Wall clock time and date at job start Tue Mar 31 2020 00:44:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17401 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 C 1.52996 * 109.46833 * 224.97665 * 3 2 1 5 5 C 1.52998 * 109.46929 * 180.02562 * 4 3 2 6 6 C 1.50706 * 109.47348 * 179.97438 * 5 4 3 7 7 O 1.21283 * 119.99503 * 359.97438 * 6 5 4 8 8 N 1.34773 * 120.00081 * 179.72561 * 6 5 4 9 9 C 1.47014 * 125.65113 * 0.02562 * 8 6 5 10 10 C 1.54321 * 107.27611 * 178.90705 * 9 8 6 11 11 C 1.55160 * 102.93967 * 337.80925 * 10 9 8 12 12 H 1.09003 * 111.00608 * 277.38983 * 11 10 9 13 13 C 1.52994 * 111.00411 * 153.57667 * 11 10 9 14 14 C 1.52990 * 109.47669 * 66.45281 * 13 11 10 15 15 N 1.46504 * 109.47747 * 180.02562 * 14 13 11 16 16 C 1.36931 * 120.00038 * 180.02562 * 15 14 13 17 17 H 1.08002 * 120.00628 * 359.97438 * 16 15 14 18 18 C 1.38814 * 119.99837 * 180.02562 * 16 15 14 19 19 N 1.31627 * 119.99918 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 120.00151 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.47150 * 359.97438 * 20 18 16 22 22 H 1.48505 * 109.47276 * 119.99153 * 20 18 16 23 23 H 1.48494 * 109.47104 * 239.99458 * 20 18 16 24 24 C 1.47422 * 125.64458 * 179.72077 * 8 6 5 25 25 H 4.44644 * 5.63484 * 179.97438 * 4 1 2 26 26 H 1.09000 * 109.46782 * 104.97659 * 3 2 1 27 27 H 1.08994 * 109.47314 * 344.97744 * 3 2 1 28 28 H 1.09000 * 109.47441 * 60.00398 * 4 3 2 29 29 H 1.09002 * 109.47087 * 299.99844 * 4 3 2 30 30 H 1.09001 * 109.47671 * 60.00109 * 5 4 3 31 31 H 1.08998 * 109.47454 * 300.00107 * 5 4 3 32 32 H 1.09005 * 109.88517 * 298.32848 * 9 8 6 33 33 H 1.09004 * 109.88554 * 59.33285 * 9 8 6 34 34 H 1.09001 * 110.71957 * 96.16695 * 10 9 8 35 35 H 1.08997 * 110.72421 * 219.44856 * 10 9 8 36 36 H 1.09007 * 109.47364 * 186.45292 * 13 11 10 37 37 H 1.09005 * 109.47087 * 306.45003 * 13 11 10 38 38 H 1.09005 * 109.47338 * 299.99939 * 14 13 11 39 39 H 1.09005 * 109.47093 * 59.99725 * 14 13 11 40 40 H 0.96997 * 119.99571 * 0.02562 * 15 14 13 41 41 H 0.97001 * 119.99828 * 180.02562 * 19 18 16 42 42 H 1.08996 * 110.36888 * 322.99350 * 24 8 6 43 43 H 1.08997 * 110.37049 * 85.32370 * 24 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1555 1.0213 1.0196 5 6 4.6855 1.0225 1.0191 6 6 5.1874 2.0282 2.0230 7 8 4.3989 2.6802 2.6742 8 7 6.5124 2.1995 2.2006 9 6 7.5734 1.4759 1.4851 10 6 8.9241 2.0208 1.9953 11 6 8.5455 3.4165 2.5577 12 1 8.5008 4.1595 1.7614 13 6 9.5216 3.8493 3.6534 14 6 10.9060 4.0760 3.0430 15 7 11.8408 4.4899 4.0923 16 6 13.1481 4.7516 3.7803 17 1 13.4904 4.6526 2.7607 18 6 14.0340 5.1433 4.7747 19 7 13.6171 5.2635 6.0174 20 14 15.8176 5.4998 4.3493 21 1 16.0306 5.2917 2.8945 22 1 16.1388 6.9064 4.7008 23 1 16.7015 4.5841 5.1145 24 6 7.1377 3.1482 3.1399 25 1 -1.0502 0.0000 -0.0003 26 1 3.0092 0.2664 -0.9928 27 1 3.0098 -0.9916 0.2664 28 1 2.7923 0.7556 2.0123 29 1 2.7917 2.0137 0.7532 30 1 5.0484 1.2885 0.0264 31 1 5.0497 0.0302 1.2852 32 1 7.5010 0.4087 1.6952 33 1 7.4824 1.6493 0.4128 34 1 9.3242 1.3830 2.7836 35 1 9.6362 2.1155 1.1756 36 1 9.1694 4.7750 4.1089 37 1 9.5828 3.0707 4.4138 38 1 11.2583 3.1504 2.5876 39 1 10.8448 4.8546 2.2826 40 1 11.5336 4.5784 5.0081 41 1 14.2360 5.5376 6.7122 42 1 6.5626 4.0730 3.1842 43 1 7.2184 2.7027 4.1314 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733644764.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:44:44 Heat of formation + Delta-G solvation = 6.735172 kcal Electronic energy + Delta-G solvation = -20466.768300 eV Core-core repulsion = 17319.849200 eV Total energy + Delta-G solvation = -3146.919099 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.27053 -38.05384 -35.88646 -35.15483 -33.11417 -32.51300 -30.91328 -29.60967 -28.65161 -27.00901 -24.15573 -23.14521 -22.37482 -21.39454 -20.14536 -19.32373 -18.44370 -17.18540 -17.11870 -16.49046 -15.94433 -15.34132 -14.82296 -14.62725 -14.29240 -14.09442 -13.72012 -13.41116 -13.26882 -13.18735 -12.85931 -12.73493 -12.48090 -12.15469 -11.90188 -11.66074 -11.36235 -11.29577 -11.07332 -10.84110 -10.65904 -10.56473 -10.47981 -10.42998 -10.33058 -10.02971 -9.94106 -9.68816 -8.87631 -8.77939 -6.91869 -5.76680 -3.05393 2.45275 2.47968 2.51938 2.84809 3.42966 3.48274 3.50785 4.00102 4.21406 4.48437 4.57486 4.61093 4.64144 4.72723 4.81716 5.05012 5.05704 5.12238 5.18607 5.24122 5.30436 5.40302 5.54402 5.61114 5.66931 5.69455 5.74796 5.81245 5.84320 5.89632 5.93665 6.10542 6.12540 6.24623 6.35616 6.39183 6.83329 6.88171 7.29673 7.37141 7.69863 8.00937 8.42401 9.53337 10.12178 10.46278 11.46346 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.069148 B = 0.002179 C = 0.002133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 404.831921 B =12849.753460 C =13120.923733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.186 4.186 3 C -0.014 4.014 4 C -0.100 4.100 5 C -0.136 4.136 6 C 0.525 3.475 7 O -0.543 6.543 8 N -0.620 5.620 9 C 0.099 3.901 10 C -0.127 4.127 11 C -0.094 4.094 12 H 0.084 0.916 13 C -0.116 4.116 14 C 0.155 3.845 15 N -0.735 5.735 16 C -0.239 4.239 17 H 0.071 0.929 18 C -0.015 4.015 19 N -0.933 5.933 20 Si 0.907 3.093 21 H -0.280 1.280 22 H -0.291 1.291 23 H -0.292 1.292 24 C 0.108 3.892 25 H 0.216 0.784 26 H 0.087 0.913 27 H 0.087 0.913 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.095 0.905 31 H 0.095 0.905 32 H 0.068 0.932 33 H 0.068 0.932 34 H 0.081 0.919 35 H 0.086 0.914 36 H 0.066 0.934 37 H 0.065 0.935 38 H 0.020 0.980 39 H 0.017 0.983 40 H 0.383 0.617 41 H 0.254 0.746 42 H 0.077 0.923 43 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.347 -12.189 -13.156 27.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.186 4.186 3 C -0.050 4.050 4 C -0.138 4.138 5 C -0.176 4.176 6 C 0.314 3.686 7 O -0.421 6.421 8 N -0.354 5.354 9 C -0.024 4.024 10 C -0.165 4.165 11 C -0.114 4.114 12 H 0.102 0.898 13 C -0.154 4.154 14 C 0.027 3.973 15 N -0.379 5.379 16 C -0.370 4.370 17 H 0.089 0.911 18 C -0.211 4.211 19 N -0.582 5.582 20 Si 0.738 3.262 21 H -0.206 1.206 22 H -0.219 1.219 23 H -0.219 1.219 24 C -0.014 4.014 25 H 0.233 0.767 26 H 0.106 0.894 27 H 0.106 0.894 28 H 0.093 0.907 29 H 0.093 0.907 30 H 0.113 0.887 31 H 0.113 0.887 32 H 0.086 0.914 33 H 0.086 0.914 34 H 0.100 0.900 35 H 0.104 0.896 36 H 0.085 0.915 37 H 0.084 0.916 38 H 0.037 0.963 39 H 0.035 0.965 40 H 0.217 0.783 41 H 0.064 0.936 42 H 0.096 0.904 43 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -20.693 -11.842 -12.921 27.118 hybrid contribution 0.830 0.208 0.107 0.862 sum -19.863 -11.634 -12.814 26.346 Atomic orbital electron populations 1.24931 0.96029 1.00964 1.00964 1.23101 0.94584 1.00439 1.00439 1.18765 0.84897 1.00671 1.00677 1.21291 0.92948 0.99778 0.99785 1.21657 0.97211 0.99337 0.99384 1.20336 0.80509 0.83899 0.83832 1.90720 1.54345 1.48455 1.48557 1.48587 1.05053 1.40588 1.41155 1.22118 0.87456 0.96296 0.96504 1.22742 0.95230 0.96638 1.01917 1.22294 0.93307 0.96936 0.98849 0.89778 1.21665 0.95137 1.01672 0.96915 1.20623 0.87857 0.96701 0.92092 1.42385 1.06839 1.82013 1.06668 1.19282 0.85890 1.37907 0.93962 0.91140 1.24758 0.98323 1.02589 0.95464 1.69676 1.34427 1.54243 0.99873 0.86112 0.85117 0.77569 0.77367 1.20567 1.21861 1.21872 1.22308 0.93136 0.93193 0.92756 0.76689 0.89433 0.89437 0.90697 0.90696 0.88680 0.88686 0.91390 0.91379 0.90023 0.89554 0.91521 0.91584 0.96262 0.96542 0.78315 0.93567 0.90446 0.91187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -1.67 19.25 29.55 0.57 -1.10 16 2 C -0.19 -1.60 13.34 -37.12 -0.50 -2.09 16 3 C -0.01 -0.09 5.70 -29.52 -0.17 -0.25 16 4 C -0.10 -0.80 4.46 -26.73 -0.12 -0.92 16 5 C -0.14 -0.98 4.89 -27.88 -0.14 -1.11 16 6 C 0.53 6.11 7.85 -10.98 -0.09 6.02 16 7 O -0.54 -8.56 16.24 5.56 0.09 -8.47 16 8 N -0.62 -6.76 3.33 -170.66 -0.57 -7.33 16 9 C 0.10 0.81 6.49 -3.07 -0.02 0.79 16 10 C -0.13 -1.26 5.60 -24.90 -0.14 -1.40 16 11 C -0.09 -1.11 3.06 -88.59 -0.27 -1.39 16 12 H 0.08 1.00 8.14 -51.93 -0.42 0.57 16 13 C -0.12 -1.75 4.84 -26.74 -0.13 -1.88 16 14 C 0.15 2.99 6.11 -4.04 -0.02 2.96 16 15 N -0.73 -18.61 5.60 -59.91 -0.34 -18.94 16 16 C -0.24 -6.71 9.99 -15.06 -0.15 -6.86 16 17 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 18 C -0.02 -0.45 5.50 -17.43 -0.10 -0.54 16 19 N -0.93 -28.37 13.06 55.49 0.72 -27.64 16 20 Si 0.91 22.38 29.55 -169.99 -5.02 17.36 16 21 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 22 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 23 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 24 C 0.11 1.31 6.37 -2.65 -0.02 1.29 16 25 H 0.22 0.99 7.80 -54.08 -0.42 0.56 16 26 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.07 0.71 8.10 -51.93 -0.42 0.29 16 29 H 0.07 0.71 8.10 -51.93 -0.42 0.29 16 30 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.08 0.85 8.01 -51.93 -0.42 0.43 16 35 H 0.09 0.80 8.13 -51.93 -0.42 0.38 16 36 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 37 H 0.07 1.01 8.11 -51.93 -0.42 0.59 16 38 H 0.02 0.37 7.51 -51.93 -0.39 -0.02 16 39 H 0.02 0.33 8.14 -51.93 -0.42 -0.10 16 40 H 0.38 10.22 7.67 -40.82 -0.31 9.90 16 41 H 0.25 7.45 8.31 -40.82 -0.34 7.11 16 42 H 0.08 1.01 8.04 -51.93 -0.42 0.60 16 43 H 0.07 0.87 8.03 -51.93 -0.42 0.45 16 LS Contribution 361.47 15.07 5.45 5.45 Total: -1.00 -34.19 361.47 -8.36 -42.55 By element: Atomic # 1 Polarization: 10.92 SS G_CDS: -7.41 Total: 3.51 kcal Atomic # 6 Polarization: -5.19 SS G_CDS: -1.28 Total: -6.48 kcal Atomic # 7 Polarization: -53.73 SS G_CDS: -0.18 Total: -53.91 kcal Atomic # 8 Polarization: -8.56 SS G_CDS: 0.09 Total: -8.47 kcal Atomic # 14 Polarization: 22.38 SS G_CDS: -5.02 Total: 17.36 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -34.19 -8.36 -42.55 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733644764.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.289 kcal (2) G-P(sol) polarization free energy of solvation -34.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.554 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds