Wall clock time and date at job start Tue Mar 31 2020 00:45:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50703 * 109.47159 * 2 1 4 4 C 1.32994 * 119.99874 * 122.75948 * 3 2 1 5 5 C 1.50700 * 119.99742 * 185.87730 * 4 3 2 6 6 C 1.47102 * 119.99959 * 5.88358 * 4 3 2 7 7 O 1.21610 * 120.00049 * 261.38258 * 6 4 3 8 8 N 1.34777 * 119.99860 * 81.38105 * 6 4 3 9 9 C 1.46772 * 125.34197 * 354.86242 * 8 6 4 10 10 C 1.53964 * 106.62870 * 198.56221 * 9 8 6 11 11 H 1.09000 * 113.01816 * 94.27784 * 10 9 8 12 12 C 1.53927 * 109.25214 * 221.80946 * 10 9 8 13 13 N 1.46747 * 106.72026 * 81.63374 * 12 10 9 14 14 C 1.36944 * 125.32902 * 198.31936 * 13 12 10 15 15 H 1.08001 * 120.00100 * 180.02562 * 14 13 12 16 16 C 1.38816 * 119.99888 * 0.02862 * 14 13 12 17 17 N 1.31623 * 119.99858 * 359.97438 * 16 14 13 18 18 Si 1.86799 * 119.99859 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.47096 * 59.99336 * 18 16 14 20 20 H 1.48501 * 109.46769 * 179.97438 * 18 16 14 21 21 H 1.48499 * 109.46738 * 299.99281 * 18 16 14 22 22 C 1.46635 * 109.34226 * 18.33971 * 13 12 10 23 23 C 1.53688 * 108.00875 * 359.16498 * 22 13 12 24 24 H 1.09000 * 113.05346 * 106.19471 * 23 22 13 25 25 C 1.46676 * 125.33733 * 174.91104 * 8 6 4 26 26 H 1.09003 * 109.47300 * 59.99705 * 1 2 3 27 27 H 1.09007 * 109.46942 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.46916 * 299.99675 * 1 2 3 29 29 H 1.09001 * 109.46916 * 240.00325 * 2 1 3 30 30 H 1.09003 * 109.47300 * 120.00295 * 2 1 3 31 31 H 1.07994 * 119.99660 * 302.76592 * 3 2 1 32 32 H 1.08998 * 109.47214 * 265.06131 * 5 4 3 33 33 H 1.08995 * 109.47012 * 25.06281 * 5 4 3 34 34 H 1.09006 * 109.46814 * 145.06164 * 5 4 3 35 35 H 1.09000 * 110.03024 * 79.26780 * 9 8 6 36 36 H 1.08998 * 110.02582 * 317.85126 * 9 8 6 37 37 H 1.08999 * 110.01064 * 200.94853 * 12 10 9 38 38 H 1.08996 * 110.01124 * 322.31464 * 12 10 9 39 39 H 0.97004 * 119.99715 * 180.02562 * 17 16 14 40 40 H 1.08998 * 109.76098 * 239.52466 * 22 13 12 41 41 H 1.08996 * 109.76070 * 118.81005 * 22 13 12 42 42 H 1.09001 * 109.76803 * 59.79029 * 25 8 6 43 43 H 1.09000 * 109.77144 * 299.03695 * 25 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.8416 1.8400 0.9686 5 6 3.2377 3.2921 1.0438 6 6 3.3501 0.8862 1.9664 7 8 2.8148 0.8020 3.0551 8 7 4.4091 0.1056 1.6740 9 6 5.0753 0.0327 0.3681 10 6 5.8819 -1.2787 0.3577 11 1 5.3381 -2.1100 -0.0910 12 6 7.2572 -1.0235 -0.2848 13 7 8.1100 -0.4441 0.7594 14 6 9.2708 0.2485 0.5399 15 1 9.8331 0.6387 1.3754 16 6 9.7248 0.4491 -0.7565 17 7 9.0398 -0.0268 -1.7747 18 14 11.3086 1.3932 -1.0559 19 1 12.4350 0.6956 -0.3851 20 1 11.5719 1.4679 -2.5154 21 1 11.1781 2.7660 -0.5051 22 6 7.5249 -0.7231 2.0747 23 6 6.2194 -1.5046 1.8578 24 1 6.3058 -2.5600 2.1160 25 6 5.0762 -0.8050 2.6106 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 1.7351 2.0986 -0.7865 32 1 4.1930 3.4347 0.5386 33 1 2.4756 3.9021 0.5589 34 1 3.3311 3.5896 2.0883 35 1 5.7446 0.8837 0.2424 36 1 4.3326 0.0204 -0.4295 37 1 7.6844 -1.9625 -0.6368 38 1 7.1570 -0.3245 -1.1151 39 1 9.3572 0.1131 -2.6806 40 1 7.3124 0.2137 2.5897 41 1 8.2179 -1.3204 2.6671 42 1 4.3648 -1.5471 2.9730 43 1 5.4795 -0.2395 3.4506 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733572746.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:45:38 Heat of formation + Delta-G solvation = -16.087132 kcal Electronic energy + Delta-G solvation = -22722.173065 eV Core-core repulsion = 19574.264317 eV Total energy + Delta-G solvation = -3147.908748 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.68378 -39.84317 -36.76890 -36.57217 -34.07526 -33.14354 -31.60466 -31.40694 -27.99211 -27.40879 -27.03990 -25.25665 -23.40770 -22.43271 -21.76939 -20.85424 -19.42190 -18.78685 -17.81376 -17.10665 -16.70202 -16.65650 -16.16525 -15.53490 -15.38589 -14.76783 -14.54508 -14.48935 -14.15612 -13.87253 -13.82943 -13.60358 -13.56561 -13.28798 -13.20375 -13.09160 -12.91579 -12.71939 -12.67650 -12.04601 -12.00163 -11.90050 -11.88837 -11.74845 -11.54312 -11.40873 -10.98466 -10.67856 -9.89956 -9.69308 -8.85947 -7.79191 -5.19387 0.79420 1.47468 1.48542 1.50186 1.56688 2.08788 2.50753 3.28064 3.33765 3.55721 3.66238 3.77783 3.87394 3.96065 4.11981 4.25357 4.27304 4.40645 4.44908 4.48077 4.54400 4.58663 4.71443 4.72231 4.78181 4.82980 4.89813 4.97414 5.01771 5.06224 5.15403 5.16679 5.19735 5.29255 5.32959 5.46267 5.48596 5.61421 5.63727 5.83231 6.30179 6.43640 7.01724 7.14554 7.81012 8.42163 9.25044 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.021612 B = 0.004882 C = 0.004659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1295.291958 B = 5734.207097 C = 6008.784312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.109 4.109 3 C -0.097 4.097 4 C -0.188 4.188 5 C -0.100 4.100 6 C 0.571 3.429 7 O -0.587 6.587 8 N -0.604 5.604 9 C 0.127 3.873 10 C -0.110 4.110 11 H 0.119 0.881 12 C 0.180 3.820 13 N -0.620 5.620 14 C -0.244 4.244 15 H 0.075 0.925 16 C -0.056 4.056 17 N -0.944 5.944 18 Si 0.974 3.026 19 H -0.281 1.281 20 H -0.291 1.291 21 H -0.280 1.280 22 C 0.140 3.860 23 C -0.094 4.094 24 H 0.123 0.877 25 C 0.120 3.880 26 H 0.075 0.925 27 H 0.064 0.936 28 H 0.045 0.955 29 H 0.091 0.909 30 H 0.041 0.959 31 H 0.155 0.845 32 H 0.068 0.932 33 H 0.098 0.902 34 H 0.054 0.946 35 H 0.047 0.953 36 H 0.088 0.912 37 H -0.006 1.006 38 H 0.068 0.932 39 H 0.249 0.751 40 H 0.015 0.985 41 H 0.026 0.974 42 H 0.079 0.921 43 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.623 -0.004 1.098 14.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.146 4.146 3 C -0.115 4.115 4 C -0.191 4.191 5 C -0.157 4.157 6 C 0.362 3.638 7 O -0.469 6.469 8 N -0.335 5.335 9 C 0.005 3.995 10 C -0.130 4.130 11 H 0.137 0.863 12 C 0.054 3.946 13 N -0.346 5.346 14 C -0.373 4.373 15 H 0.093 0.907 16 C -0.249 4.249 17 N -0.593 5.593 18 Si 0.803 3.197 19 H -0.207 1.207 20 H -0.217 1.217 21 H -0.206 1.206 22 C 0.014 3.986 23 C -0.113 4.113 24 H 0.141 0.859 25 C -0.003 4.003 26 H 0.094 0.906 27 H 0.084 0.916 28 H 0.064 0.936 29 H 0.110 0.890 30 H 0.060 0.940 31 H 0.173 0.827 32 H 0.086 0.914 33 H 0.117 0.883 34 H 0.073 0.927 35 H 0.066 0.934 36 H 0.106 0.894 37 H 0.012 0.988 38 H 0.086 0.914 39 H 0.058 0.942 40 H 0.033 0.967 41 H 0.044 0.956 42 H 0.097 0.903 43 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -14.819 0.065 1.539 14.899 hybrid contribution 1.382 0.458 -0.011 1.456 sum -13.437 0.523 1.528 13.534 Atomic orbital electron populations 1.21634 0.93075 1.02524 1.02371 1.20821 0.97844 0.93696 1.02226 1.23651 0.94263 0.98234 0.95356 1.21528 1.03469 0.96747 0.97366 1.20663 1.02771 0.89804 1.02444 1.18594 0.78267 0.79742 0.87210 1.90744 1.59316 1.70601 1.26230 1.48399 1.30080 1.41484 1.13561 1.21907 0.95281 0.97952 0.84405 1.23149 0.96911 0.97104 0.95817 0.86341 1.21121 0.85919 0.95825 0.91688 1.44472 1.24850 1.63749 1.01574 1.19332 0.98592 1.26809 0.92578 0.90722 1.25499 1.02077 1.02088 0.95269 1.70061 1.40232 1.51054 0.97947 0.85221 0.79521 0.78544 0.76432 1.20731 1.21681 1.20619 1.21333 0.93178 0.95961 0.88095 1.22740 0.92904 1.00549 0.95142 0.85865 1.21811 0.93984 0.92457 0.92039 0.90585 0.91649 0.93620 0.89045 0.94015 0.82738 0.91352 0.88345 0.92689 0.93423 0.89417 0.98832 0.91425 0.94170 0.96692 0.95618 0.90277 0.92260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.30 9.89 71.98 0.71 -1.59 16 2 C -0.11 -2.22 5.95 29.85 0.18 -2.04 16 3 C -0.10 -2.03 8.56 24.52 0.21 -1.82 16 4 C -0.19 -5.06 4.87 -18.70 -0.09 -5.15 16 5 C -0.10 -2.33 10.04 71.24 0.72 -1.61 16 6 C 0.57 19.16 5.26 86.57 0.46 19.62 16 7 O -0.59 -23.53 17.42 -4.06 -0.07 -23.60 16 8 N -0.60 -19.55 3.31 -821.67 -2.72 -22.27 16 9 C 0.13 4.14 5.81 86.65 0.50 4.64 16 10 C -0.11 -3.67 4.17 -9.33 -0.04 -3.71 16 11 H 0.12 3.28 8.14 -2.39 -0.02 3.26 16 12 C 0.18 8.21 4.81 86.65 0.42 8.63 16 13 N -0.62 -30.79 3.37 -697.90 -2.35 -33.15 16 14 C -0.24 -13.42 10.25 84.03 0.86 -12.56 16 15 H 0.07 4.01 7.83 -2.91 -0.02 3.98 16 16 C -0.06 -3.08 5.48 84.86 0.47 -2.61 16 17 N -0.94 -53.75 10.16 21.65 0.22 -53.53 16 18 Si 0.97 44.62 29.55 68.60 2.03 46.65 16 19 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 20 H -0.29 -13.28 7.11 99.48 0.71 -12.58 16 21 H -0.28 -12.49 7.11 99.48 0.71 -11.79 16 22 C 0.14 5.65 6.60 86.59 0.57 6.22 16 23 C -0.09 -2.99 4.02 -9.49 -0.04 -3.03 16 24 H 0.12 3.27 8.14 -2.39 -0.02 3.25 16 25 C 0.12 3.69 6.24 86.59 0.54 4.23 16 26 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 27 H 0.06 0.98 8.14 -2.38 -0.02 0.96 16 28 H 0.04 0.85 8.14 -2.39 -0.02 0.83 16 29 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 30 H 0.04 1.08 6.32 -2.39 -0.02 1.06 16 31 H 0.16 2.33 8.05 -2.91 -0.02 2.30 16 32 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 33 H 0.10 1.68 8.03 -2.39 -0.02 1.67 16 34 H 0.05 1.39 8.14 -2.38 -0.02 1.37 16 35 H 0.05 1.88 7.71 -2.39 -0.02 1.87 16 36 H 0.09 2.46 7.11 -2.39 -0.02 2.45 16 37 H -0.01 -0.32 8.14 -2.39 -0.02 -0.34 16 38 H 0.07 3.50 6.00 -2.39 -0.01 3.48 16 39 H 0.25 13.81 8.31 -92.71 -0.77 13.04 16 40 H 0.02 0.64 7.29 -2.39 -0.02 0.62 16 41 H 0.03 1.03 8.14 -2.39 -0.02 1.01 16 42 H 0.08 2.20 8.14 -2.39 -0.02 2.19 16 43 H 0.06 1.93 7.44 -2.39 -0.02 1.92 16 Total: -1.00 -67.36 340.73 3.53 -63.83 By element: Atomic # 1 Polarization: 11.89 SS G_CDS: 0.97 Total: 12.86 kcal Atomic # 6 Polarization: 3.75 SS G_CDS: 5.46 Total: 9.21 kcal Atomic # 7 Polarization: -104.09 SS G_CDS: -4.85 Total: -108.95 kcal Atomic # 8 Polarization: -23.53 SS G_CDS: -0.07 Total: -23.60 kcal Atomic # 14 Polarization: 44.62 SS G_CDS: 2.03 Total: 46.65 kcal Total: -67.36 3.53 -63.83 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733572746.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.744 kcal (2) G-P(sol) polarization free energy of solvation -67.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.831 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds