Wall clock time and date at job start Tue Mar 31 2020 00:44:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17401 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 C 1.52996 * 109.46833 * 224.97665 * 3 2 1 5 5 C 1.52998 * 109.46929 * 180.02562 * 4 3 2 6 6 C 1.50706 * 109.47348 * 179.97438 * 5 4 3 7 7 O 1.21283 * 119.99503 * 359.97438 * 6 5 4 8 8 N 1.34773 * 120.00081 * 179.72561 * 6 5 4 9 9 C 1.47014 * 125.65113 * 0.02562 * 8 6 5 10 10 C 1.54321 * 107.27611 * 178.90705 * 9 8 6 11 11 C 1.55160 * 102.93967 * 337.80925 * 10 9 8 12 12 H 1.09003 * 111.00608 * 277.38983 * 11 10 9 13 13 C 1.52994 * 111.00411 * 153.57667 * 11 10 9 14 14 C 1.52990 * 109.47669 * 66.45281 * 13 11 10 15 15 N 1.46504 * 109.47747 * 180.02562 * 14 13 11 16 16 C 1.36931 * 120.00038 * 180.02562 * 15 14 13 17 17 H 1.08002 * 120.00628 * 359.97438 * 16 15 14 18 18 C 1.38814 * 119.99837 * 180.02562 * 16 15 14 19 19 N 1.31627 * 119.99918 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 120.00151 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.47150 * 359.97438 * 20 18 16 22 22 H 1.48505 * 109.47276 * 119.99153 * 20 18 16 23 23 H 1.48494 * 109.47104 * 239.99458 * 20 18 16 24 24 C 1.47422 * 125.64458 * 179.72077 * 8 6 5 25 25 H 4.44644 * 5.63484 * 179.97438 * 4 1 2 26 26 H 1.09000 * 109.46782 * 104.97659 * 3 2 1 27 27 H 1.08994 * 109.47314 * 344.97744 * 3 2 1 28 28 H 1.09000 * 109.47441 * 60.00398 * 4 3 2 29 29 H 1.09002 * 109.47087 * 299.99844 * 4 3 2 30 30 H 1.09001 * 109.47671 * 60.00109 * 5 4 3 31 31 H 1.08998 * 109.47454 * 300.00107 * 5 4 3 32 32 H 1.09005 * 109.88517 * 298.32848 * 9 8 6 33 33 H 1.09004 * 109.88554 * 59.33285 * 9 8 6 34 34 H 1.09001 * 110.71957 * 96.16695 * 10 9 8 35 35 H 1.08997 * 110.72421 * 219.44856 * 10 9 8 36 36 H 1.09007 * 109.47364 * 186.45292 * 13 11 10 37 37 H 1.09005 * 109.47087 * 306.45003 * 13 11 10 38 38 H 1.09005 * 109.47338 * 299.99939 * 14 13 11 39 39 H 1.09005 * 109.47093 * 59.99725 * 14 13 11 40 40 H 0.96997 * 119.99571 * 0.02562 * 15 14 13 41 41 H 0.97001 * 119.99828 * 180.02562 * 19 18 16 42 42 H 1.08996 * 110.36888 * 322.99350 * 24 8 6 43 43 H 1.08997 * 110.37049 * 85.32370 * 24 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1555 1.0213 1.0196 5 6 4.6855 1.0225 1.0191 6 6 5.1874 2.0282 2.0230 7 8 4.3989 2.6802 2.6742 8 7 6.5124 2.1995 2.2006 9 6 7.5734 1.4759 1.4851 10 6 8.9241 2.0208 1.9953 11 6 8.5455 3.4165 2.5577 12 1 8.5008 4.1595 1.7614 13 6 9.5216 3.8493 3.6534 14 6 10.9060 4.0760 3.0430 15 7 11.8408 4.4899 4.0923 16 6 13.1481 4.7516 3.7803 17 1 13.4904 4.6526 2.7607 18 6 14.0340 5.1433 4.7747 19 7 13.6171 5.2635 6.0174 20 14 15.8176 5.4998 4.3493 21 1 16.0306 5.2917 2.8945 22 1 16.1388 6.9064 4.7008 23 1 16.7015 4.5841 5.1145 24 6 7.1377 3.1482 3.1399 25 1 -1.0502 0.0000 -0.0003 26 1 3.0092 0.2664 -0.9928 27 1 3.0098 -0.9916 0.2664 28 1 2.7923 0.7556 2.0123 29 1 2.7917 2.0137 0.7532 30 1 5.0484 1.2885 0.0264 31 1 5.0497 0.0302 1.2852 32 1 7.5010 0.4087 1.6952 33 1 7.4824 1.6493 0.4128 34 1 9.3242 1.3830 2.7836 35 1 9.6362 2.1155 1.1756 36 1 9.1694 4.7750 4.1089 37 1 9.5828 3.0707 4.4138 38 1 11.2583 3.1504 2.5876 39 1 10.8448 4.8546 2.2826 40 1 11.5336 4.5784 5.0081 41 1 14.2360 5.5376 6.7122 42 1 6.5626 4.0730 3.1842 43 1 7.2184 2.7027 4.1314 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733644764.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:44:43 Heat of formation + Delta-G solvation = -14.371006 kcal Electronic energy + Delta-G solvation = -20467.683532 eV Core-core repulsion = 17319.849200 eV Total energy + Delta-G solvation = -3147.834332 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.15183 -39.02064 -36.83798 -36.46512 -34.55974 -33.27511 -32.51071 -30.55555 -29.60692 -28.13723 -25.75146 -24.21134 -23.31716 -22.64719 -21.20916 -20.11951 -19.15587 -18.99465 -17.96447 -17.35910 -16.80132 -16.64174 -16.09849 -15.71350 -15.36973 -15.23121 -14.96081 -14.83562 -14.38444 -14.03112 -13.82717 -13.58112 -13.35392 -13.18616 -13.06225 -12.83685 -12.77759 -12.50157 -12.32663 -12.11311 -11.96408 -11.92625 -11.61836 -11.52748 -11.47841 -11.17433 -10.96105 -10.92222 -10.87049 -9.65034 -8.98692 -7.94716 -5.23700 1.48466 1.49442 1.59596 1.62971 1.82074 1.93435 2.06656 2.57072 3.38977 3.40264 3.53557 3.64986 3.76048 3.84726 4.07446 4.15268 4.19571 4.34690 4.37920 4.45659 4.51220 4.62785 4.63635 4.67152 4.72336 4.80319 4.80850 4.87326 4.91998 5.00539 5.13636 5.19824 5.21990 5.25354 5.31651 5.36764 5.39908 5.48444 5.51328 6.28131 6.55321 6.73024 7.15054 7.33781 8.11389 8.32933 9.29311 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.069148 B = 0.002179 C = 0.002133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 404.831921 B =12849.753460 C =13120.923733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.216 4.216 3 C -0.009 4.009 4 C -0.095 4.095 5 C -0.124 4.124 6 C 0.516 3.484 7 O -0.597 6.597 8 N -0.620 5.620 9 C 0.100 3.900 10 C -0.126 4.126 11 C -0.085 4.085 12 H 0.088 0.912 13 C -0.103 4.103 14 C 0.154 3.846 15 N -0.751 5.751 16 C -0.244 4.244 17 H 0.079 0.921 18 C -0.080 4.080 19 N -0.972 5.972 20 Si 0.975 3.025 21 H -0.263 1.263 22 H -0.295 1.295 23 H -0.293 1.293 24 C 0.108 3.892 25 H 0.238 0.762 26 H 0.108 0.892 27 H 0.107 0.893 28 H 0.051 0.949 29 H 0.052 0.948 30 H 0.125 0.875 31 H 0.124 0.876 32 H 0.093 0.907 33 H 0.095 0.905 34 H 0.076 0.924 35 H 0.097 0.903 36 H 0.054 0.946 37 H 0.062 0.938 38 H 0.032 0.968 39 H 0.018 0.982 40 H 0.372 0.628 41 H 0.251 0.749 42 H 0.060 0.940 43 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.980 -13.921 -15.722 28.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.216 4.216 3 C -0.046 4.046 4 C -0.133 4.133 5 C -0.163 4.163 6 C 0.307 3.693 7 O -0.478 6.478 8 N -0.353 5.353 9 C -0.021 4.021 10 C -0.164 4.164 11 C -0.104 4.104 12 H 0.106 0.894 13 C -0.141 4.141 14 C 0.028 3.972 15 N -0.394 5.394 16 C -0.376 4.376 17 H 0.097 0.903 18 C -0.272 4.272 19 N -0.623 5.623 20 Si 0.804 3.196 21 H -0.188 1.188 22 H -0.222 1.222 23 H -0.220 1.220 24 C -0.015 4.015 25 H 0.255 0.745 26 H 0.126 0.874 27 H 0.125 0.875 28 H 0.070 0.930 29 H 0.071 0.929 30 H 0.143 0.857 31 H 0.142 0.858 32 H 0.111 0.889 33 H 0.113 0.887 34 H 0.094 0.906 35 H 0.116 0.884 36 H 0.073 0.927 37 H 0.080 0.920 38 H 0.050 0.950 39 H 0.036 0.964 40 H 0.203 0.797 41 H 0.059 0.941 42 H 0.078 0.922 43 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -20.324 -13.606 -15.551 28.983 hybrid contribution 0.647 0.753 0.896 1.337 sum -19.678 -12.853 -14.655 27.698 Atomic orbital electron populations 1.25718 0.97141 1.00552 1.00554 1.23864 0.95896 1.00934 1.00933 1.18846 0.83666 1.01012 1.01033 1.21184 0.93855 0.99144 0.99132 1.21693 0.96126 0.99219 0.99301 1.21220 0.80164 0.83981 0.83925 1.90697 1.55672 1.50682 1.50782 1.48704 1.05601 1.40222 1.40819 1.22314 0.85133 0.97136 0.97533 1.22754 0.96688 0.94826 1.02083 1.22120 0.92128 0.98546 0.97648 0.89383 1.21495 0.93776 1.01136 0.97729 1.20805 0.88733 0.96778 0.90899 1.42665 1.07105 1.82174 1.07432 1.19720 0.87143 1.36511 0.94234 0.90344 1.25620 1.02660 1.03411 0.95463 1.69837 1.35678 1.55920 1.00849 0.85043 0.79884 0.76776 0.77879 1.18766 1.22199 1.22006 1.22148 0.93183 0.93035 0.93104 0.74513 0.87421 0.87453 0.92985 0.92950 0.85702 0.85766 0.88914 0.88671 0.90559 0.88409 0.92724 0.91959 0.95006 0.96423 0.79654 0.94063 0.92184 0.91939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -3.34 19.25 74.32 1.43 -1.91 16 2 C -0.22 -3.50 13.34 31.13 0.42 -3.09 16 3 C -0.01 -0.10 5.70 28.79 0.16 0.07 16 4 C -0.09 -1.42 4.46 30.59 0.14 -1.29 16 5 C -0.12 -1.42 4.89 29.85 0.15 -1.27 16 6 C 0.52 11.39 7.85 87.66 0.69 12.07 16 7 O -0.60 -19.31 16.24 -3.04 -0.05 -19.36 16 8 N -0.62 -12.38 3.33 -812.24 -2.70 -15.09 16 9 C 0.10 1.25 6.49 86.73 0.56 1.81 16 10 C -0.13 -2.12 5.60 31.78 0.18 -1.95 16 11 C -0.08 -1.90 3.06 -9.48 -0.03 -1.93 16 12 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 13 C -0.10 -3.10 4.84 30.59 0.15 -2.95 16 14 C 0.15 5.82 6.11 86.38 0.53 6.34 16 15 N -0.75 -38.16 5.60 -343.45 -1.92 -40.09 16 16 C -0.24 -13.62 9.99 84.04 0.84 -12.78 16 17 H 0.08 4.16 7.83 -2.91 -0.02 4.13 16 18 C -0.08 -4.59 5.50 84.86 0.47 -4.12 16 19 N -0.97 -59.97 13.06 21.65 0.28 -59.69 16 20 Si 0.98 45.94 29.55 68.60 2.03 47.97 16 21 H -0.26 -11.53 7.11 99.48 0.71 -10.82 16 22 H -0.29 -13.93 7.11 99.48 0.71 -13.22 16 23 H -0.29 -13.75 7.11 99.48 0.71 -13.05 16 24 C 0.11 2.59 6.37 86.78 0.55 3.14 16 25 H 0.24 1.92 7.80 -4.41 -0.03 1.88 16 26 H 0.11 0.69 8.14 -2.39 -0.02 0.67 16 27 H 0.11 0.69 8.14 -2.39 -0.02 0.67 16 28 H 0.05 1.00 8.10 -2.39 -0.02 0.98 16 29 H 0.05 1.00 8.10 -2.39 -0.02 0.98 16 30 H 0.12 0.74 8.14 -2.39 -0.02 0.72 16 31 H 0.12 0.75 8.14 -2.39 -0.02 0.73 16 32 H 0.09 0.78 8.14 -2.38 -0.02 0.76 16 33 H 0.10 0.75 8.14 -2.38 -0.02 0.74 16 34 H 0.08 1.40 8.01 -2.39 -0.02 1.38 16 35 H 0.10 1.47 8.13 -2.39 -0.02 1.45 16 36 H 0.05 1.76 8.14 -2.38 -0.02 1.74 16 37 H 0.06 1.91 8.11 -2.38 -0.02 1.89 16 38 H 0.03 1.15 7.51 -2.38 -0.02 1.13 16 39 H 0.02 0.68 8.14 -2.38 -0.02 0.66 16 40 H 0.37 20.26 7.67 -92.71 -0.71 19.54 16 41 H 0.25 14.94 8.31 -92.71 -0.77 14.17 16 42 H 0.06 1.63 8.04 -2.39 -0.02 1.61 16 43 H 0.06 1.57 8.03 -2.39 -0.02 1.55 16 Total: -1.00 -75.96 361.47 4.12 -71.85 By element: Atomic # 1 Polarization: 21.97 SS G_CDS: 0.25 Total: 22.22 kcal Atomic # 6 Polarization: -14.06 SS G_CDS: 6.23 Total: -7.83 kcal Atomic # 7 Polarization: -110.51 SS G_CDS: -4.34 Total: -114.86 kcal Atomic # 8 Polarization: -19.31 SS G_CDS: -0.05 Total: -19.36 kcal Atomic # 14 Polarization: 45.94 SS G_CDS: 2.03 Total: 47.97 kcal Total: -75.96 4.12 -71.85 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733644764.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.478 kcal (2) G-P(sol) polarization free energy of solvation -75.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.849 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds