Wall clock time and date at job start Tue Mar 31 2020 00:49:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17410 * 1 3 3 C 1.47194 * 179.97438 * 2 1 4 4 C 1.52999 * 109.46894 * 205.22832 * 3 2 1 5 5 C 1.53005 * 109.47173 * 180.02562 * 4 3 2 6 6 C 1.50696 * 109.47162 * 179.97438 * 5 4 3 7 7 O 1.21280 * 120.00261 * 0.02562 * 6 5 4 8 8 N 1.34775 * 120.00057 * 179.97438 * 6 5 4 9 9 C 1.46501 * 120.00495 * 180.02562 * 8 6 5 10 10 H 1.09006 * 109.46664 * 35.00067 * 9 8 6 11 11 C 1.53000 * 109.46760 * 275.00438 * 9 8 6 12 12 C 1.52995 * 109.47187 * 299.99322 * 11 9 8 13 13 C 1.52996 * 109.47465 * 300.00540 * 12 11 9 14 14 C 1.53000 * 109.47359 * 59.99565 * 13 12 11 15 15 H 1.09002 * 109.46821 * 60.00102 * 14 13 12 16 16 N 1.46496 * 109.47129 * 179.97438 * 14 13 12 17 17 C 1.36934 * 120.00548 * 275.00076 * 16 14 13 18 18 H 1.08004 * 119.99288 * 0.02562 * 17 16 14 19 19 C 1.38805 * 120.00389 * 180.02562 * 17 16 14 20 20 N 1.31624 * 120.00257 * 180.02562 * 19 17 16 21 21 Si 1.86803 * 119.99929 * 359.97438 * 19 17 16 22 22 H 1.48498 * 109.47174 * 270.00277 * 21 19 17 23 23 H 1.48501 * 109.47062 * 30.00228 * 21 19 17 24 24 H 1.48499 * 109.46981 * 150.00382 * 21 19 17 25 25 C 1.52995 * 109.47187 * 300.00605 * 14 13 12 26 26 H 4.44643 * 5.63368 * 179.97438 * 4 1 2 27 27 H 1.08999 * 109.46982 * 85.22771 * 3 2 1 28 28 H 1.08993 * 109.47244 * 325.22750 * 3 2 1 29 29 H 1.08999 * 109.47356 * 60.00168 * 4 3 2 30 30 H 1.09001 * 109.47271 * 299.99690 * 4 3 2 31 31 H 1.08999 * 109.47000 * 59.99756 * 5 4 3 32 32 H 1.09001 * 109.46610 * 299.99901 * 5 4 3 33 33 H 0.97007 * 119.99617 * 0.02562 * 8 6 5 34 34 H 1.09002 * 109.46821 * 179.97438 * 11 9 8 35 35 H 1.09002 * 109.47254 * 60.00182 * 11 9 8 36 36 H 1.09007 * 109.47250 * 180.02562 * 12 11 9 37 37 H 1.09002 * 109.46830 * 60.00508 * 12 11 9 38 38 H 1.09002 * 109.47071 * 299.99821 * 13 12 11 39 39 H 1.09006 * 109.47475 * 180.02562 * 13 12 11 40 40 H 0.96999 * 119.99694 * 95.00601 * 16 14 13 41 41 H 0.97001 * 119.99885 * 179.97438 * 20 19 17 42 42 H 1.08997 * 109.47205 * 180.02562 * 25 14 13 43 43 H 1.09002 * 109.46830 * 299.99492 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1554 1.3058 0.6148 5 6 4.6855 1.3068 0.6143 6 6 5.1871 2.5926 1.2193 7 8 4.3987 3.4259 1.6127 8 7 6.5121 2.8161 1.3242 9 6 6.9999 4.0658 1.9129 10 1 6.3272 4.3779 2.7118 11 6 7.0507 5.1511 0.8357 12 6 7.9948 4.7130 -0.2857 13 6 9.3975 4.4947 0.2848 14 6 9.3468 3.4093 1.3620 15 1 8.9839 2.4795 0.9240 16 7 10.6901 3.1998 1.9078 17 6 11.5601 2.3501 1.2784 18 1 11.2560 1.8346 0.3793 19 6 12.8326 2.1512 1.7959 20 7 13.6691 1.3348 1.1906 21 14 13.3586 3.0433 3.3505 22 1 13.9786 4.3435 2.9895 23 1 12.1713 3.2826 4.2097 24 1 14.3442 2.2129 4.0883 25 6 8.4026 3.8474 2.4833 26 1 -1.0501 -0.0002 -0.0003 27 1 3.0094 -0.0847 -1.0241 28 1 3.0098 -0.8433 0.5861 29 1 2.7921 1.3911 1.6389 30 1 2.7917 2.1498 0.0287 31 1 5.0484 1.2217 -0.4100 32 1 5.0495 0.4628 1.2001 33 1 7.1427 2.1494 1.0099 34 1 7.4132 6.0811 1.2737 35 1 6.0513 5.3068 0.4293 36 1 8.0313 5.4865 -1.0529 37 1 7.6319 3.7832 -0.7236 38 1 9.7605 5.4245 0.7228 39 1 10.0704 4.1830 -0.5142 40 1 10.9632 3.6630 2.7151 41 1 14.5585 1.1961 1.5521 42 1 8.3668 3.0744 3.2509 43 1 8.7656 4.7772 2.9213 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001752970015.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:49:22 Heat of formation + Delta-G solvation = -20.048894 kcal Electronic energy + Delta-G solvation = -21450.392773 eV Core-core repulsion = 18302.312229 eV Total energy + Delta-G solvation = -3148.080543 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.22355 -39.35539 -36.57096 -36.13240 -34.40073 -33.32747 -33.06201 -31.04479 -29.95339 -28.51550 -25.38051 -23.93150 -23.18562 -22.41143 -21.49401 -20.29542 -19.45138 -19.11820 -17.92866 -16.95994 -16.74910 -16.61328 -16.32324 -15.58487 -15.36772 -15.24944 -14.90389 -14.67266 -14.53225 -14.20449 -13.77968 -13.65901 -13.30842 -13.04156 -13.02076 -12.96762 -12.84187 -12.44044 -12.37892 -11.95247 -11.90316 -11.80142 -11.61603 -11.50880 -11.14909 -11.01981 -10.95217 -10.86506 -10.76224 -9.95653 -9.26926 -7.98815 -5.31361 1.40325 1.42696 1.50024 1.74631 1.87259 1.94464 2.35276 2.51288 3.32998 3.47417 3.54797 3.81655 3.88821 3.93759 4.12031 4.17746 4.23118 4.29944 4.35596 4.53778 4.55810 4.66984 4.69575 4.72576 4.74435 4.82606 4.84690 4.97465 5.11241 5.18083 5.22331 5.22924 5.23121 5.35067 5.38753 5.51303 5.55380 5.68157 5.82352 6.25503 6.64325 6.73995 7.12064 7.34143 7.89123 8.06730 9.22518 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.024036 B = 0.003312 C = 0.003112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1164.626991 B = 8451.494482 C = 8996.689868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.216 4.216 3 C -0.013 4.013 4 C -0.090 4.090 5 C -0.137 4.137 6 C 0.510 3.490 7 O -0.587 6.587 8 N -0.716 5.716 9 C 0.157 3.843 10 H 0.080 0.920 11 C -0.121 4.121 12 C -0.105 4.105 13 C -0.130 4.130 14 C 0.179 3.821 15 H 0.050 0.950 16 N -0.753 5.753 17 C -0.221 4.221 18 H 0.061 0.939 19 C -0.067 4.067 20 N -0.985 5.985 21 Si 0.951 3.049 22 H -0.283 1.283 23 H -0.250 1.250 24 H -0.300 1.300 25 C -0.125 4.125 26 H 0.240 0.760 27 H 0.104 0.896 28 H 0.103 0.897 29 H 0.054 0.946 30 H 0.055 0.945 31 H 0.120 0.880 32 H 0.119 0.881 33 H 0.409 0.591 34 H 0.078 0.922 35 H 0.059 0.941 36 H 0.066 0.934 37 H 0.062 0.938 38 H 0.055 0.945 39 H 0.038 0.962 40 H 0.364 0.636 41 H 0.256 0.744 42 H 0.068 0.932 43 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.587 1.693 -1.162 21.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.216 4.216 3 C -0.049 4.049 4 C -0.128 4.128 5 C -0.177 4.177 6 C 0.298 3.702 7 O -0.468 6.468 8 N -0.369 5.369 9 C 0.051 3.949 10 H 0.098 0.902 11 C -0.160 4.160 12 C -0.143 4.143 13 C -0.170 4.170 14 C 0.072 3.928 15 H 0.068 0.932 16 N -0.395 5.395 17 C -0.352 4.352 18 H 0.079 0.921 19 C -0.258 4.258 20 N -0.636 5.636 21 Si 0.779 3.221 22 H -0.209 1.209 23 H -0.174 1.174 24 H -0.228 1.228 25 C -0.163 4.163 26 H 0.257 0.743 27 H 0.122 0.878 28 H 0.121 0.879 29 H 0.073 0.927 30 H 0.074 0.926 31 H 0.138 0.862 32 H 0.137 0.863 33 H 0.246 0.754 34 H 0.097 0.903 35 H 0.078 0.922 36 H 0.084 0.916 37 H 0.080 0.920 38 H 0.074 0.926 39 H 0.057 0.943 40 H 0.197 0.803 41 H 0.064 0.936 42 H 0.087 0.913 43 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -22.049 2.128 -1.020 22.175 hybrid contribution 1.093 0.105 0.631 1.267 sum -20.956 2.233 -0.389 21.078 Atomic orbital electron populations 1.25711 0.97071 1.00224 1.00748 1.23823 0.95806 1.01091 1.00909 1.18853 0.83880 0.98582 1.03604 1.21139 0.93595 0.96896 1.01206 1.21739 0.96527 0.95009 1.04406 1.21251 0.81919 0.89254 0.77764 1.90670 1.56211 1.48909 1.50989 1.46240 1.07158 1.20856 1.62623 1.20790 0.94052 0.84554 0.95488 0.90171 1.21844 0.99366 0.98347 0.96404 1.21398 0.93848 1.01469 0.97562 1.22100 0.96548 0.99529 0.98819 1.20361 0.83453 0.96143 0.92870 0.93201 1.42836 1.12689 1.53520 1.30487 1.19015 0.93402 1.16661 1.06123 0.92143 1.25461 0.96858 1.01020 1.02452 1.69878 1.07749 1.42577 1.43381 0.85463 0.78243 0.77841 0.80541 1.20942 1.17432 1.22758 1.22019 0.93426 1.02839 0.98059 0.74346 0.87777 0.87856 0.92693 0.92597 0.86208 0.86335 0.75363 0.90322 0.92214 0.91553 0.91971 0.92643 0.94289 0.80308 0.93562 0.91311 0.89855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -3.64 19.25 74.32 1.43 -2.21 16 2 C -0.22 -3.96 13.34 31.12 0.42 -3.54 16 3 C -0.01 -0.17 5.70 28.79 0.16 -0.01 16 4 C -0.09 -1.53 4.46 30.60 0.14 -1.40 16 5 C -0.14 -2.00 5.70 29.85 0.17 -1.83 16 6 C 0.51 11.52 7.79 87.66 0.68 12.20 16 7 O -0.59 -17.92 15.64 -3.03 -0.05 -17.97 16 8 N -0.72 -15.50 4.23 -442.54 -1.87 -17.37 16 9 C 0.16 3.70 2.78 44.99 0.13 3.83 16 10 H 0.08 2.03 7.58 -2.38 -0.02 2.01 16 11 C -0.12 -2.76 5.60 30.59 0.17 -2.59 16 12 C -0.10 -2.52 5.76 30.59 0.18 -2.34 16 13 C -0.13 -4.01 5.50 30.59 0.17 -3.84 16 14 C 0.18 5.91 2.60 44.99 0.12 6.03 16 15 H 0.05 1.66 6.44 -2.39 -0.02 1.64 16 16 N -0.75 -32.45 4.93 -322.96 -1.59 -34.04 16 17 C -0.22 -11.90 10.41 84.03 0.87 -11.03 16 18 H 0.06 3.56 8.06 -2.91 -0.02 3.53 16 19 C -0.07 -3.81 5.50 84.86 0.47 -3.35 16 20 N -0.98 -61.78 13.97 21.65 0.30 -61.48 16 21 Si 0.95 44.36 27.74 68.60 1.90 46.26 16 22 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 23 H -0.25 -10.38 6.52 99.48 0.65 -9.73 16 24 H -0.30 -14.39 7.11 99.48 0.71 -13.68 16 25 C -0.12 -3.28 5.08 30.59 0.16 -3.13 16 26 H 0.24 2.20 7.80 -4.41 -0.03 2.16 16 27 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 28 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16 29 H 0.05 1.13 8.10 -2.39 -0.02 1.11 16 30 H 0.06 1.14 8.10 -2.39 -0.02 1.12 16 31 H 0.12 1.23 8.14 -2.39 -0.02 1.21 16 32 H 0.12 1.26 8.14 -2.39 -0.02 1.24 16 33 H 0.41 8.11 6.87 -92.70 -0.64 7.48 16 34 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 35 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 36 H 0.07 1.48 8.14 -2.38 -0.02 1.46 16 37 H 0.06 1.45 7.60 -2.39 -0.02 1.43 16 38 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 39 H 0.04 1.40 8.14 -2.38 -0.02 1.38 16 40 H 0.36 15.24 5.66 -92.71 -0.52 14.72 16 41 H 0.26 15.39 8.31 -92.71 -0.77 14.62 16 42 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 43 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 Total: -1.00 -71.42 350.81 3.72 -67.70 By element: Atomic # 1 Polarization: 30.33 SS G_CDS: -0.23 Total: 30.10 kcal Atomic # 6 Polarization: -18.45 SS G_CDS: 5.26 Total: -13.20 kcal Atomic # 7 Polarization: -109.74 SS G_CDS: -3.16 Total: -112.90 kcal Atomic # 8 Polarization: -17.92 SS G_CDS: -0.05 Total: -17.97 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 1.90 Total: 46.26 kcal Total: -71.42 3.72 -67.70 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752970015.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.652 kcal (2) G-P(sol) polarization free energy of solvation -71.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.701 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds