27 16 34 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.08 1.56 7.71 -51.93 -0.40 1.16 16 36 H 0.07 0.99 7.11 -51.93 -0.37 0.62 16 37 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 38 H 0.10 2.44 6.00 -51.93 -0.31 2.13 16 39 H 0.25 6.91 8.31 -40.82 -0.34 6.57 16 40 H 0.02 0.51 7.29 -51.93 -0.38 0.13 16 41 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 43 H 0.07 1.11 7.44 -51.93 -0.39 0.73 16 LS Contribution 340.73 15.07 5.13 5.13 Total: -1.00 -30.44 340.73 -8.97 -39.41 By element: Atomic # 1 Polarization: 6.93 SS G_CDS: -7.21 Total: -0.28 kcal Atomic # 6 Polarization: 2.64 SS G_CDS: -1.37 Total: 1.27 kcal Atomic # 7 Polarization: -50.49 SS G_CDS: -0.59 Total: -51.08 kcal Atomic # 8 Polarization: -11.04 SS G_CDS: 0.09 Total: -10.95 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -30.44 -8.97 -39.41 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733572746.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.673 kcal (2) G-P(sol) polarization free energy of solvation -30.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.411 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds